Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36835 * 125.03025 * 2 1 4 4 H 0.96995 * 125.06505 * 0.02999 * 3 2 1 5 5 C 1.37693 * 109.86897 * 180.29869 * 3 2 1 6 6 C 1.39129 * 133.50542 * 179.71106 * 5 3 2 7 7 C 1.37746 * 119.77633 * 180.02562 * 6 5 3 8 8 C 1.38837 * 120.66648 * 0.02562 * 7 6 5 9 9 C 1.36620 * 120.52992 * 359.97438 * 8 7 6 10 10 C 1.39628 * 119.76105 * 0.02562 * 9 8 7 11 11 C 1.34239 * 125.03676 * 179.82811 * 2 1 3 12 12 C 1.50699 * 126.50192 * 359.97438 * 11 2 1 13 13 C 1.53006 * 109.46866 * 269.68691 * 12 11 2 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99310 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99452 * 19 17 15 23 23 H 1.08997 * 109.47066 * 270.16577 * 1 2 3 24 24 H 1.08996 * 109.47442 * 30.17131 * 1 2 3 25 25 H 1.09001 * 109.46602 * 150.17208 * 1 2 3 26 26 H 1.07998 * 120.10998 * 0.02562 * 6 5 3 27 27 H 1.08003 * 119.66729 * 179.97438 * 7 6 5 28 28 H 1.08000 * 119.73538 * 180.02562 * 8 7 6 29 29 H 1.07998 * 120.11970 * 179.97438 * 9 8 7 30 30 H 1.09000 * 109.47247 * 149.68860 * 12 11 2 31 31 H 1.09001 * 109.47358 * 29.68286 * 12 11 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 13 12 11 33 33 H 1.09000 * 109.47050 * 60.00048 * 13 12 11 34 34 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 35 35 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 36 36 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9622 2.0325 0.0004 5 6 3.6215 0.7604 -0.0068 6 6 4.8098 1.4839 -0.0147 7 6 6.0158 0.8184 -0.0208 8 6 6.0589 -0.5693 -0.0195 9 6 4.9042 -1.2995 -0.0117 10 6 3.6706 -0.6454 -0.0055 11 6 2.2777 -1.0991 0.0033 12 6 1.8005 -2.5285 0.0081 13 6 1.6470 -3.0101 1.4523 14 6 1.1619 -4.4611 1.4572 15 6 1.0101 -4.9352 2.8796 16 1 1.2365 -4.2682 3.6982 17 6 0.5821 -6.2206 3.1360 18 7 0.3059 -7.0327 2.1391 19 14 0.3933 -6.8080 4.8991 20 1 -0.9847 -6.5203 5.3718 21 1 0.6433 -8.2704 4.9631 22 1 1.3712 -6.1004 5.7640 23 1 -0.3633 0.0030 1.0276 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3632 -0.8916 -0.5112 26 1 4.7867 2.5636 -0.0162 27 1 6.9372 1.3818 -0.0274 28 1 7.0128 -1.0757 -0.0239 29 1 4.9454 -2.3787 -0.0111 30 1 2.5267 -3.1558 -0.5088 31 1 0.8384 -2.5922 -0.5002 32 1 2.6090 -2.9464 1.9607 33 1 0.9207 -2.3828 1.9692 34 1 0.1998 -4.5244 0.9489 35 1 1.8879 -5.0886 0.9402 36 1 0.0045 -7.9369 2.3193 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082533670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = 8.272218 kcal Electronic energy + Delta-G solvation = -16523.457484 eV Core-core repulsion = 13970.873715 eV Total energy + Delta-G solvation = -2552.583769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22844 -38.01478 -36.53013 -34.62198 -32.58981 -31.84501 -30.54924 -28.79595 -27.28977 -25.15552 -23.10705 -22.30369 -21.98499 -19.95584 -18.58325 -18.24642 -17.30394 -16.52310 -15.96580 -15.74520 -15.69662 -14.91149 -14.67860 -14.48381 -14.03859 -13.79652 -13.73054 -13.46204 -13.13276 -12.97796 -12.61286 -12.48557 -12.38735 -12.28629 -12.19581 -11.76951 -11.36924 -11.27720 -11.15912 -10.53301 -10.36305 -9.02765 -8.44469 -8.17249 -6.29098 0.23972 0.74280 1.39690 1.41493 1.52728 1.73390 2.23317 2.42364 3.02767 3.14431 3.79694 3.92268 4.13794 4.21133 4.30869 4.43299 4.50710 4.60122 4.60888 4.71237 4.78501 4.79277 5.00918 5.03655 5.13338 5.14962 5.29115 5.29793 5.34728 5.55629 5.61622 5.75515 5.79907 5.84688 5.90814 5.97520 6.28455 6.30583 6.78393 6.87309 7.39727 8.93742 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.004910 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.778253 B = 5701.117245 C = 6237.307464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.081 3.919 3 N -0.583 5.583 4 H 0.428 0.572 5 C 0.080 3.920 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.152 4.152 9 C -0.097 4.097 10 C -0.130 4.130 11 C -0.192 4.192 12 C -0.034 4.034 13 C -0.082 4.082 14 C 0.025 3.975 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.267 1.267 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.047 0.953 34 H -0.003 1.003 35 H -0.011 1.011 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 19.599 -5.629 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 N -0.189 5.189 4 H 0.268 0.732 5 C -0.027 4.027 6 C -0.153 4.153 7 C -0.123 4.123 8 C -0.171 4.171 9 C -0.116 4.116 10 C -0.135 4.135 11 C -0.199 4.199 12 C -0.072 4.072 13 C -0.120 4.120 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.073 0.927 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.191 1.191 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.165 0.835 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.015 0.985 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.021 19.555 -5.669 21.232 hybrid contribution -0.281 -0.584 0.742 0.985 sum 5.740 18.971 -4.927 20.424 Atomic orbital electron populations 1.20550 0.85803 1.04665 1.03841 1.20406 0.94445 0.85140 1.02715 1.41563 1.03272 1.08427 1.65601 0.73231 1.18489 0.85792 0.93635 1.04765 1.20369 0.89013 1.00205 1.05717 1.21173 0.97832 0.94021 0.99310 1.20913 0.97873 0.94840 1.03436 1.20489 0.91537 0.99731 0.99826 1.19445 0.93590 0.93362 1.07111 1.20255 0.91340 0.94832 1.13458 1.19826 1.00202 0.90555 0.96578 1.21325 0.99063 0.96141 0.95455 1.19029 0.94590 0.92225 0.95373 1.21695 1.44628 0.98076 0.93766 0.92732 1.25958 0.94966 0.96953 1.01779 1.70095 1.46722 1.07332 1.33146 0.85471 0.78880 0.77409 0.79443 1.19495 1.20536 1.19092 0.90111 0.88733 0.89962 0.83490 0.82659 0.84280 0.87254 0.93052 0.91186 0.94784 0.93388 0.98506 0.99293 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 10.18 71.24 0.72 -1.20 16 2 C 0.08 2.22 7.08 40.87 0.29 2.51 16 3 N -0.58 -13.55 6.07 -175.90 -1.07 -14.62 16 4 H 0.43 6.49 8.96 -92.71 -0.83 5.66 16 5 C 0.08 2.20 7.28 39.03 0.28 2.48 16 6 C -0.13 -2.87 10.08 22.37 0.23 -2.64 16 7 C -0.10 -2.17 10.01 22.30 0.22 -1.94 16 8 C -0.15 -3.77 9.97 22.03 0.22 -3.55 16 9 C -0.10 -3.07 10.05 22.23 0.22 -2.84 16 10 C -0.13 -4.35 6.35 -20.20 -0.13 -4.48 16 11 C -0.19 -6.57 5.57 -18.62 -0.10 -6.68 16 12 C -0.03 -1.29 5.50 29.85 0.16 -1.12 16 13 C -0.08 -3.71 5.14 30.60 0.16 -3.55 16 14 C 0.02 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -32.38 9.11 25.60 0.23 -32.14 16 16 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 19 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.84 7.03 -2.39 -0.02 1.83 16 26 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.51 7.05 -2.39 -0.02 2.49 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.74 305.28 4.60 -67.14 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.23 Total: 10.90 kcal Atomic # 6 Polarization: -56.22 SS G_CDS: 3.12 Total: -53.10 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -0.78 Total: -72.40 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.74 4.60 -67.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.410 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds