Wall clock time and date at job start Mon Mar 30 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34235 * 125.03983 * 2 1 4 4 C 1.50699 * 126.49833 * 0.07715 * 3 2 1 5 5 C 1.52998 * 109.47331 * 89.99615 * 4 3 2 6 6 C 1.50699 * 109.47331 * 179.97438 * 5 4 3 7 7 H 1.08004 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00204 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99991 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46966 * 60.00318 * 10 8 6 12 12 H 1.48501 * 109.46914 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47084 * 299.99879 * 10 8 6 14 14 C 1.46490 * 106.99864 * 180.02562 * 3 2 1 15 15 C 1.39625 * 134.03006 * 180.02562 * 14 3 2 16 16 C 1.36624 * 119.76395 * 179.97438 * 15 14 3 17 17 C 1.38834 * 120.52931 * 0.04014 * 16 15 14 18 18 C 1.37750 * 120.66430 * 359.96014 * 17 16 15 19 19 C 1.39130 * 119.77523 * 0.02562 * 18 17 16 20 20 N 1.36835 * 125.03019 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.06450 * 359.70364 * 20 2 1 22 22 H 1.08996 * 109.47246 * 269.98354 * 1 2 3 23 23 H 1.09004 * 109.46887 * 29.98015 * 1 2 3 24 24 H 1.08994 * 109.47222 * 149.98030 * 1 2 3 25 25 H 1.09003 * 109.47234 * 209.99751 * 4 3 2 26 26 H 1.09001 * 109.47353 * 329.99317 * 4 3 2 27 27 H 1.09002 * 109.47261 * 299.99716 * 5 4 3 28 28 H 1.08996 * 109.47425 * 59.99927 * 5 4 3 29 29 H 0.97000 * 120.00087 * 179.97438 * 9 8 6 30 30 H 1.08000 * 120.12044 * 359.97438 * 15 14 3 31 31 H 1.07998 * 119.73572 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.66959 * 179.97438 * 17 16 15 33 33 H 1.07997 * 120.10918 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47296 * 89.99931 * 21 20 2 35 35 H 1.09000 * 109.47075 * 209.99784 * 21 20 2 36 36 H 1.09001 * 109.47124 * 329.99992 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 1.8005 2.5285 0.0016 5 6 1.6405 3.0111 1.4446 6 6 1.1639 4.4408 1.4463 7 1 0.9926 4.9540 0.5115 8 6 0.9474 5.0940 2.6410 9 7 1.1564 4.4692 3.7793 10 14 0.3573 6.8663 2.6430 11 1 -0.9503 6.9534 1.9445 12 1 0.2019 7.3347 4.0436 13 1 1.3505 7.7195 1.9425 14 6 3.6706 0.6454 -0.0006 15 6 4.9042 1.2993 -0.0005 16 6 6.0590 0.5691 -0.0007 17 6 6.0159 -0.8185 -0.0019 18 6 4.8098 -1.4840 -0.0021 19 6 3.6215 -0.7604 -0.0016 20 7 2.2925 -1.1205 -0.0005 21 6 1.7937 -2.4979 0.0051 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5141 25 1 2.5291 3.1554 -0.5125 26 1 0.8408 2.5917 -0.5112 27 1 0.9119 2.3843 1.9588 28 1 2.6002 2.9480 1.9575 29 1 1.0045 4.9289 4.6198 30 1 4.9455 2.3785 -0.0002 31 1 7.0129 1.0754 -0.0001 32 1 6.9372 -1.3820 -0.0025 33 1 4.7867 -2.5637 -0.0027 34 1 1.6656 -2.8421 -1.0211 35 1 2.5090 -3.1413 0.5175 36 1 0.8354 -2.5352 0.5231 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082533671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:34 Heat of formation + Delta-G solvation = 40.040945 kcal Electronic energy + Delta-G solvation = -16913.193793 eV Core-core repulsion = 14361.987620 eV Total energy + Delta-G solvation = -2551.206173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02682 -36.89474 -34.44292 -32.60989 -30.89943 -30.25387 -29.77921 -26.67276 -26.22629 -23.97862 -21.57609 -21.35810 -20.47423 -18.47861 -16.50525 -16.14080 -15.96958 -15.23867 -14.77233 -14.40125 -13.84550 -13.61984 -13.04604 -13.00876 -12.70877 -12.53991 -12.30705 -12.08089 -11.83651 -11.81835 -11.13651 -11.00818 -10.83191 -10.74586 -10.59336 -10.39999 -9.64020 -9.62781 -9.02698 -8.88997 -8.26514 -7.70557 -6.97983 -5.91684 -3.94420 1.50283 1.98748 3.09211 3.14619 3.37658 3.41913 3.44556 4.30255 4.52279 4.84956 4.97271 5.10969 5.20801 5.28990 5.37389 5.42473 5.43330 5.57518 5.79830 5.83347 5.87854 5.94239 6.18748 6.25137 6.34282 6.41511 6.68033 6.82468 6.89041 7.00865 7.12842 7.22204 7.39036 7.64294 7.72216 7.79760 7.98460 8.11326 8.51152 9.13402 9.68967 11.19163 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.006056 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.295598 B = 4622.261407 C = 5336.968580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.057 3.943 3 C -0.135 4.135 4 C -0.042 4.042 5 C 0.032 3.968 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.098 4.098 15 C -0.058 4.058 16 C -0.159 4.159 17 C -0.106 4.106 18 C -0.138 4.138 19 C 0.097 3.903 20 N -0.490 5.490 21 C 0.083 3.917 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.014 0.986 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -13.519 -8.244 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.005 4.005 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.103 4.103 15 C -0.077 4.077 16 C -0.178 4.178 17 C -0.125 4.125 18 C -0.159 4.159 19 C -0.009 4.009 20 N -0.176 5.176 21 C -0.059 4.059 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.479 -13.814 -8.050 16.363 hybrid contribution -0.267 0.791 0.239 0.868 sum 3.212 -13.024 -7.810 15.522 Atomic orbital electron populations 1.20391 0.88069 1.02787 1.03058 1.20044 0.93270 0.84792 1.06580 1.20597 0.90000 0.95734 1.07816 1.20170 0.98915 0.87887 1.01066 1.19023 0.97079 0.95083 0.89296 1.21265 1.44572 0.97810 0.92176 0.92741 1.25015 0.95757 0.97911 0.95704 1.69971 1.49375 1.36912 0.97218 0.86695 0.79307 0.85354 0.76851 1.20295 1.21383 1.20259 1.19186 0.93650 0.91668 1.05825 1.20373 0.90496 0.99907 0.96910 1.20535 0.97787 0.93835 1.05691 1.20670 0.96243 0.94436 1.01139 1.19863 0.89888 0.98276 1.07866 1.18201 0.84266 0.94093 1.04385 1.43584 1.03714 1.05403 1.64862 1.21783 1.00794 0.81114 1.02195 0.90604 0.89560 0.92422 0.92661 0.92655 0.96755 0.96605 0.93063 0.85884 0.86503 0.86441 0.87112 0.91977 0.90656 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.56 36.01 0.34 -0.89 16 2 C 0.06 1.01 6.83 -81.77 -0.56 0.45 16 3 C -0.14 -2.74 5.57 -102.71 -0.57 -3.31 16 4 C -0.04 -0.93 5.44 -27.88 -0.15 -1.08 16 5 C 0.03 0.87 4.96 -27.88 -0.14 0.73 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C -0.10 -1.92 6.35 -105.14 -0.67 -2.59 16 15 C -0.06 -1.04 10.05 -39.65 -0.40 -1.44 16 16 C -0.16 -2.40 9.97 -39.94 -0.40 -2.80 16 17 C -0.11 -1.47 10.01 -39.54 -0.40 -1.86 16 18 C -0.14 -2.02 9.96 -39.43 -0.39 -2.42 16 19 C 0.10 1.67 6.81 -83.99 -0.57 1.10 16 20 N -0.49 -7.81 3.18 -117.20 -0.37 -8.18 16 21 C 0.08 0.90 10.59 59.85 0.63 1.53 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.09 1.26 7.04 -51.93 -0.37 0.89 16 24 H 0.06 0.65 7.58 -51.93 -0.39 0.26 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.14 7.05 -51.93 -0.37 0.78 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -32.90 304.27 -9.03 -41.93 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.28 Total: -2.19 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.68 Total: -26.27 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.36 Total: -34.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.90 -9.03 -41.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.973 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds