Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34235 * 125.03983 * 2 1 4 4 C 1.50699 * 126.49833 * 0.07715 * 3 2 1 5 5 C 1.52998 * 109.47331 * 89.99615 * 4 3 2 6 6 C 1.50699 * 109.47331 * 179.97438 * 5 4 3 7 7 H 1.08004 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00204 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99991 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46966 * 60.00318 * 10 8 6 12 12 H 1.48501 * 109.46914 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47084 * 299.99879 * 10 8 6 14 14 C 1.46490 * 106.99864 * 180.02562 * 3 2 1 15 15 C 1.39625 * 134.03006 * 180.02562 * 14 3 2 16 16 C 1.36624 * 119.76395 * 179.97438 * 15 14 3 17 17 C 1.38834 * 120.52931 * 0.04014 * 16 15 14 18 18 C 1.37750 * 120.66430 * 359.96014 * 17 16 15 19 19 C 1.39130 * 119.77523 * 0.02562 * 18 17 16 20 20 N 1.36835 * 125.03019 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.06450 * 359.70364 * 20 2 1 22 22 H 1.08996 * 109.47246 * 269.98354 * 1 2 3 23 23 H 1.09004 * 109.46887 * 29.98015 * 1 2 3 24 24 H 1.08994 * 109.47222 * 149.98030 * 1 2 3 25 25 H 1.09003 * 109.47234 * 209.99751 * 4 3 2 26 26 H 1.09001 * 109.47353 * 329.99317 * 4 3 2 27 27 H 1.09002 * 109.47261 * 299.99716 * 5 4 3 28 28 H 1.08996 * 109.47425 * 59.99927 * 5 4 3 29 29 H 0.97000 * 120.00087 * 179.97438 * 9 8 6 30 30 H 1.08000 * 120.12044 * 359.97438 * 15 14 3 31 31 H 1.07998 * 119.73572 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.66959 * 179.97438 * 17 16 15 33 33 H 1.07997 * 120.10918 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47296 * 89.99931 * 21 20 2 35 35 H 1.09000 * 109.47075 * 209.99784 * 21 20 2 36 36 H 1.09001 * 109.47124 * 329.99992 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 1.8005 2.5285 0.0016 5 6 1.6405 3.0111 1.4446 6 6 1.1639 4.4408 1.4463 7 1 0.9926 4.9540 0.5115 8 6 0.9474 5.0940 2.6410 9 7 1.1564 4.4692 3.7793 10 14 0.3573 6.8663 2.6430 11 1 -0.9503 6.9534 1.9445 12 1 0.2019 7.3347 4.0436 13 1 1.3505 7.7195 1.9425 14 6 3.6706 0.6454 -0.0006 15 6 4.9042 1.2993 -0.0005 16 6 6.0590 0.5691 -0.0007 17 6 6.0159 -0.8185 -0.0019 18 6 4.8098 -1.4840 -0.0021 19 6 3.6215 -0.7604 -0.0016 20 7 2.2925 -1.1205 -0.0005 21 6 1.7937 -2.4979 0.0051 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5141 25 1 2.5291 3.1554 -0.5125 26 1 0.8408 2.5917 -0.5112 27 1 0.9119 2.3843 1.9588 28 1 2.6002 2.9480 1.9575 29 1 1.0045 4.9289 4.6198 30 1 4.9455 2.3785 -0.0002 31 1 7.0129 1.0754 -0.0001 32 1 6.9372 -1.3820 -0.0025 33 1 4.7867 -2.5637 -0.0027 34 1 1.6656 -2.8421 -1.0211 35 1 2.5090 -3.1413 0.5175 36 1 0.8354 -2.5352 0.5231 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082533671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = 22.340848 kcal Electronic energy + Delta-G solvation = -16913.961327 eV Core-core repulsion = 14361.987620 eV Total energy + Delta-G solvation = -2551.973707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28068 -38.09272 -36.22102 -34.46940 -32.16247 -31.89816 -30.99941 -27.96844 -27.81178 -25.59401 -23.16397 -22.77055 -21.87604 -19.84978 -18.49971 -17.43587 -17.36720 -16.56551 -16.30047 -15.95320 -15.23958 -14.80250 -14.59706 -14.45481 -14.01970 -13.88367 -13.66957 -13.49074 -13.43452 -12.92414 -12.82345 -12.76024 -12.47469 -12.34661 -11.95336 -11.81158 -11.58125 -11.47560 -11.15651 -10.53308 -10.29514 -8.94638 -8.34123 -8.14338 -6.29479 0.25436 0.75820 1.40262 1.44414 1.52107 1.76466 1.97343 2.43033 3.04222 3.15078 3.81725 3.82936 3.99139 4.15744 4.29698 4.39298 4.45504 4.53098 4.57510 4.63099 4.68708 4.72228 4.89044 4.94094 4.99437 5.05454 5.15530 5.21937 5.29311 5.52263 5.59676 5.74114 5.80302 5.87836 5.94024 6.04234 6.26971 6.36611 6.55250 6.87746 7.39704 8.94629 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.006056 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.295598 B = 4622.261407 C = 5336.968580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.068 3.932 3 C -0.192 4.192 4 C -0.023 4.023 5 C 0.046 3.954 6 C -0.543 4.543 7 H 0.062 0.938 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.268 1.268 14 C -0.136 4.136 15 C -0.096 4.096 16 C -0.153 4.153 17 C -0.103 4.103 18 C -0.133 4.133 19 C 0.079 3.921 20 N -0.488 5.488 21 C 0.073 3.927 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.045 0.955 26 H 0.064 0.936 27 H -0.011 1.011 28 H -0.024 1.024 29 H 0.263 0.737 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -15.206 -9.130 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.061 4.061 5 C 0.009 3.991 6 C -0.581 4.581 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.141 4.141 15 C -0.115 4.115 16 C -0.172 4.172 17 C -0.122 4.122 18 C -0.153 4.153 19 C -0.027 4.027 20 N -0.173 5.173 21 C -0.067 4.067 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.007 0.993 28 H -0.006 1.006 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.590 -15.534 -8.955 18.287 hybrid contribution -0.235 1.204 0.523 1.334 sum 3.356 -14.330 -8.433 16.962 Atomic orbital electron populations 1.20466 0.86039 1.04457 1.03196 1.20418 0.94570 0.84962 1.03902 1.20513 0.91604 0.95328 1.12432 1.19787 0.99140 0.89689 0.97480 1.18810 0.93881 0.94494 0.91928 1.21698 1.44764 0.98825 0.92789 0.91980 1.26019 0.95602 1.03115 0.95088 1.70127 1.50313 1.39137 0.97998 0.85478 0.79299 0.78929 0.77199 1.18777 1.20832 1.19250 1.19495 0.93655 0.93559 1.07364 1.20476 0.91648 0.99550 0.99802 1.20891 0.97639 0.94887 1.03781 1.21167 0.97756 0.93918 0.99338 1.20335 0.88910 1.00051 1.06001 1.18553 0.85750 0.93408 1.05000 1.43876 1.03120 1.06778 1.63485 1.22182 1.01923 0.78417 1.04176 0.91065 0.90093 0.88565 0.93594 0.91786 0.99307 1.00606 0.92847 0.87673 0.84080 0.82324 0.83511 0.89750 0.88830 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.38 9.56 71.24 0.68 -1.70 16 2 C 0.07 2.41 6.83 40.87 0.28 2.69 16 3 C -0.19 -8.21 5.57 -18.63 -0.10 -8.31 16 4 C -0.02 -1.08 5.44 29.85 0.16 -0.92 16 5 C 0.05 2.64 4.96 29.85 0.15 2.79 16 6 C -0.54 -32.38 9.11 25.60 0.23 -32.14 16 7 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.94 -59.35 13.29 21.45 0.28 -59.06 16 10 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 C -0.14 -5.53 6.35 -20.20 -0.13 -5.66 16 15 C -0.10 -3.63 10.05 22.23 0.22 -3.40 16 16 C -0.15 -4.50 9.97 22.03 0.22 -4.28 16 17 C -0.10 -2.55 10.01 22.30 0.22 -2.33 16 18 C -0.13 -3.51 9.96 22.37 0.22 -3.29 16 19 C 0.08 2.68 6.81 39.03 0.27 2.94 16 20 N -0.49 -14.88 3.18 -524.70 -1.67 -16.54 16 21 C 0.07 1.33 10.59 127.77 1.35 2.68 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.08 2.36 7.04 -2.39 -0.02 2.34 16 24 H 0.10 1.92 7.58 -2.39 -0.02 1.90 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.79 7.05 -2.39 -0.02 2.77 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 29 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.09 1.45 7.51 -2.39 -0.02 1.43 16 Total: -1.00 -75.27 304.27 5.93 -69.34 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.05 Total: 9.27 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 4.24 Total: -50.51 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.38 Total: -75.61 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -75.27 5.93 -69.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.680 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds