Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34246 * 125.03437 * 2 1 4 4 C 1.50698 * 126.50018 * 359.92690 * 3 2 1 5 5 C 1.50694 * 109.47166 * 90.02372 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.46489 * 106.99689 * 180.18817 * 3 2 1 14 14 C 1.39623 * 134.03457 * 179.73507 * 13 3 2 15 15 C 1.36624 * 119.76829 * 180.02562 * 14 13 3 16 16 C 1.50701 * 119.73983 * 179.97438 * 15 14 13 17 17 C 1.38834 * 120.52492 * 0.02562 * 15 14 13 18 18 C 1.37754 * 120.66499 * 359.58161 * 17 15 14 19 19 C 1.39119 * 119.78057 * 0.63497 * 18 17 15 20 20 N 1.36829 * 125.03533 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.06641 * 0.06123 * 20 2 1 22 22 H 1.09011 * 109.47144 * 90.00306 * 1 2 3 23 23 H 1.09001 * 109.47327 * 210.00004 * 1 2 3 24 24 H 1.09001 * 109.47502 * 330.00661 * 1 2 3 25 25 H 1.08998 * 109.46890 * 330.02362 * 4 3 2 26 26 H 1.09002 * 109.46875 * 210.02165 * 4 3 2 27 27 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 28 28 H 1.08003 * 120.11713 * 0.02562 * 14 13 3 29 29 H 1.08992 * 109.46986 * 89.99620 * 16 15 14 30 30 H 1.08999 * 109.47184 * 210.00064 * 16 15 14 31 31 H 1.09006 * 109.46838 * 330.00003 * 16 15 14 32 32 H 1.08002 * 119.66650 * 179.97438 * 17 15 14 33 33 H 1.08007 * 120.10451 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.46799 * 89.99117 * 21 20 2 35 35 H 1.08991 * 109.47598 * 210.00105 * 21 20 2 36 36 H 1.09001 * 109.46718 * 330.00179 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5286 -0.0015 5 6 1.6403 3.0063 1.4187 6 1 1.8616 2.3413 2.2404 7 6 1.2112 4.2925 1.6692 8 7 1.0663 4.7077 2.9087 9 14 0.8277 5.4426 0.2482 10 1 -0.6021 5.3044 -0.1285 11 1 1.0982 6.8439 0.6585 12 1 1.6821 5.0938 -0.9154 13 6 3.6705 0.6456 -0.0046 14 6 4.9041 1.2996 -0.0113 15 6 6.0589 0.5695 -0.0148 16 6 7.3900 1.2759 -0.0226 17 6 6.0158 -0.8182 -0.0122 18 6 4.8097 -1.4837 0.0025 19 6 3.6214 -0.7603 0.0016 20 7 2.2924 -1.1204 0.0005 21 6 1.7938 -2.4979 -0.0002 22 1 -0.3634 -0.0001 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.8414 2.5909 -0.5161 26 1 2.5298 3.1547 -0.5154 27 1 0.7649 5.6126 3.0849 28 1 4.9453 2.3788 -0.0138 29 1 7.7155 1.4489 1.0031 30 1 8.1258 0.6589 -0.5383 31 1 7.2913 2.2312 -0.5384 32 1 6.9372 -1.3816 -0.0154 33 1 4.7868 -2.5635 0.0040 34 1 1.6709 -2.8393 -1.0280 35 1 2.5064 -3.1425 0.5141 36 1 0.8328 -2.5366 0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = 44.377688 kcal Electronic energy + Delta-G solvation = -17116.305209 eV Core-core repulsion = 14565.287091 eV Total energy + Delta-G solvation = -2551.018118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83983 -37.17168 -33.90895 -32.14297 -31.81340 -30.18584 -28.94765 -27.93089 -25.33380 -24.74327 -22.13228 -21.18584 -20.12092 -18.30440 -16.67474 -16.19081 -15.58613 -15.06753 -14.60057 -14.12616 -13.63807 -13.44413 -13.31183 -12.87081 -12.69537 -12.61961 -12.28963 -12.07209 -11.81544 -11.73916 -11.62129 -11.45224 -10.90924 -10.67067 -10.40662 -10.19634 -9.97881 -9.94448 -9.29267 -8.74998 -8.49297 -7.42890 -6.73409 -5.98352 -3.95350 1.67421 2.10136 3.28599 3.33089 3.38238 3.41697 3.45731 4.42071 4.49032 4.98385 5.10294 5.25767 5.31370 5.33661 5.37621 5.43217 5.51352 5.67854 5.75638 5.92574 5.94941 5.99850 6.03606 6.21472 6.23859 6.40334 6.54139 6.58218 6.70714 6.87943 7.10252 7.19412 7.35862 7.43056 7.60331 7.80154 7.87813 7.96167 8.63899 9.09670 9.63193 11.14993 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.008387 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.918721 B = 3337.886832 C = 4409.460478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.046 3.954 3 C -0.105 4.105 4 C 0.050 3.950 5 C -0.503 4.503 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C -0.094 4.094 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.103 4.103 17 C -0.105 4.105 18 C -0.136 4.136 19 C 0.092 3.908 20 N -0.492 5.492 21 C 0.085 3.915 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -12.335 -7.640 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.111 4.111 4 C 0.012 3.988 5 C -0.541 4.541 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.099 4.099 14 C -0.072 4.072 15 C -0.135 4.135 16 C -0.159 4.159 17 C -0.124 4.124 18 C -0.157 4.157 19 C -0.014 4.014 20 N -0.177 5.177 21 C -0.057 4.057 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.758 -12.490 -7.532 15.342 hybrid contribution -0.264 0.490 -0.479 0.734 sum 4.494 -12.001 -8.010 15.112 Atomic orbital electron populations 1.20377 0.88313 1.03606 1.01861 1.19993 0.93202 0.84666 1.07797 1.20517 0.89542 0.95730 1.05347 1.18144 0.95405 0.87244 0.97988 1.21011 1.44240 0.98012 0.90872 0.91044 1.24999 0.95214 0.97854 0.95328 1.69913 1.47700 1.17991 1.18704 0.86859 0.79134 0.80341 0.83539 1.20281 1.21389 1.18875 1.19191 0.93773 0.91496 1.05415 1.20214 0.90011 0.99645 0.97324 1.19253 0.94935 0.93483 1.05783 1.20647 0.93823 0.99797 1.01671 1.20494 0.96169 0.93625 1.02103 1.19800 0.89867 0.98073 1.08001 1.18194 0.84258 0.94147 1.04828 1.43540 1.03683 1.05282 1.65223 1.21742 1.00662 0.81346 1.01995 0.91763 0.92547 0.88684 0.96183 0.95749 0.92814 0.86007 0.91927 0.92435 0.92015 0.86656 0.87260 0.92175 0.90883 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.62 36.00 0.35 -1.03 16 2 C 0.05 0.91 6.83 -81.77 -0.56 0.36 16 3 C -0.11 -2.39 5.50 -102.71 -0.57 -2.96 16 4 C 0.05 1.24 4.11 -29.04 -0.12 1.12 16 5 C -0.50 -14.53 9.65 -34.44 -0.33 -14.86 16 6 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 13 C -0.09 -2.01 6.35 -105.14 -0.67 -2.68 16 14 C -0.05 -1.05 9.67 -39.65 -0.38 -1.44 16 15 C -0.13 -2.20 5.85 -104.98 -0.61 -2.82 16 16 C -0.10 -1.34 9.99 36.01 0.36 -0.98 16 17 C -0.10 -1.60 9.66 -39.54 -0.38 -1.98 16 18 C -0.14 -2.18 9.96 -39.43 -0.39 -2.58 16 19 C 0.09 1.74 6.81 -83.99 -0.57 1.16 16 20 N -0.49 -8.62 3.18 -117.20 -0.37 -8.99 16 21 C 0.08 1.03 10.81 59.85 0.65 1.67 16 22 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 23 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 24 H 0.09 1.75 7.66 -51.93 -0.40 1.35 16 25 H 0.02 0.48 7.12 -51.93 -0.37 0.11 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.83 6.88 -51.93 -0.36 0.48 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -32.82 300.58 -8.31 -41.13 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.24 Total: -1.23 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -3.33 Total: -25.15 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.40 Total: -36.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.82 -8.31 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.505 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds