Wall clock time and date at job start Mon Mar 30 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34246 * 125.03437 * 2 1 4 4 C 1.50698 * 126.50018 * 359.92690 * 3 2 1 5 5 C 1.50694 * 109.47166 * 90.02372 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.46489 * 106.99689 * 180.18817 * 3 2 1 14 14 C 1.39623 * 134.03457 * 179.73507 * 13 3 2 15 15 C 1.36624 * 119.76829 * 180.02562 * 14 13 3 16 16 C 1.50701 * 119.73983 * 179.97438 * 15 14 13 17 17 C 1.38834 * 120.52492 * 0.02562 * 15 14 13 18 18 C 1.37754 * 120.66499 * 359.58161 * 17 15 14 19 19 C 1.39119 * 119.78057 * 0.63497 * 18 17 15 20 20 N 1.36829 * 125.03533 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.06641 * 0.06123 * 20 2 1 22 22 H 1.09011 * 109.47144 * 90.00306 * 1 2 3 23 23 H 1.09001 * 109.47327 * 210.00004 * 1 2 3 24 24 H 1.09001 * 109.47502 * 330.00661 * 1 2 3 25 25 H 1.08998 * 109.46890 * 330.02362 * 4 3 2 26 26 H 1.09002 * 109.46875 * 210.02165 * 4 3 2 27 27 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 28 28 H 1.08003 * 120.11713 * 0.02562 * 14 13 3 29 29 H 1.08992 * 109.46986 * 89.99620 * 16 15 14 30 30 H 1.08999 * 109.47184 * 210.00064 * 16 15 14 31 31 H 1.09006 * 109.46838 * 330.00003 * 16 15 14 32 32 H 1.08002 * 119.66650 * 179.97438 * 17 15 14 33 33 H 1.08007 * 120.10451 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.46799 * 89.99117 * 21 20 2 35 35 H 1.08991 * 109.47598 * 210.00105 * 21 20 2 36 36 H 1.09001 * 109.46718 * 330.00179 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5286 -0.0015 5 6 1.6403 3.0063 1.4187 6 1 1.8616 2.3413 2.2404 7 6 1.2112 4.2925 1.6692 8 7 1.0663 4.7077 2.9087 9 14 0.8277 5.4426 0.2482 10 1 -0.6021 5.3044 -0.1285 11 1 1.0982 6.8439 0.6585 12 1 1.6821 5.0938 -0.9154 13 6 3.6705 0.6456 -0.0046 14 6 4.9041 1.2996 -0.0113 15 6 6.0589 0.5695 -0.0148 16 6 7.3900 1.2759 -0.0226 17 6 6.0158 -0.8182 -0.0122 18 6 4.8097 -1.4837 0.0025 19 6 3.6214 -0.7603 0.0016 20 7 2.2924 -1.1204 0.0005 21 6 1.7938 -2.4979 -0.0002 22 1 -0.3634 -0.0001 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 0.8414 2.5909 -0.5161 26 1 2.5298 3.1547 -0.5154 27 1 0.7649 5.6126 3.0849 28 1 4.9453 2.3788 -0.0138 29 1 7.7155 1.4489 1.0031 30 1 8.1258 0.6589 -0.5383 31 1 7.2913 2.2312 -0.5384 32 1 6.9372 -1.3816 -0.0154 33 1 4.7868 -2.5635 0.0040 34 1 1.6709 -2.8393 -1.0280 35 1 2.5064 -3.1425 0.5141 36 1 0.8328 -2.5366 0.5128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:14 Heat of formation + Delta-G solvation = 25.625383 kcal Electronic energy + Delta-G solvation = -17117.118370 eV Core-core repulsion = 14565.287091 eV Total energy + Delta-G solvation = -2551.831279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.21594 -38.46935 -35.71917 -34.04779 -33.05672 -31.55349 -30.71392 -29.13144 -26.76012 -26.14600 -23.94984 -22.54808 -21.46498 -19.78653 -18.92496 -17.55800 -16.92192 -16.38866 -16.14679 -15.86983 -15.05928 -14.72831 -14.61538 -14.42089 -14.19861 -13.99352 -13.78155 -13.43694 -13.19120 -13.08321 -12.88236 -12.81126 -12.49340 -12.30788 -12.10402 -11.86082 -11.66004 -11.45166 -11.41917 -10.75046 -10.23168 -8.77915 -8.28496 -8.17909 -6.29522 0.30148 0.76464 1.34874 1.37766 1.50504 1.87241 2.03887 2.37183 3.03421 3.07088 3.84576 3.90899 4.01888 4.16411 4.24455 4.40691 4.47969 4.53801 4.60493 4.68848 4.70101 4.79007 4.86521 4.92053 5.03139 5.05416 5.11648 5.13676 5.23795 5.30333 5.45840 5.61329 5.69385 5.88925 6.00417 6.10930 6.34439 6.44090 6.62532 6.76272 7.33052 8.90580 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.008387 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.918721 B = 3337.886832 C = 4409.460478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.058 3.942 3 C -0.172 4.172 4 C 0.065 3.935 5 C -0.506 4.506 6 H 0.018 0.982 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.948 3.052 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.253 1.253 13 C -0.132 4.132 14 C -0.096 4.096 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.103 4.103 18 C -0.128 4.128 19 C 0.074 3.926 20 N -0.489 5.489 21 C 0.075 3.925 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.012 0.988 27 H 0.266 0.734 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.625 -14.791 -9.460 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.179 4.179 4 C 0.027 3.973 5 C -0.544 4.544 6 H 0.037 0.963 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.177 1.177 13 C -0.137 4.137 14 C -0.115 4.115 15 C -0.128 4.128 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.148 4.148 19 C -0.033 4.033 20 N -0.173 5.173 21 C -0.065 4.065 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.396 -14.992 -9.360 18.480 hybrid contribution -0.384 1.113 0.166 1.189 sum 5.012 -13.880 -9.194 17.387 Atomic orbital electron populations 1.20432 0.86226 1.03717 1.03546 1.20363 0.94552 0.84915 1.04922 1.20477 0.91466 0.95410 1.10512 1.17844 0.95357 0.89222 0.94891 1.21159 1.43879 0.97585 0.91818 0.96309 1.25959 0.94870 0.99681 0.98431 1.70074 1.49119 1.18778 1.21323 0.85685 0.79890 0.77535 0.79773 1.18340 1.20773 1.17669 1.19498 0.93665 0.93564 1.06989 1.20288 0.91321 0.99014 1.00840 1.19693 0.95141 0.94595 1.03374 1.20719 0.92623 1.00031 1.02476 1.21006 0.97742 0.93060 1.00393 1.20287 0.88769 0.99930 1.05828 1.18543 0.85804 0.93336 1.05582 1.43812 1.03042 1.06667 1.63828 1.22154 1.01839 0.78477 1.04052 0.89151 0.89438 0.91508 0.95305 0.96927 0.92503 0.88304 0.91307 0.89338 0.92269 0.82411 0.83414 0.89881 0.88889 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.61 9.62 71.23 0.69 -1.92 16 2 C 0.06 2.30 6.83 40.87 0.28 2.58 16 3 C -0.17 -8.20 5.50 -18.62 -0.10 -8.30 16 4 C 0.06 3.38 4.11 29.10 0.12 3.50 16 5 C -0.51 -31.16 9.65 25.60 0.25 -30.91 16 6 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 7 C 0.01 0.42 5.47 84.66 0.46 0.88 16 8 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 9 Si 0.95 45.81 27.47 68.60 1.88 47.69 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 13 C -0.13 -5.91 6.35 -20.20 -0.13 -6.04 16 14 C -0.10 -3.98 9.67 22.23 0.22 -3.77 16 15 C -0.13 -4.10 5.85 -20.10 -0.12 -4.22 16 16 C -0.10 -2.50 9.99 71.24 0.71 -1.78 16 17 C -0.10 -2.82 9.66 22.30 0.22 -2.60 16 18 C -0.13 -3.69 9.96 22.37 0.22 -3.47 16 19 C 0.07 2.72 6.81 39.03 0.27 2.99 16 20 N -0.49 -16.40 3.18 -524.70 -1.67 -18.07 16 21 C 0.07 1.54 10.81 127.77 1.38 2.92 16 22 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 23 H 0.09 2.19 6.92 -2.39 -0.02 2.17 16 24 H 0.07 2.51 7.66 -2.39 -0.02 2.49 16 25 H 0.03 1.41 7.12 -2.39 -0.02 1.40 16 26 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 27 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.06 1.47 8.08 -2.38 -0.02 1.45 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 36 H 0.09 1.64 6.88 -2.39 -0.02 1.62 16 Total: -1.00 -77.39 300.58 5.97 -71.41 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.00 Total: 10.46 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 4.46 Total: -50.15 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.37 Total: -79.41 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -77.39 5.97 -71.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.040 kcal (2) G-P(sol) polarization free energy of solvation -77.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds