Wall clock time and date at job start Mon Mar 30 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46995 * 2 1 4 4 C 1.38828 * 119.73596 * 90.00239 * 3 2 1 5 5 C 1.37747 * 120.66705 * 180.02562 * 4 3 2 6 6 C 1.39121 * 119.77688 * 0.02562 * 5 4 3 7 7 C 1.40668 * 119.33556 * 0.17504 * 6 5 4 8 8 C 1.36629 * 119.73189 * 270.45948 * 3 2 1 9 9 C 1.46495 * 106.04194 * 180.27253 * 7 6 5 10 10 C 1.50697 * 126.50520 * 179.78262 * 9 7 6 11 11 C 1.50700 * 109.47274 * 84.98012 * 10 9 7 12 12 H 1.07999 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00294 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99590 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47024 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46823 * 120.00193 * 15 13 11 18 18 H 1.48502 * 109.47072 * 239.99652 * 15 13 11 19 19 C 1.34244 * 106.99326 * 359.74421 * 9 7 6 20 20 N 1.36833 * 109.93092 * 0.02562 * 19 9 7 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 9 22 22 H 1.08999 * 109.47238 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47470 * 300.00288 * 1 2 3 24 24 H 1.08999 * 109.46939 * 60.00261 * 1 2 3 25 25 H 1.09005 * 109.47137 * 239.99886 * 2 1 3 26 26 H 1.09003 * 109.47328 * 120.00060 * 2 1 3 27 27 H 1.08000 * 119.66640 * 0.02562 * 4 3 2 28 28 H 1.07994 * 120.11080 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.12232 * 359.47379 * 8 3 2 30 30 H 1.08998 * 109.47129 * 204.98385 * 10 9 7 31 31 H 1.09001 * 109.46675 * 324.98318 * 10 9 7 32 32 H 0.97003 * 119.99581 * 180.02562 * 14 13 11 33 33 H 1.07998 * 125.03389 * 179.97438 * 19 9 7 34 34 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 35 35 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 36 36 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2055 5 6 2.7204 3.3688 1.2279 6 6 2.9562 4.0390 0.0317 7 6 2.7180 3.3782 -1.1870 8 6 2.2492 2.0629 -1.1864 9 6 3.0633 4.3354 -2.2408 10 6 2.9835 4.1000 -3.7271 11 6 1.5828 4.3827 -4.2060 12 1 0.8263 4.7014 -3.5042 13 6 1.2672 4.2345 -5.5399 14 7 2.1884 3.8459 -6.3943 15 14 -0.4688 4.5855 -6.1335 16 1 -1.3101 5.0037 -4.9836 17 1 -0.4358 5.6727 -7.1446 18 1 -1.0406 3.3587 -6.7444 19 6 3.4637 5.4625 -1.6312 20 7 3.4035 5.3050 -0.2733 21 6 3.7654 6.3292 0.7096 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0791 1.5516 2.1351 28 1 2.8964 3.8650 2.1707 29 1 2.0694 1.5512 -2.1203 30 1 3.6827 4.7620 -4.2379 31 1 3.2396 3.0632 -3.9450 32 1 1.9664 3.7419 -7.3329 33 1 3.7864 6.3602 -2.1375 34 1 2.8871 6.9280 0.9507 35 1 4.5412 6.9728 0.2947 36 1 4.1374 5.8489 1.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:02 Heat of formation + Delta-G solvation = 40.321881 kcal Electronic energy + Delta-G solvation = -16878.242175 eV Core-core repulsion = 14327.048184 eV Total energy + Delta-G solvation = -2551.193991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68465 -37.24217 -33.74988 -32.94761 -32.08311 -29.28207 -28.84363 -27.52890 -25.22141 -23.29579 -22.33685 -21.90819 -19.95429 -18.59640 -16.33365 -16.05783 -15.75523 -14.91337 -14.83076 -14.38422 -14.01482 -13.48672 -13.16233 -12.94085 -12.57975 -12.41542 -12.22660 -12.02598 -11.92884 -11.65286 -11.20188 -10.89911 -10.70497 -10.64010 -10.44816 -10.38894 -10.09545 -9.59884 -9.36407 -8.70769 -8.33215 -7.47735 -6.77533 -5.93324 -3.96871 1.73104 2.13905 3.34003 3.36728 3.40959 3.45287 3.53798 4.43409 4.55641 5.00506 5.12853 5.18853 5.35153 5.36514 5.39480 5.47125 5.55418 5.61691 5.67841 5.82844 5.96449 6.05925 6.12555 6.21962 6.36508 6.46524 6.50290 6.63362 6.82524 6.97405 7.23805 7.41950 7.52485 7.64816 7.76386 7.96036 8.02724 8.06271 8.47951 9.08836 9.66264 11.14966 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.007920 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.147089 B = 3534.647596 C = 4707.039581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.141 4.141 6 C 0.092 3.908 7 C -0.098 4.098 8 C -0.046 4.046 9 C -0.105 4.105 10 C 0.080 3.920 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.007 3.993 20 N -0.497 5.497 21 C 0.087 3.913 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.160 0.840 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -1.352 14.813 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.161 4.161 6 C -0.015 4.015 7 C -0.103 4.103 8 C -0.065 4.065 9 C -0.111 4.111 10 C 0.043 3.957 11 C -0.541 4.541 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.113 4.113 20 N -0.183 5.183 21 C -0.055 4.055 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.178 0.822 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.662 -1.094 14.818 14.951 hybrid contribution -0.957 0.443 -0.351 1.112 sum 0.705 -0.651 14.467 14.498 Atomic orbital electron populations 1.21768 0.95443 1.00926 1.02293 1.20390 0.95686 0.93107 1.01969 1.19215 1.04766 0.96441 0.92860 1.20473 1.00761 0.93769 0.96995 1.19785 1.06793 0.95287 0.94284 1.18268 1.02243 0.85660 0.95314 1.19268 1.04201 0.94653 0.92176 1.20244 0.95987 0.92712 0.97523 1.21244 1.01307 0.91539 0.97035 1.17716 0.97094 0.97587 0.83311 1.21166 0.95429 1.44716 0.92782 0.92648 1.24998 0.97049 0.95518 0.96885 1.69972 1.32948 1.47735 1.03010 0.86553 0.85018 0.77886 0.78705 1.19784 1.21079 1.21016 1.21526 1.08533 1.00481 0.80800 1.43626 1.58399 1.10469 1.05760 1.21740 1.00731 0.90939 0.92109 0.93085 0.92962 0.92258 0.91419 0.91926 0.86801 0.87379 0.85915 0.95649 0.95465 0.93080 0.82236 0.92188 0.90522 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.07 -1.00 6.04 -27.88 -0.17 -1.16 16 3 C -0.13 -2.17 5.10 -104.98 -0.54 -2.71 16 4 C -0.10 -1.54 9.66 -39.54 -0.38 -1.92 16 5 C -0.14 -2.25 9.96 -39.43 -0.39 -2.64 16 6 C 0.09 1.73 6.81 -83.99 -0.57 1.15 16 7 C -0.10 -2.10 6.35 -105.13 -0.67 -2.77 16 8 C -0.05 -0.92 9.68 -39.64 -0.38 -1.30 16 9 C -0.11 -2.42 5.51 -102.71 -0.57 -2.99 16 10 C 0.08 2.13 5.50 -29.04 -0.16 1.98 16 11 C -0.50 -14.42 9.09 -34.44 -0.31 -14.73 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 C 0.01 0.15 11.21 -16.73 -0.19 -0.04 16 20 N -0.50 -8.64 3.18 -121.80 -0.39 -9.03 16 21 C 0.09 1.03 11.03 59.85 0.66 1.69 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -31.80 308.13 -8.88 -40.68 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.45 Total: -1.71 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.40 Total: -25.42 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.35 Total: -35.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.80 -8.88 -40.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.000 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds