Wall clock time and date at job start Mon Mar 30 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46995 * 2 1 4 4 C 1.38828 * 119.73596 * 90.00239 * 3 2 1 5 5 C 1.37747 * 120.66705 * 180.02562 * 4 3 2 6 6 C 1.39121 * 119.77688 * 0.02562 * 5 4 3 7 7 C 1.40668 * 119.33556 * 0.17504 * 6 5 4 8 8 C 1.36629 * 119.73189 * 270.45948 * 3 2 1 9 9 C 1.46495 * 106.04194 * 180.27253 * 7 6 5 10 10 C 1.50697 * 126.50520 * 179.78262 * 9 7 6 11 11 C 1.50700 * 109.47274 * 84.98012 * 10 9 7 12 12 H 1.07999 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00294 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99590 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47024 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46823 * 120.00193 * 15 13 11 18 18 H 1.48502 * 109.47072 * 239.99652 * 15 13 11 19 19 C 1.34244 * 106.99326 * 359.74421 * 9 7 6 20 20 N 1.36833 * 109.93092 * 0.02562 * 19 9 7 21 21 C 1.46499 * 125.06296 * 180.02562 * 20 19 9 22 22 H 1.08999 * 109.47238 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47470 * 300.00288 * 1 2 3 24 24 H 1.08999 * 109.46939 * 60.00261 * 1 2 3 25 25 H 1.09005 * 109.47137 * 239.99886 * 2 1 3 26 26 H 1.09003 * 109.47328 * 120.00060 * 2 1 3 27 27 H 1.08000 * 119.66640 * 0.02562 * 4 3 2 28 28 H 1.07994 * 120.11080 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.12232 * 359.47379 * 8 3 2 30 30 H 1.08998 * 109.47129 * 204.98385 * 10 9 7 31 31 H 1.09001 * 109.46675 * 324.98318 * 10 9 7 32 32 H 0.97003 * 119.99581 * 180.02562 * 14 13 11 33 33 H 1.07998 * 125.03389 * 179.97438 * 19 9 7 34 34 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 35 35 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 36 36 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2055 5 6 2.7204 3.3688 1.2279 6 6 2.9562 4.0390 0.0317 7 6 2.7180 3.3782 -1.1870 8 6 2.2492 2.0629 -1.1864 9 6 3.0633 4.3354 -2.2408 10 6 2.9835 4.1000 -3.7271 11 6 1.5828 4.3827 -4.2060 12 1 0.8263 4.7014 -3.5042 13 6 1.2672 4.2345 -5.5399 14 7 2.1884 3.8459 -6.3943 15 14 -0.4688 4.5855 -6.1335 16 1 -1.3101 5.0037 -4.9836 17 1 -0.4358 5.6727 -7.1446 18 1 -1.0406 3.3587 -6.7444 19 6 3.4637 5.4625 -1.6312 20 7 3.4035 5.3050 -0.2733 21 6 3.7654 6.3292 0.7096 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0791 1.5516 2.1351 28 1 2.8964 3.8650 2.1707 29 1 2.0694 1.5512 -2.1203 30 1 3.6827 4.7620 -4.2379 31 1 3.2396 3.0632 -3.9450 32 1 1.9664 3.7419 -7.3329 33 1 3.7864 6.3602 -2.1375 34 1 2.8871 6.9280 0.9507 35 1 4.5412 6.9728 0.2947 36 1 4.1374 5.8489 1.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:01 Heat of formation + Delta-G solvation = 23.695195 kcal Electronic energy + Delta-G solvation = -16878.963163 eV Core-core repulsion = 14327.048184 eV Total energy + Delta-G solvation = -2551.914978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09338 -38.54027 -35.68060 -34.11774 -33.85294 -30.86388 -30.23073 -29.01230 -26.76596 -24.88046 -23.89955 -23.24150 -21.24061 -20.14882 -18.47221 -17.58291 -17.10048 -16.45651 -16.11255 -16.07183 -15.17175 -14.85615 -14.41353 -14.35786 -14.11387 -13.90532 -13.86024 -13.43587 -13.20278 -13.03877 -12.88069 -12.62564 -12.49280 -12.01320 -11.79662 -11.74706 -11.71958 -11.44338 -11.32967 -10.58331 -10.23836 -8.87068 -8.38341 -8.04131 -6.29222 0.33268 0.78705 1.36504 1.37515 1.50985 1.94524 2.09690 2.42635 3.05948 3.12194 3.87310 3.99637 4.03252 4.11906 4.27598 4.37916 4.51153 4.59374 4.63669 4.68686 4.73829 4.81251 4.86104 5.07164 5.09179 5.13378 5.19365 5.29722 5.36349 5.43929 5.52661 5.74916 5.78107 5.91610 6.02882 6.09191 6.28003 6.44455 6.64386 6.82868 7.38562 8.92223 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.007920 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.147089 B = 3534.647596 C = 4707.039581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.097 4.097 5 C -0.129 4.129 6 C 0.078 3.922 7 C -0.135 4.135 8 C -0.087 4.087 9 C -0.166 4.166 10 C 0.096 3.904 11 C -0.518 4.518 12 H 0.045 0.955 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.276 1.276 19 C 0.027 3.973 20 N -0.491 5.491 21 C 0.078 3.922 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.092 0.908 30 H 0.004 0.996 31 H -0.010 1.010 32 H 0.265 0.735 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -0.909 18.195 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.150 4.150 6 C -0.029 4.029 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.173 4.173 10 C 0.058 3.942 11 C -0.557 4.557 12 H 0.063 0.937 13 C -0.194 4.194 14 N -0.572 5.572 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.197 1.197 18 H -0.202 1.202 19 C -0.096 4.096 20 N -0.176 5.176 21 C -0.062 4.062 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.176 0.824 28 H 0.167 0.833 29 H 0.110 0.890 30 H 0.022 0.978 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.814 -0.640 18.238 18.268 hybrid contribution -0.639 0.277 -1.313 1.486 sum 0.175 -0.363 16.925 16.930 Atomic orbital electron populations 1.21740 0.94724 1.02210 1.01441 1.20484 0.96216 0.91350 1.03158 1.19598 1.02662 0.97678 0.92218 1.20977 0.99130 0.93689 0.97797 1.20280 1.04713 0.95358 0.94606 1.18577 1.02825 0.86189 0.95281 1.19484 1.05863 0.95482 0.93160 1.20233 0.99281 0.93094 0.97975 1.20961 1.06318 0.94523 0.95463 1.17322 0.95661 0.94615 0.86572 1.21396 0.96217 1.44945 0.93103 0.93684 1.25900 1.01571 0.95039 0.96905 1.70093 1.35214 1.48402 1.03471 0.85443 0.79478 0.78171 0.78246 1.19402 1.19721 1.20173 1.21676 1.05946 0.99655 0.82339 1.43887 1.57070 1.11094 1.05502 1.22156 1.02139 0.90188 0.91725 0.90774 0.91922 0.94959 0.92242 0.88712 0.82438 0.83295 0.89020 0.97816 0.99150 0.92654 0.80418 0.90735 0.88513 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.89 71.98 0.71 -2.72 16 2 C -0.07 -1.90 6.04 29.85 0.18 -1.72 16 3 C -0.12 -3.88 5.10 -20.10 -0.10 -3.99 16 4 C -0.10 -2.61 9.66 22.29 0.22 -2.39 16 5 C -0.13 -3.65 9.96 22.37 0.22 -3.43 16 6 C 0.08 2.85 6.81 39.03 0.27 3.11 16 7 C -0.13 -6.09 6.35 -20.20 -0.13 -6.21 16 8 C -0.09 -3.68 9.68 22.23 0.22 -3.46 16 9 C -0.17 -8.16 5.51 -18.62 -0.10 -8.26 16 10 C 0.10 5.55 5.50 29.10 0.16 5.71 16 11 C -0.52 -31.57 9.09 25.60 0.23 -31.34 16 12 H 0.04 2.76 7.74 -2.91 -0.02 2.74 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 15 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 C 0.03 1.10 11.21 83.00 0.93 2.03 16 20 N -0.49 -16.31 3.18 -539.26 -1.71 -18.02 16 21 C 0.08 1.56 11.03 127.77 1.41 2.97 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.59 8.08 -2.38 -0.02 1.57 16 26 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 31 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.18 6.22 8.06 -2.91 -0.02 6.19 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.48 8.10 -2.38 -0.02 1.46 16 Total: -1.00 -74.38 308.13 6.31 -68.07 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.04 Total: 8.55 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 4.67 Total: -49.03 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.43 Total: -75.95 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.38 6.31 -68.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.766 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds