Wall clock time and date at job start Mon Mar 30 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47066 * 2 1 4 4 C 1.38830 * 119.73446 * 89.99975 * 3 2 1 5 5 C 1.37747 * 120.66518 * 179.71973 * 4 3 2 6 6 C 1.39131 * 119.78074 * 0.25422 * 5 4 3 7 7 N 1.37689 * 133.51077 * 179.97438 * 6 5 4 8 8 H 0.97000 * 125.06317 * 359.97438 * 7 6 5 9 9 C 1.36829 * 109.87137 * 180.02562 * 7 6 5 10 10 C 1.50703 * 125.03142 * 180.02562 * 9 7 6 11 11 C 1.34236 * 109.93437 * 359.97438 * 9 7 6 12 12 C 1.50701 * 126.50391 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46891 * 89.97547 * 12 11 9 14 14 H 1.07998 * 120.00109 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99627 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99955 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46972 * 90.00385 * 17 15 13 19 19 H 1.48502 * 109.46834 * 210.00226 * 17 15 13 20 20 H 1.48501 * 109.47338 * 330.00371 * 17 15 13 21 21 C 1.40666 * 119.32847 * 0.02562 * 6 5 4 22 22 C 1.36622 * 119.73777 * 270.25423 * 3 2 1 23 23 H 1.09000 * 109.47012 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47331 * 299.99916 * 1 2 3 26 26 H 1.08996 * 109.46890 * 239.99772 * 2 1 3 27 27 H 1.09000 * 109.47012 * 120.00052 * 2 1 3 28 28 H 1.08002 * 119.67056 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.11078 * 180.28286 * 5 4 3 30 30 H 1.09001 * 109.46859 * 89.97371 * 10 9 7 31 31 H 1.09000 * 109.47089 * 209.97368 * 10 9 7 32 32 H 1.09002 * 109.47409 * 329.97216 * 10 9 7 33 33 H 1.08998 * 109.46603 * 209.97628 * 12 11 9 34 34 H 1.08993 * 109.46728 * 329.97784 * 12 11 9 35 35 H 0.97002 * 119.99506 * 180.02562 * 16 15 13 36 36 H 1.08006 * 120.11930 * 0.02810 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0700 1.2055 5 6 2.7264 3.3666 1.2279 6 6 2.9638 4.0363 0.0317 7 7 3.4156 5.3007 -0.2733 8 1 3.6587 5.9776 0.3775 9 6 3.4695 5.4603 -1.6312 10 6 3.9172 6.7139 -2.3377 11 6 3.0658 4.3345 -2.2407 12 6 2.9796 4.1013 -3.7271 13 6 4.2889 3.5456 -4.2251 14 1 5.1020 3.3777 -3.5343 15 6 4.4484 3.2506 -5.5625 16 7 3.4582 3.4546 -6.4035 17 14 6.0716 2.5625 -6.1799 18 1 6.0384 1.0795 -6.1119 19 1 6.2871 2.9888 -7.5860 20 1 7.1797 3.0722 -5.3327 21 6 2.7240 3.3760 -1.1870 22 6 2.2533 2.0615 -1.1863 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0790 1.5516 2.1352 29 1 2.9062 3.8615 2.1709 30 1 4.9926 6.6696 -2.5100 31 1 3.3993 6.7971 -3.2932 32 1 3.6834 7.5818 -1.7211 33 1 2.1799 3.3912 -3.9376 34 1 2.7700 5.0446 -4.2313 35 1 3.5703 3.2466 -7.3443 36 1 2.0681 1.5517 -2.1203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:44 Heat of formation + Delta-G solvation = 27.470893 kcal Electronic energy + Delta-G solvation = -16902.455459 eV Core-core repulsion = 14350.704207 eV Total energy + Delta-G solvation = -2551.751252 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67924 -37.26171 -33.61670 -32.91277 -31.53388 -30.24607 -28.84547 -27.19691 -25.75301 -23.19410 -22.93623 -21.10165 -20.19787 -18.13529 -17.02325 -16.17451 -15.47830 -14.86862 -14.43115 -14.17003 -13.93504 -13.45993 -13.12658 -12.88951 -12.42736 -12.29637 -12.20068 -11.98753 -11.85020 -11.45553 -11.16324 -10.88328 -10.69746 -10.67721 -10.54710 -10.38932 -10.08715 -9.62489 -9.38924 -8.71923 -8.32696 -7.44674 -6.78401 -5.93219 -3.96777 1.71301 2.14009 3.35001 3.39992 3.42549 3.50911 3.69752 4.42929 4.54837 5.14901 5.15849 5.37270 5.40956 5.45680 5.55860 5.64648 5.71969 5.86033 5.96300 6.00276 6.05815 6.13683 6.15984 6.33749 6.41098 6.48144 6.54371 6.63880 6.81191 6.97184 7.23178 7.42847 7.52954 7.63961 7.78655 7.99922 8.02366 8.21193 8.48300 9.08457 9.66216 11.14881 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.007546 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.267805 B = 3709.723338 C = 4696.320624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.129 4.129 4 C -0.102 4.102 5 C -0.140 4.140 6 C 0.091 3.909 7 N -0.601 5.601 8 H 0.404 0.596 9 C 0.037 3.963 10 C -0.078 4.078 11 C -0.108 4.108 12 C 0.082 3.918 13 C -0.502 4.502 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.096 4.096 22 C -0.050 4.050 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 0.106 13.307 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.162 4.162 6 C -0.017 4.017 7 N -0.206 5.206 8 H 0.239 0.761 9 C -0.067 4.067 10 C -0.136 4.136 11 C -0.114 4.114 12 C 0.045 3.955 13 C -0.540 4.540 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.101 4.101 22 C -0.068 4.068 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.890 0.219 13.142 13.458 hybrid contribution 1.100 -0.060 -0.003 1.102 sum -1.790 0.159 13.139 13.261 Atomic orbital electron populations 1.21759 0.95490 1.00935 1.02099 1.20400 0.95599 0.93174 1.02134 1.19202 1.04643 0.96379 0.92853 1.20470 1.00892 0.93800 0.96996 1.19811 1.06675 0.95385 0.94282 1.18216 1.02135 0.86087 0.95268 1.41564 1.60435 1.12167 1.06399 0.76098 1.20021 1.06838 0.98359 0.81444 1.20291 1.01955 0.91332 0.99977 1.21006 1.02668 0.90668 0.97020 1.17704 0.97226 0.97254 0.83311 1.21112 0.98431 1.41792 0.92676 0.92786 1.24986 0.96498 0.95951 0.96928 1.69958 1.31322 1.48979 1.03402 0.86621 0.84280 0.79375 0.77925 1.20702 1.21275 1.19974 1.19264 1.04034 0.94630 0.92219 1.20231 0.96360 0.92698 0.97511 0.92457 0.93062 0.92955 0.91330 0.91860 0.86778 0.87247 0.91114 0.89528 0.93065 0.95698 0.95525 0.93032 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.08 -1.01 6.04 -27.88 -0.17 -1.18 16 3 C -0.13 -2.12 5.10 -104.99 -0.54 -2.66 16 4 C -0.10 -1.55 9.66 -39.54 -0.38 -1.93 16 5 C -0.14 -2.21 10.08 -39.43 -0.40 -2.61 16 6 C 0.09 1.68 7.28 -83.99 -0.61 1.06 16 7 N -0.60 -10.18 6.07 -6.95 -0.04 -10.22 16 8 H 0.40 5.25 8.96 -40.82 -0.37 4.88 16 9 C 0.04 0.73 7.08 -81.77 -0.58 0.15 16 10 C -0.08 -1.28 10.18 36.01 0.37 -0.92 16 11 C -0.11 -2.47 5.50 -102.71 -0.57 -3.03 16 12 C 0.08 2.17 5.26 -29.03 -0.15 2.02 16 13 C -0.50 -14.25 9.09 -34.44 -0.31 -14.56 16 14 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.10 -2.06 6.35 -105.14 -0.67 -2.72 16 22 C -0.05 -0.98 9.67 -39.65 -0.38 -1.36 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.72 7.06 -51.93 -0.37 0.35 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -31.23 305.15 -9.13 -40.36 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.28 Total: 1.91 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -4.12 Total: -27.58 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.69 Total: -36.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.23 -9.13 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.832 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds