Wall clock time and date at job start Mon Mar 30 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47066 * 2 1 4 4 C 1.38830 * 119.73446 * 89.99975 * 3 2 1 5 5 C 1.37747 * 120.66518 * 179.71973 * 4 3 2 6 6 C 1.39131 * 119.78074 * 0.25422 * 5 4 3 7 7 N 1.37689 * 133.51077 * 179.97438 * 6 5 4 8 8 H 0.97000 * 125.06317 * 359.97438 * 7 6 5 9 9 C 1.36829 * 109.87137 * 180.02562 * 7 6 5 10 10 C 1.50703 * 125.03142 * 180.02562 * 9 7 6 11 11 C 1.34236 * 109.93437 * 359.97438 * 9 7 6 12 12 C 1.50701 * 126.50391 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46891 * 89.97547 * 12 11 9 14 14 H 1.07998 * 120.00109 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99627 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99955 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46972 * 90.00385 * 17 15 13 19 19 H 1.48502 * 109.46834 * 210.00226 * 17 15 13 20 20 H 1.48501 * 109.47338 * 330.00371 * 17 15 13 21 21 C 1.40666 * 119.32847 * 0.02562 * 6 5 4 22 22 C 1.36622 * 119.73777 * 270.25423 * 3 2 1 23 23 H 1.09000 * 109.47012 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47331 * 299.99916 * 1 2 3 26 26 H 1.08996 * 109.46890 * 239.99772 * 2 1 3 27 27 H 1.09000 * 109.47012 * 120.00052 * 2 1 3 28 28 H 1.08002 * 119.67056 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.11078 * 180.28286 * 5 4 3 30 30 H 1.09001 * 109.46859 * 89.97371 * 10 9 7 31 31 H 1.09000 * 109.47089 * 209.97368 * 10 9 7 32 32 H 1.09002 * 109.47409 * 329.97216 * 10 9 7 33 33 H 1.08998 * 109.46603 * 209.97628 * 12 11 9 34 34 H 1.08993 * 109.46728 * 329.97784 * 12 11 9 35 35 H 0.97002 * 119.99506 * 180.02562 * 16 15 13 36 36 H 1.08006 * 120.11930 * 0.02810 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0700 1.2055 5 6 2.7264 3.3666 1.2279 6 6 2.9638 4.0363 0.0317 7 7 3.4156 5.3007 -0.2733 8 1 3.6587 5.9776 0.3775 9 6 3.4695 5.4603 -1.6312 10 6 3.9172 6.7139 -2.3377 11 6 3.0658 4.3345 -2.2407 12 6 2.9796 4.1013 -3.7271 13 6 4.2889 3.5456 -4.2251 14 1 5.1020 3.3777 -3.5343 15 6 4.4484 3.2506 -5.5625 16 7 3.4582 3.4546 -6.4035 17 14 6.0716 2.5625 -6.1799 18 1 6.0384 1.0795 -6.1119 19 1 6.2871 2.9888 -7.5860 20 1 7.1797 3.0722 -5.3327 21 6 2.7240 3.3760 -1.1870 22 6 2.2533 2.0615 -1.1863 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0790 1.5516 2.1352 29 1 2.9062 3.8615 2.1709 30 1 4.9926 6.6696 -2.5100 31 1 3.3993 6.7971 -3.2932 32 1 3.6834 7.5818 -1.7211 33 1 2.1799 3.3912 -3.9376 34 1 2.7700 5.0446 -4.2313 35 1 3.5703 3.2466 -7.3443 36 1 2.0681 1.5517 -2.1203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:44 Heat of formation + Delta-G solvation = 10.256898 kcal Electronic energy + Delta-G solvation = -16903.201914 eV Core-core repulsion = 14350.704207 eV Total energy + Delta-G solvation = -2552.497707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.11533 -38.58107 -35.56199 -34.24417 -33.25572 -31.59572 -30.43638 -28.76911 -27.30636 -24.96900 -24.36076 -22.47174 -21.50009 -19.73780 -18.49420 -18.35836 -16.83073 -16.48554 -16.09457 -15.63203 -15.14799 -14.88211 -14.31677 -14.27167 -14.13268 -13.90704 -13.75247 -13.50837 -13.14416 -13.02541 -12.84416 -12.59415 -12.47294 -11.99459 -11.82978 -11.73671 -11.69660 -11.56887 -11.32279 -10.56031 -10.26351 -8.81804 -8.41265 -8.04350 -6.26971 0.32266 0.78306 1.37686 1.39378 1.50317 1.91402 2.33968 2.43645 3.05676 3.14242 3.86618 4.00822 4.07743 4.31304 4.33997 4.50475 4.56746 4.59695 4.64217 4.76489 4.78910 4.80594 5.09390 5.11580 5.14619 5.18441 5.24510 5.30795 5.40111 5.43961 5.52607 5.73324 5.79234 5.91679 6.00901 6.12683 6.30518 6.41293 6.83903 6.92905 7.40586 8.93906 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.007546 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.267805 B = 3709.723338 C = 4696.320624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.117 4.117 4 C -0.099 4.099 5 C -0.128 4.128 6 C 0.079 3.921 7 N -0.583 5.583 8 H 0.426 0.574 9 C 0.058 3.942 10 C -0.077 4.077 11 C -0.171 4.171 12 C 0.099 3.901 13 C -0.516 4.516 14 H 0.044 0.956 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.133 4.133 22 C -0.091 4.091 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.094 0.906 33 H -0.015 1.015 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 0.042 16.568 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.148 4.148 6 C -0.028 4.028 7 N -0.189 5.189 8 H 0.266 0.734 9 C -0.049 4.049 10 C -0.134 4.134 11 C -0.178 4.178 12 C 0.062 3.938 13 C -0.554 4.554 14 H 0.063 0.937 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.191 1.191 21 C -0.137 4.137 22 C -0.110 4.110 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.176 0.824 29 H 0.169 0.831 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.004 0.996 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.897 0.167 16.442 16.552 hybrid contribution 0.724 -0.065 -0.938 1.187 sum -1.173 0.101 15.504 15.549 Atomic orbital electron populations 1.21726 0.94329 1.02245 1.01602 1.20497 0.96544 0.91363 1.03027 1.19590 1.02450 0.97586 0.92231 1.20976 0.99311 0.93749 0.97782 1.20319 1.04438 0.95393 0.94658 1.18490 1.02684 0.86428 0.95216 1.41413 1.59458 1.12361 1.05695 0.73391 1.20260 1.04014 0.97940 0.82669 1.20354 1.01758 0.91662 0.99648 1.20762 1.07791 0.93696 0.95530 1.17295 0.95159 0.94842 0.86501 1.21343 0.98945 1.42130 0.92986 0.93719 1.25866 1.00294 0.96075 0.97013 1.70084 1.33477 1.49803 1.03805 0.85534 0.79721 0.78648 0.77688 1.20152 1.20125 1.19110 1.19495 1.05559 0.95450 0.93240 1.20220 0.99695 0.93095 0.97967 0.94627 0.90883 0.91773 0.92468 0.88908 0.82445 0.83058 0.90702 0.91439 0.88688 0.99643 0.97522 0.92704 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.46 16 2 C -0.08 -1.94 6.04 29.85 0.18 -1.76 16 3 C -0.12 -3.75 5.10 -20.10 -0.10 -3.85 16 4 C -0.10 -2.63 9.66 22.30 0.22 -2.42 16 5 C -0.13 -3.53 10.08 22.37 0.23 -3.30 16 6 C 0.08 2.83 7.28 39.03 0.28 3.11 16 7 N -0.58 -18.68 6.07 -175.91 -1.07 -19.75 16 8 H 0.43 9.61 8.96 -92.71 -0.83 8.78 16 9 C 0.06 2.27 7.08 40.87 0.29 2.56 16 10 C -0.08 -2.49 10.18 71.24 0.72 -1.76 16 11 C -0.17 -8.33 5.50 -18.63 -0.10 -8.43 16 12 C 0.10 5.70 5.26 29.10 0.15 5.85 16 13 C -0.52 -30.99 9.09 25.60 0.23 -30.76 16 14 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 17 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C -0.13 -5.91 6.35 -20.20 -0.13 -6.04 16 22 C -0.09 -3.81 9.67 22.23 0.22 -3.59 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 27 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.45 7.04 -2.39 -0.02 2.43 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H 0.01 0.39 7.06 -2.39 -0.02 0.37 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.09 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -72.85 305.15 4.84 -68.01 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.24 Total: 13.40 kcal Atomic # 6 Polarization: -55.45 SS G_CDS: 3.36 Total: -52.09 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -0.78 Total: -77.22 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.85 4.84 -68.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.265 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds