Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47141 * 2 1 4 4 C 1.38665 * 119.87378 * 270.02547 * 3 2 1 5 5 C 1.37869 * 120.62155 * 179.66200 * 4 3 2 6 6 C 1.39120 * 119.96903 * 0.52059 * 5 4 3 7 7 C 1.40350 * 119.30137 * 359.61571 * 6 5 4 8 8 C 1.37879 * 119.87023 * 90.00564 * 3 2 1 9 9 C 1.47670 * 106.06400 * 180.16480 * 7 6 5 10 10 C 1.40901 * 126.93121 * 179.89668 * 9 7 6 11 11 H 1.08005 * 119.99615 * 146.34166 * 10 9 7 12 12 C 1.39737 * 119.99940 * 326.61754 * 10 9 7 13 13 N 1.31045 * 119.99888 * 340.99031 * 12 10 9 14 14 Si 1.86796 * 119.99884 * 160.98755 * 12 10 9 15 15 H 1.48493 * 109.47181 * 59.99847 * 14 12 10 16 16 H 1.48498 * 109.47230 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47120 * 300.00219 * 14 12 10 18 18 C 1.38897 * 106.13877 * 359.63475 * 9 7 6 19 19 C 1.50701 * 125.35970 * 180.20551 * 18 9 7 20 20 N 1.35634 * 109.28239 * 0.22999 * 18 9 7 21 21 C 1.46500 * 124.68989 * 180.02562 * 20 18 9 22 22 H 1.09007 * 109.47563 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47278 * 299.99454 * 1 2 3 24 24 H 1.08997 * 109.47656 * 59.99729 * 1 2 3 25 25 H 1.09001 * 109.46997 * 240.00082 * 2 1 3 26 26 H 1.09001 * 109.47329 * 120.00653 * 2 1 3 27 27 H 1.07998 * 119.69038 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.01438 * 179.89429 * 5 4 3 29 29 H 1.08002 * 120.15778 * 0.02562 * 8 3 2 30 30 H 0.97002 * 120.00216 * 175.10990 * 13 12 10 31 31 H 1.08996 * 109.47387 * 95.15319 * 19 18 9 32 32 H 1.09001 * 109.47524 * 215.15304 * 19 18 9 33 33 H 1.09005 * 109.46937 * 335.15108 * 19 18 9 34 34 H 1.08996 * 109.47767 * 89.97320 * 21 20 18 35 35 H 1.09008 * 109.47103 * 209.97126 * 21 20 18 36 36 H 1.08997 * 109.47229 * 329.96597 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0722 -1.2024 5 6 2.7149 3.3743 -1.2204 6 6 2.9559 4.0428 -0.0244 7 6 2.7252 3.3805 1.1913 8 6 2.2613 2.0682 1.1956 9 6 3.0670 4.3468 2.2543 10 6 2.9933 4.1362 3.6456 11 1 3.7099 4.6077 4.3018 12 6 1.9966 3.3126 4.1757 13 7 0.9281 3.0387 3.4683 14 14 2.1876 2.6021 5.8926 15 1 2.2996 3.7086 6.8766 16 1 1.0028 1.7680 6.2178 17 1 3.4125 1.7643 5.9483 18 6 3.4814 5.5033 1.6062 19 6 3.9358 6.7691 2.2862 20 7 3.4124 5.3142 0.2648 21 6 3.7727 6.3191 -0.7385 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0789 1.5567 -2.1336 28 1 2.8922 3.8716 -2.1626 29 1 2.0819 1.5594 2.1312 30 1 0.2701 2.4113 3.8065 31 1 5.0227 6.7679 2.3673 32 1 3.6161 7.6311 1.7007 33 1 3.4971 6.8238 3.2826 34 1 4.8292 6.2211 -0.9878 35 1 3.1722 6.1683 -1.6357 36 1 3.5846 7.3155 -0.3386 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = 36.827234 kcal Electronic energy + Delta-G solvation = -17453.569926 eV Core-core repulsion = 14902.224396 eV Total energy + Delta-G solvation = -2551.345530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82508 -36.63174 -33.76363 -32.62623 -31.18755 -29.58836 -28.52595 -26.87503 -25.82399 -23.48867 -22.40326 -20.62837 -19.48510 -18.55750 -16.64146 -15.46505 -14.87463 -14.58654 -14.38371 -14.28571 -13.44534 -13.15851 -12.75725 -12.48326 -12.37310 -12.22962 -11.92626 -11.77610 -11.62007 -11.25025 -11.21608 -11.11698 -10.76643 -10.64029 -10.42407 -10.11240 -9.95926 -9.66692 -9.34823 -8.82283 -8.11919 -6.74646 -6.61545 -6.16570 -3.95138 2.38973 2.75661 3.14429 3.21484 3.25387 4.02472 4.08525 4.20533 4.95872 5.45674 5.51127 5.58759 5.62413 5.77975 5.84082 5.91734 6.02867 6.05791 6.17142 6.19507 6.32468 6.34878 6.48171 6.53096 6.61192 6.77330 6.83473 6.94212 7.02445 7.18985 7.38522 7.41448 7.60149 7.83308 8.01743 8.26102 8.44851 8.69561 8.77865 9.15775 9.19795 10.54302 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.012736 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.168081 B = 2198.011523 C = 3936.733969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.168 4.168 4 C -0.103 4.103 5 C -0.164 4.164 6 C 0.096 3.904 7 C -0.096 4.096 8 C -0.007 4.007 9 C 0.076 3.924 10 C -0.458 4.458 11 H 0.072 0.928 12 C 0.082 3.918 13 N -0.808 5.808 14 Si 0.891 3.109 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.122 4.122 19 C -0.045 4.045 20 N -0.480 5.480 21 C 0.092 3.908 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.273 0.727 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -0.619 -5.523 5.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.170 4.170 4 C -0.122 4.122 5 C -0.186 4.186 6 C -0.012 4.012 7 C -0.102 4.102 8 C -0.026 4.026 9 C 0.071 3.929 10 C -0.491 4.491 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.436 5.436 14 Si 0.716 3.284 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.223 4.223 19 C -0.102 4.102 20 N -0.167 5.167 21 C -0.052 4.052 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.346 -0.375 -5.631 5.801 hybrid contribution -0.026 -0.261 0.607 0.661 sum 1.320 -0.636 -5.024 5.233 Atomic orbital electron populations 1.21753 0.95997 1.00100 1.02256 1.20245 0.95271 0.93833 1.00920 1.19341 1.08148 0.96281 0.93222 1.20243 1.01743 0.93811 0.96389 1.19642 1.09483 0.95418 0.94027 1.18209 1.02127 0.85697 0.95212 1.19293 1.04633 0.93990 0.92291 1.20404 0.93054 0.92916 0.96194 1.17798 0.95101 0.88177 0.91863 1.18458 1.11993 1.27931 0.90693 0.90955 1.25596 0.93639 0.95485 0.98561 1.69987 1.06524 1.28130 1.38957 0.86663 0.78357 0.79697 0.83654 1.19420 1.20733 1.19302 1.20277 1.23314 0.97834 0.80865 1.19792 0.98591 0.92203 0.99649 1.42786 1.58724 1.10122 1.05028 1.21536 0.99594 0.92159 0.91868 0.93802 0.92263 0.93180 0.92680 0.92305 0.87983 0.88577 0.86698 0.91603 0.94407 0.94527 0.91167 0.93396 0.91873 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.15 0.37 -1.93 16 2 C -0.07 -1.12 6.06 -27.88 -0.17 -1.29 16 3 C -0.17 -3.52 5.13 -104.59 -0.54 -4.06 16 4 C -0.10 -2.04 9.67 -39.56 -0.38 -2.43 16 5 C -0.16 -3.43 9.88 -39.39 -0.39 -3.82 16 6 C 0.10 2.29 6.77 -83.90 -0.57 1.72 16 7 C -0.10 -2.51 5.78 -104.90 -0.61 -3.12 16 8 C -0.01 -0.18 8.46 -39.36 -0.33 -0.51 16 9 C 0.08 2.07 5.68 -104.79 -0.60 1.48 16 10 C -0.46 -12.38 8.76 -38.01 -0.33 -12.72 16 11 H 0.07 1.89 7.91 -52.48 -0.42 1.47 16 12 C 0.08 2.11 4.87 -17.33 -0.08 2.03 16 13 N -0.81 -21.56 10.60 55.54 0.59 -20.97 16 14 Si 0.89 19.43 29.60 -169.99 -5.03 14.39 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C -0.12 -2.95 6.96 -80.67 -0.56 -3.51 16 19 C -0.04 -0.90 9.82 36.01 0.35 -0.54 16 20 N -0.48 -10.79 3.15 -116.18 -0.37 -11.15 16 21 C 0.09 1.53 10.75 59.85 0.64 2.18 16 22 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.74 7.96 -52.49 -0.42 1.32 16 29 H 0.12 2.90 6.53 -52.49 -0.34 2.56 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.64 7.06 -51.93 -0.37 0.27 16 33 H 0.07 1.44 7.78 -51.93 -0.40 1.03 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.95 7.95 -51.92 -0.41 0.54 16 36 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -29.17 298.51 -8.73 -37.91 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.23 Total: 1.84 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.19 Total: -26.52 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.22 Total: -32.12 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.17 -8.73 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.734 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds