Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47141 * 2 1 4 4 C 1.38665 * 119.87378 * 270.02547 * 3 2 1 5 5 C 1.37869 * 120.62155 * 179.66200 * 4 3 2 6 6 C 1.39120 * 119.96903 * 0.52059 * 5 4 3 7 7 C 1.40350 * 119.30137 * 359.61571 * 6 5 4 8 8 C 1.37879 * 119.87023 * 90.00564 * 3 2 1 9 9 C 1.47670 * 106.06400 * 180.16480 * 7 6 5 10 10 C 1.40901 * 126.93121 * 179.89668 * 9 7 6 11 11 H 1.08005 * 119.99615 * 146.34166 * 10 9 7 12 12 C 1.39737 * 119.99940 * 326.61754 * 10 9 7 13 13 N 1.31045 * 119.99888 * 340.99031 * 12 10 9 14 14 Si 1.86796 * 119.99884 * 160.98755 * 12 10 9 15 15 H 1.48493 * 109.47181 * 59.99847 * 14 12 10 16 16 H 1.48498 * 109.47230 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47120 * 300.00219 * 14 12 10 18 18 C 1.38897 * 106.13877 * 359.63475 * 9 7 6 19 19 C 1.50701 * 125.35970 * 180.20551 * 18 9 7 20 20 N 1.35634 * 109.28239 * 0.22999 * 18 9 7 21 21 C 1.46500 * 124.68989 * 180.02562 * 20 18 9 22 22 H 1.09007 * 109.47563 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47278 * 299.99454 * 1 2 3 24 24 H 1.08997 * 109.47656 * 59.99729 * 1 2 3 25 25 H 1.09001 * 109.46997 * 240.00082 * 2 1 3 26 26 H 1.09001 * 109.47329 * 120.00653 * 2 1 3 27 27 H 1.07998 * 119.69038 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.01438 * 179.89429 * 5 4 3 29 29 H 1.08002 * 120.15778 * 0.02562 * 8 3 2 30 30 H 0.97002 * 120.00216 * 175.10990 * 13 12 10 31 31 H 1.08996 * 109.47387 * 95.15319 * 19 18 9 32 32 H 1.09001 * 109.47524 * 215.15304 * 19 18 9 33 33 H 1.09005 * 109.46937 * 335.15108 * 19 18 9 34 34 H 1.08996 * 109.47767 * 89.97320 * 21 20 18 35 35 H 1.09008 * 109.47103 * 209.97126 * 21 20 18 36 36 H 1.08997 * 109.47229 * 329.96597 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0722 -1.2024 5 6 2.7149 3.3743 -1.2204 6 6 2.9559 4.0428 -0.0244 7 6 2.7252 3.3805 1.1913 8 6 2.2613 2.0682 1.1956 9 6 3.0670 4.3468 2.2543 10 6 2.9933 4.1362 3.6456 11 1 3.7099 4.6077 4.3018 12 6 1.9966 3.3126 4.1757 13 7 0.9281 3.0387 3.4683 14 14 2.1876 2.6021 5.8926 15 1 2.2996 3.7086 6.8766 16 1 1.0028 1.7680 6.2178 17 1 3.4125 1.7643 5.9483 18 6 3.4814 5.5033 1.6062 19 6 3.9358 6.7691 2.2862 20 7 3.4124 5.3142 0.2648 21 6 3.7727 6.3191 -0.7385 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0789 1.5567 -2.1336 28 1 2.8922 3.8716 -2.1626 29 1 2.0819 1.5594 2.1312 30 1 0.2701 2.4113 3.8065 31 1 5.0227 6.7679 2.3673 32 1 3.6161 7.6311 1.7007 33 1 3.4971 6.8238 3.2826 34 1 4.8292 6.2211 -0.9878 35 1 3.1722 6.1683 -1.6357 36 1 3.5846 7.3155 -0.3386 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = 22.583727 kcal Electronic energy + Delta-G solvation = -17454.187571 eV Core-core repulsion = 14902.224396 eV Total energy + Delta-G solvation = -2551.963175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54166 -38.25267 -35.61183 -34.10792 -32.93231 -31.23109 -30.11371 -28.65231 -27.38818 -25.18927 -23.90741 -22.33025 -21.16568 -20.27568 -18.45353 -17.24993 -16.54624 -16.30738 -15.94728 -15.84093 -14.90717 -14.82520 -14.28066 -14.15853 -13.92672 -13.73115 -13.51026 -13.33632 -13.23244 -12.85654 -12.79520 -12.71691 -12.42213 -12.39515 -11.91155 -11.76133 -11.55106 -11.25634 -11.10870 -10.70960 -9.89942 -8.55545 -8.41345 -7.99184 -5.89875 0.65034 1.06550 1.38676 1.41714 1.50425 2.20869 2.33542 2.51970 3.17156 3.59769 4.12976 4.18629 4.21075 4.37246 4.46278 4.51692 4.54820 4.63724 4.67775 4.72543 4.87465 4.93082 4.96481 5.03394 5.12128 5.23232 5.25996 5.33866 5.44935 5.49993 5.53085 5.67033 5.87476 6.10466 6.28083 6.48929 6.52631 6.90478 7.00801 7.25588 7.31640 8.65613 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.012736 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.168081 B = 2198.011523 C = 3936.733969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.162 4.162 4 C -0.103 4.103 5 C -0.158 4.158 6 C 0.069 3.931 7 C -0.135 4.135 8 C -0.039 4.039 9 C 0.014 3.986 10 C -0.489 4.489 11 H 0.065 0.935 12 C 0.041 3.959 13 N -0.841 5.841 14 Si 0.956 3.044 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.268 1.268 18 C -0.114 4.114 19 C -0.041 4.041 20 N -0.485 5.485 21 C 0.084 3.916 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.274 0.726 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 -0.673 -7.723 7.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.164 4.164 4 C -0.122 4.122 5 C -0.179 4.179 6 C -0.039 4.039 7 C -0.142 4.142 8 C -0.058 4.058 9 C 0.008 3.992 10 C -0.523 4.523 11 H 0.083 0.917 12 C -0.170 4.170 13 N -0.470 5.470 14 Si 0.779 3.221 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.193 1.193 18 C -0.217 4.217 19 C -0.099 4.099 20 N -0.171 5.171 21 C -0.057 4.057 22 H 0.092 0.908 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.655 -0.410 -7.859 8.042 hybrid contribution -0.070 -0.181 1.120 1.137 sum 1.586 -0.591 -6.738 6.948 Atomic orbital electron populations 1.21692 0.94991 1.01741 1.01107 1.20330 0.96034 0.91637 1.02234 1.19801 1.06175 0.97921 0.92528 1.20725 1.00350 0.93658 0.97430 1.20085 1.07840 0.95734 0.94274 1.18592 1.03200 0.86551 0.95551 1.19623 1.06150 0.94991 0.93393 1.20393 0.95568 0.93128 0.96713 1.18276 0.98176 0.90140 0.92578 1.18626 1.12589 1.29738 0.91306 0.91732 1.26274 0.93013 0.95623 1.02052 1.70066 1.07248 1.29019 1.40710 0.85661 0.78211 0.78984 0.79241 1.18719 1.20013 1.19348 1.20916 1.20360 0.98287 0.82160 1.19841 0.99581 0.91410 0.99055 1.43094 1.57994 1.10712 1.05297 1.21886 1.01115 0.91442 0.91279 0.90778 0.95159 0.92543 0.89517 0.92786 0.83780 0.85095 0.89228 0.91656 0.92546 0.91576 0.92395 0.91460 0.89924 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.89 71.98 0.71 -3.47 16 2 C -0.07 -2.12 6.06 29.85 0.18 -1.94 16 3 C -0.16 -6.71 5.13 -19.85 -0.10 -6.82 16 4 C -0.10 -3.80 9.67 22.28 0.22 -3.59 16 5 C -0.16 -6.22 9.88 22.39 0.22 -6.00 16 6 C 0.07 3.29 6.77 38.87 0.26 3.55 16 7 C -0.14 -7.36 5.78 -20.04 -0.12 -7.48 16 8 C -0.04 -2.00 8.46 22.41 0.19 -1.81 16 9 C 0.01 0.81 5.68 -19.98 -0.11 0.70 16 10 C -0.49 -27.99 8.76 23.28 0.20 -27.78 16 11 H 0.06 3.59 7.91 -2.91 -0.02 3.56 16 12 C 0.04 2.25 4.87 85.17 0.41 2.66 16 13 N -0.84 -47.50 10.60 21.80 0.23 -47.27 16 14 Si 0.96 41.80 29.60 68.60 2.03 43.83 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 C -0.11 -5.57 6.96 42.13 0.29 -5.28 16 19 C -0.04 -1.63 9.82 71.24 0.70 -0.93 16 20 N -0.49 -21.29 3.15 -521.48 -1.64 -22.93 16 21 C 0.08 2.54 10.75 127.77 1.37 3.92 16 22 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 26 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 27 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 28 H 0.13 4.16 7.96 -2.91 -0.02 4.13 16 29 H 0.09 4.87 6.53 -2.91 -0.02 4.85 16 30 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.17 7.06 -2.39 -0.02 2.15 16 33 H 0.06 2.40 7.78 -2.38 -0.02 2.38 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.18 7.95 -2.38 -0.02 2.16 16 36 H 0.08 2.27 6.94 -2.39 -0.02 2.26 16 Total: -1.00 -67.39 298.51 6.11 -61.28 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.06 Total: 19.36 kcal Atomic # 6 Polarization: -58.71 SS G_CDS: 4.44 Total: -54.28 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.41 Total: -70.20 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.39 6.11 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.865 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds