Wall clock time and date at job start Mon Mar 30 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35640 * 125.35502 * 2 1 4 4 H 0.97002 * 124.69456 * 0.03982 * 3 2 1 5 5 C 1.38147 * 110.61840 * 180.02562 * 3 2 1 6 6 C 1.39124 * 132.80945 * 179.97438 * 5 3 2 7 7 C 1.37870 * 119.96934 * 180.02562 * 6 5 3 8 8 C 1.38671 * 120.62377 * 0.25827 * 7 6 5 9 9 C 1.50704 * 119.87217 * 179.74634 * 8 7 6 10 10 C 1.53002 * 109.46948 * 299.99805 * 9 8 7 11 11 C 1.53000 * 109.47086 * 59.99649 * 9 8 7 12 12 C 1.37871 * 120.25198 * 359.48187 * 8 7 6 13 13 C 1.39187 * 119.69444 * 0.51282 * 12 8 7 14 14 C 1.38890 * 125.36014 * 180.02562 * 2 1 3 15 15 C 1.40898 * 126.93007 * 359.97438 * 14 2 1 16 16 H 1.08006 * 119.99718 * 30.79756 * 15 14 2 17 17 C 1.39739 * 120.00040 * 210.78927 * 15 14 2 18 18 N 1.31052 * 119.99821 * 19.54104 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 199.53933 * 17 15 14 20 20 H 1.48509 * 109.47017 * 90.00104 * 19 17 15 21 21 H 1.48492 * 109.47166 * 210.00044 * 19 17 15 22 22 H 1.48498 * 109.46934 * 330.00426 * 19 17 15 23 23 H 1.08999 * 109.47324 * 95.04719 * 1 2 3 24 24 H 1.09001 * 109.46877 * 215.04458 * 1 2 3 25 25 H 1.09001 * 109.46905 * 335.04154 * 1 2 3 26 26 H 1.07996 * 120.01303 * 359.97438 * 6 5 3 27 27 H 1.07993 * 119.68278 * 179.97438 * 7 6 5 28 28 H 1.08996 * 109.47105 * 179.97438 * 9 8 7 29 29 H 1.08995 * 109.47418 * 299.99865 * 10 9 8 30 30 H 1.09003 * 109.47214 * 60.00450 * 10 9 8 31 31 H 1.09001 * 109.47029 * 179.97438 * 10 9 8 32 32 H 1.09003 * 109.47238 * 60.00369 * 11 9 8 33 33 H 1.09001 * 109.47322 * 180.02562 * 11 9 8 34 34 H 1.08995 * 109.47369 * 300.00179 * 11 9 8 35 35 H 1.08003 * 120.15712 * 180.25362 * 12 8 7 36 36 H 0.97003 * 119.99384 * 174.43655 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.1063 0.0000 4 1 1.9609 2.0181 0.0006 5 6 3.6279 0.7548 -0.0006 6 6 4.8019 1.5014 -0.0013 7 6 6.0239 0.8632 -0.0023 8 6 6.0976 -0.5216 -0.0080 9 6 7.4425 -1.2016 -0.0148 10 6 8.2192 -0.7832 -1.2648 11 6 8.2269 -0.7930 1.2336 12 6 4.9453 -1.2785 -0.0020 13 6 3.7052 -0.6465 -0.0009 14 6 2.3108 -1.1327 -0.0005 15 6 1.8822 -2.4749 -0.0006 16 1 0.9524 -2.7448 -0.4792 17 6 2.6602 -3.4569 0.6184 18 7 3.5595 -3.1156 1.5085 19 14 2.4183 -5.2558 0.1772 20 1 3.3123 -5.6127 -0.9537 21 1 2.7453 -6.1021 1.3527 22 1 1.0051 -5.4827 -0.2184 23 1 -0.3634 -0.0904 -1.0237 24 1 -0.3633 -0.8414 0.5901 25 1 -0.3633 0.9317 0.4336 26 1 4.7559 2.5804 -0.0019 27 1 6.9323 1.4472 -0.0032 28 1 7.3030 -2.2826 -0.0182 29 1 7.6605 -1.0743 -2.1542 30 1 8.3588 0.2979 -1.2610 31 1 9.1921 -1.2747 -1.2695 32 1 7.6736 -1.0911 2.1242 33 1 9.1998 -1.2845 1.2285 34 1 8.3664 0.2880 1.2375 35 1 5.0046 -2.3569 -0.0023 36 1 4.0429 -3.8005 1.9966 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:18 Heat of formation + Delta-G solvation = 26.829267 kcal Electronic energy + Delta-G solvation = -17357.586598 eV Core-core repulsion = 14805.807523 eV Total energy + Delta-G solvation = -2551.779075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69667 -36.97759 -33.65027 -33.48245 -30.39579 -29.50726 -28.18410 -26.68358 -26.12930 -24.26087 -21.87818 -20.78247 -18.99755 -18.82720 -16.65505 -15.85850 -14.88194 -14.81446 -14.40786 -13.53906 -13.40332 -12.98899 -12.81606 -12.64632 -12.40360 -12.14990 -11.91730 -11.72762 -11.48116 -11.42787 -11.14452 -10.81237 -10.78243 -10.68590 -10.30350 -10.07843 -9.89119 -9.81619 -9.30823 -8.90570 -8.14350 -6.75566 -6.58381 -6.25246 -3.94355 2.41561 2.79988 3.11427 3.20712 3.23387 4.04087 4.15238 4.52486 4.98710 5.40661 5.44707 5.47273 5.78593 5.88917 6.00393 6.07041 6.09734 6.21169 6.22533 6.29970 6.35578 6.41903 6.55441 6.58874 6.70591 6.74513 6.85665 6.96393 7.06583 7.22029 7.38088 7.41658 7.60991 7.86628 8.03048 8.27905 8.42472 8.74181 8.89639 9.18356 9.20558 10.51580 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.010386 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.598876 B = 2695.264947 C = 4030.942463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.130 4.130 3 N -0.591 5.591 4 H 0.389 0.611 5 C 0.094 3.906 6 C -0.169 4.169 7 C -0.098 4.098 8 C -0.163 4.163 9 C -0.042 4.042 10 C -0.139 4.139 11 C -0.138 4.138 12 C -0.005 4.005 13 C -0.098 4.098 14 C 0.074 3.926 15 C -0.459 4.459 16 H 0.074 0.926 17 C 0.080 3.920 18 N -0.807 5.807 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 3.732 -1.933 6.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.233 4.233 3 N -0.194 5.194 4 H 0.223 0.777 5 C -0.016 4.016 6 C -0.191 4.191 7 C -0.117 4.117 8 C -0.165 4.165 9 C -0.060 4.060 10 C -0.196 4.196 11 C -0.196 4.196 12 C -0.023 4.023 13 C -0.105 4.105 14 C 0.068 3.932 15 C -0.491 4.491 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.435 5.435 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.190 1.190 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.469 3.685 -1.819 6.071 hybrid contribution -0.234 -0.335 -0.015 0.409 sum 4.234 3.350 -1.834 5.702 Atomic orbital electron populations 1.19760 0.90147 1.00309 0.99904 1.20209 0.91679 0.85516 1.25884 1.40877 1.03570 1.06796 1.68195 0.77741 1.18234 0.84156 0.94842 1.04353 1.19651 0.90514 0.97110 1.11781 1.20178 0.95249 0.93765 1.02480 1.19262 0.93720 0.93165 1.10382 1.19846 0.92612 0.99255 0.94306 1.21835 0.98840 1.00927 0.98043 1.21816 0.98727 1.00823 0.98201 1.20536 0.89764 0.99177 0.92829 1.19251 0.94359 0.90710 1.06150 1.17807 0.87727 0.91567 0.96118 1.18534 1.06381 0.90363 1.33840 0.90775 1.25672 0.93685 1.00364 0.93764 1.69947 1.20799 1.35117 1.17660 0.86518 0.79567 0.82921 0.78779 1.19646 1.20735 1.19036 0.94150 0.91573 0.94612 0.88578 0.88043 0.91473 0.92886 0.92999 0.93605 0.92617 0.93678 0.93081 0.86419 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 10.17 36.01 0.37 -0.49 16 2 C -0.13 -3.11 7.23 -80.67 -0.58 -3.69 16 3 N -0.59 -12.95 5.99 -6.14 -0.04 -12.99 16 4 H 0.39 7.03 8.96 -40.82 -0.37 6.67 16 5 C 0.09 2.21 7.23 -83.89 -0.61 1.60 16 6 C -0.17 -3.48 10.07 -39.39 -0.40 -3.88 16 7 C -0.10 -1.91 8.68 -39.56 -0.34 -2.26 16 8 C -0.16 -3.39 4.78 -104.59 -0.50 -3.89 16 9 C -0.04 -0.72 3.09 -91.77 -0.28 -1.00 16 10 C -0.14 -2.04 9.01 37.16 0.33 -1.71 16 11 C -0.14 -2.11 9.01 37.16 0.33 -1.77 16 12 C 0.00 -0.11 8.37 -39.36 -0.33 -0.44 16 13 C -0.10 -2.56 5.78 -104.90 -0.61 -3.16 16 14 C 0.07 1.99 5.72 -104.80 -0.60 1.39 16 15 C -0.46 -12.36 8.93 -38.02 -0.34 -12.70 16 16 H 0.07 1.94 7.92 -52.48 -0.42 1.52 16 17 C 0.08 2.06 4.88 -17.32 -0.08 1.98 16 18 N -0.81 -21.38 10.29 55.54 0.57 -20.81 16 19 Si 0.90 19.37 29.61 -169.99 -5.03 14.34 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.10 1.70 7.07 -52.49 -0.37 1.33 16 28 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.72 7.37 -51.93 -0.38 0.34 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.74 7.37 -51.93 -0.38 0.35 16 35 H 0.12 2.99 6.18 -52.48 -0.32 2.67 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -28.53 296.16 -8.83 -37.36 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.16 Total: 7.66 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -3.64 Total: -30.02 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.53 Total: -33.80 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.53 -8.83 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.192 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds