Wall clock time and date at job start Mon Mar 30 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35640 * 125.35502 * 2 1 4 4 H 0.97002 * 124.69456 * 0.03982 * 3 2 1 5 5 C 1.38147 * 110.61840 * 180.02562 * 3 2 1 6 6 C 1.39124 * 132.80945 * 179.97438 * 5 3 2 7 7 C 1.37870 * 119.96934 * 180.02562 * 6 5 3 8 8 C 1.38671 * 120.62377 * 0.25827 * 7 6 5 9 9 C 1.50704 * 119.87217 * 179.74634 * 8 7 6 10 10 C 1.53002 * 109.46948 * 299.99805 * 9 8 7 11 11 C 1.53000 * 109.47086 * 59.99649 * 9 8 7 12 12 C 1.37871 * 120.25198 * 359.48187 * 8 7 6 13 13 C 1.39187 * 119.69444 * 0.51282 * 12 8 7 14 14 C 1.38890 * 125.36014 * 180.02562 * 2 1 3 15 15 C 1.40898 * 126.93007 * 359.97438 * 14 2 1 16 16 H 1.08006 * 119.99718 * 30.79756 * 15 14 2 17 17 C 1.39739 * 120.00040 * 210.78927 * 15 14 2 18 18 N 1.31052 * 119.99821 * 19.54104 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 199.53933 * 17 15 14 20 20 H 1.48509 * 109.47017 * 90.00104 * 19 17 15 21 21 H 1.48492 * 109.47166 * 210.00044 * 19 17 15 22 22 H 1.48498 * 109.46934 * 330.00426 * 19 17 15 23 23 H 1.08999 * 109.47324 * 95.04719 * 1 2 3 24 24 H 1.09001 * 109.46877 * 215.04458 * 1 2 3 25 25 H 1.09001 * 109.46905 * 335.04154 * 1 2 3 26 26 H 1.07996 * 120.01303 * 359.97438 * 6 5 3 27 27 H 1.07993 * 119.68278 * 179.97438 * 7 6 5 28 28 H 1.08996 * 109.47105 * 179.97438 * 9 8 7 29 29 H 1.08995 * 109.47418 * 299.99865 * 10 9 8 30 30 H 1.09003 * 109.47214 * 60.00450 * 10 9 8 31 31 H 1.09001 * 109.47029 * 179.97438 * 10 9 8 32 32 H 1.09003 * 109.47238 * 60.00369 * 11 9 8 33 33 H 1.09001 * 109.47322 * 180.02562 * 11 9 8 34 34 H 1.08995 * 109.47369 * 300.00179 * 11 9 8 35 35 H 1.08003 * 120.15712 * 180.25362 * 12 8 7 36 36 H 0.97003 * 119.99384 * 174.43655 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.1063 0.0000 4 1 1.9609 2.0181 0.0006 5 6 3.6279 0.7548 -0.0006 6 6 4.8019 1.5014 -0.0013 7 6 6.0239 0.8632 -0.0023 8 6 6.0976 -0.5216 -0.0080 9 6 7.4425 -1.2016 -0.0148 10 6 8.2192 -0.7832 -1.2648 11 6 8.2269 -0.7930 1.2336 12 6 4.9453 -1.2785 -0.0020 13 6 3.7052 -0.6465 -0.0009 14 6 2.3108 -1.1327 -0.0005 15 6 1.8822 -2.4749 -0.0006 16 1 0.9524 -2.7448 -0.4792 17 6 2.6602 -3.4569 0.6184 18 7 3.5595 -3.1156 1.5085 19 14 2.4183 -5.2558 0.1772 20 1 3.3123 -5.6127 -0.9537 21 1 2.7453 -6.1021 1.3527 22 1 1.0051 -5.4827 -0.2184 23 1 -0.3634 -0.0904 -1.0237 24 1 -0.3633 -0.8414 0.5901 25 1 -0.3633 0.9317 0.4336 26 1 4.7559 2.5804 -0.0019 27 1 6.9323 1.4472 -0.0032 28 1 7.3030 -2.2826 -0.0182 29 1 7.6605 -1.0743 -2.1542 30 1 8.3588 0.2979 -1.2610 31 1 9.1921 -1.2747 -1.2695 32 1 7.6736 -1.0911 2.1242 33 1 9.1998 -1.2845 1.2285 34 1 8.3664 0.2880 1.2375 35 1 5.0046 -2.3569 -0.0023 36 1 4.0429 -3.8005 1.9966 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:17 Heat of formation + Delta-G solvation = 12.256546 kcal Electronic energy + Delta-G solvation = -17358.218519 eV Core-core repulsion = 14805.807523 eV Total energy + Delta-G solvation = -2552.410995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44319 -38.55607 -35.47837 -35.03036 -32.19387 -31.16735 -29.92530 -27.86353 -27.84998 -26.08829 -23.40800 -22.48953 -20.83652 -20.40046 -18.43186 -17.69319 -16.61929 -16.37941 -16.05305 -15.13116 -14.97870 -14.71239 -14.23028 -14.18213 -14.11820 -13.63942 -13.39217 -13.19791 -13.12185 -12.94083 -12.87842 -12.51358 -12.41018 -12.11660 -11.90561 -11.61350 -11.45072 -11.35984 -11.06784 -10.79233 -9.94166 -8.51234 -8.44388 -8.09018 -5.89503 0.66883 1.09572 1.37050 1.41537 1.51311 2.20455 2.33970 2.83762 3.18930 3.60406 4.03500 4.11525 4.37696 4.48122 4.50060 4.59645 4.68749 4.78285 4.89573 4.90649 4.97646 5.00885 5.07088 5.15712 5.22037 5.22512 5.36136 5.43478 5.50927 5.52975 5.56670 5.65265 5.88590 6.11880 6.28569 6.49629 6.50572 6.86727 7.11429 7.24856 7.44149 8.63577 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.010386 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.598876 B = 2695.264947 C = 4030.942463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.120 4.120 3 N -0.583 5.583 4 H 0.409 0.591 5 C 0.071 3.929 6 C -0.161 4.161 7 C -0.097 4.097 8 C -0.153 4.153 9 C -0.046 4.046 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.040 4.040 13 C -0.135 4.135 14 C 0.013 3.987 15 C -0.491 4.491 16 H 0.067 0.933 17 C 0.039 3.961 18 N -0.839 5.839 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.261 1.261 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 5.444 -2.285 8.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.224 4.224 3 N -0.188 5.188 4 H 0.246 0.754 5 C -0.039 4.039 6 C -0.182 4.182 7 C -0.116 4.116 8 C -0.155 4.155 9 C -0.065 4.065 10 C -0.190 4.190 11 C -0.189 4.189 12 C -0.059 4.059 13 C -0.141 4.141 14 C 0.007 3.993 15 C -0.524 4.524 16 H 0.085 0.915 17 C -0.172 4.172 18 N -0.468 5.468 19 Si 0.785 3.215 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.185 1.185 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.789 5.433 -2.174 8.232 hybrid contribution -0.609 -0.719 0.079 0.945 sum 5.180 4.715 -2.095 7.311 Atomic orbital electron populations 1.19820 0.87478 1.01587 1.00982 1.20823 0.93510 0.85546 1.22539 1.40813 1.03007 1.07365 1.67621 0.75416 1.18575 0.85547 0.94317 1.05434 1.20116 0.89609 0.98903 1.09616 1.20615 0.96571 0.93340 1.01025 1.19707 0.94215 0.94044 1.07486 1.19940 0.91493 0.98110 0.96915 1.21775 0.99364 1.02045 0.95768 1.21761 0.99279 1.01983 0.95923 1.20518 0.91023 0.98367 0.95992 1.19574 0.94578 0.92471 1.07503 1.18298 0.89317 0.92645 0.99087 1.18697 1.06938 0.91563 1.35176 0.91505 1.26356 0.93393 1.04139 0.93321 1.70033 1.21896 1.36159 1.18734 0.85516 0.79498 0.78004 0.78478 1.19646 1.19881 1.18469 0.92599 0.92585 0.91369 0.84914 0.84037 0.93175 0.94101 0.91558 0.91045 0.94700 0.91008 0.91600 0.89039 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.59 10.17 71.24 0.72 -0.86 16 2 C -0.12 -5.76 7.23 42.13 0.30 -5.46 16 3 N -0.58 -25.03 5.99 -173.35 -1.04 -26.07 16 4 H 0.41 13.91 8.96 -92.71 -0.83 13.08 16 5 C 0.07 3.30 7.23 38.87 0.28 3.58 16 6 C -0.16 -6.24 10.07 22.40 0.23 -6.01 16 7 C -0.10 -3.53 8.68 22.29 0.19 -3.34 16 8 C -0.15 -6.27 4.78 -19.85 -0.09 -6.36 16 9 C -0.05 -1.52 3.09 -11.54 -0.04 -1.56 16 10 C -0.13 -3.51 9.01 71.98 0.65 -2.86 16 11 C -0.13 -3.70 9.01 71.98 0.65 -3.05 16 12 C -0.04 -2.05 8.37 22.41 0.19 -1.86 16 13 C -0.13 -7.27 5.78 -20.04 -0.12 -7.39 16 14 C 0.01 0.71 5.72 -19.98 -0.11 0.59 16 15 C -0.49 -27.87 8.93 23.28 0.21 -27.67 16 16 H 0.07 3.69 7.92 -2.91 -0.02 3.67 16 17 C 0.04 2.13 4.88 85.17 0.42 2.54 16 18 N -0.84 -46.96 10.29 21.80 0.22 -46.73 16 19 Si 0.96 41.56 29.61 68.60 2.03 43.59 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.14 4.04 7.07 -2.91 -0.02 4.02 16 28 H 0.05 1.80 7.87 -2.39 -0.02 1.78 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.57 7.37 -2.39 -0.02 1.55 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.64 7.37 -2.39 -0.02 1.62 16 35 H 0.09 5.01 6.18 -2.91 -0.02 4.99 16 36 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -65.43 296.16 4.94 -60.49 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.24 Total: 28.43 kcal Atomic # 6 Polarization: -63.18 SS G_CDS: 3.48 Total: -59.71 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -0.81 Total: -72.80 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -65.43 4.94 -60.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.749 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds