Wall clock time and date at job start Mon Mar 30 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34242 * 125.03355 * 2 1 4 4 C 1.50700 * 126.50244 * 359.93063 * 3 2 1 5 5 C 1.50703 * 109.46787 * 90.02490 * 4 3 2 6 6 H 1.08001 * 120.00318 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99749 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99946 * 179.72745 * 7 5 4 9 9 Si 1.86804 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46768 * 90.00403 * 9 7 5 11 11 H 1.48501 * 109.47224 * 210.00044 * 9 7 5 12 12 H 1.48499 * 109.47267 * 330.00541 * 9 7 5 13 13 C 1.46490 * 106.99796 * 180.19162 * 3 2 1 14 14 C 1.39626 * 134.03582 * 179.73246 * 13 3 2 15 15 C 1.36629 * 119.76650 * 180.02562 * 14 13 3 16 16 C 1.38834 * 120.52617 * 0.02562 * 15 14 13 17 17 C 1.37753 * 120.66391 * 359.58198 * 16 15 14 18 18 C 1.50704 * 120.10523 * 179.97438 * 17 16 15 19 19 C 1.39120 * 119.78105 * 0.63530 * 17 16 15 20 20 N 1.36827 * 125.03557 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.06439 * 0.04824 * 20 2 1 22 22 H 1.09004 * 109.47442 * 89.99662 * 1 2 3 23 23 H 1.09001 * 109.46843 * 210.00069 * 1 2 3 24 24 H 1.08998 * 109.46924 * 329.99780 * 1 2 3 25 25 H 1.08990 * 109.47069 * 330.02592 * 4 3 2 26 26 H 1.09000 * 109.46928 * 210.02179 * 4 3 2 27 27 H 0.97002 * 120.00171 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.11527 * 0.06621 * 14 13 3 29 29 H 1.08000 * 119.73358 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.66464 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.46939 * 263.66908 * 18 17 16 32 32 H 1.09004 * 109.47121 * 23.66387 * 18 17 16 33 33 H 1.08994 * 109.47058 * 143.66901 * 18 17 16 34 34 H 1.09001 * 109.46592 * 96.98544 * 21 20 2 35 35 H 1.08998 * 109.47488 * 216.98669 * 21 20 2 36 36 H 1.09000 * 109.46882 * 336.99236 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5286 -0.0015 5 6 1.6404 3.0062 1.4189 6 1 1.8618 2.3411 2.2405 7 6 1.2104 4.2920 1.6696 8 7 1.0658 4.7071 2.9090 9 14 0.8268 5.4423 0.2485 10 1 -0.6027 5.3032 -0.1287 11 1 1.0962 6.8437 0.6594 12 1 1.6818 5.0944 -0.9147 13 6 3.6705 0.6457 -0.0047 14 6 4.9041 1.2996 -0.0115 15 6 6.0589 0.5695 -0.0150 16 6 6.0159 -0.8182 -0.0124 17 6 4.8098 -1.4836 0.0024 18 6 4.7777 -2.9903 0.0045 19 6 3.6214 -0.7603 0.0015 20 7 2.2925 -1.1203 0.0005 21 6 1.7938 -2.4979 0.0001 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 0.8415 2.5909 -0.5158 26 1 2.5298 3.1547 -0.5154 27 1 0.7636 5.6119 3.0854 28 1 4.9453 2.3789 -0.0133 29 1 7.0128 1.0758 -0.0207 30 1 6.9373 -1.3816 -0.0157 31 1 4.6448 -3.3523 -1.0151 32 1 5.7158 -3.3732 0.4065 33 1 3.9495 -3.3352 0.6234 34 1 1.7884 -2.8819 -1.0200 35 1 2.4415 -3.1190 0.6188 36 1 0.7804 -2.5175 0.4011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:39 Heat of formation + Delta-G solvation = 50.269562 kcal Electronic energy + Delta-G solvation = -17259.917866 eV Core-core repulsion = 14709.155239 eV Total energy + Delta-G solvation = -2550.762627 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91963 -36.91662 -34.24629 -32.60977 -31.14394 -30.68744 -29.00041 -27.24675 -25.77465 -24.81330 -22.24178 -21.08778 -20.27997 -18.01661 -16.67346 -16.13741 -15.79524 -15.21892 -14.70524 -14.12300 -13.90554 -13.46054 -13.10802 -12.95168 -12.65853 -12.60293 -12.44248 -12.13342 -12.01396 -11.74483 -11.47695 -11.26576 -10.85044 -10.68539 -10.47887 -10.24310 -9.97523 -9.96797 -9.28521 -8.61059 -8.49252 -7.50963 -6.70519 -5.98204 -3.95272 1.64809 2.14785 3.28394 3.33164 3.36257 3.41789 3.45933 4.42830 4.49166 4.90384 5.06397 5.16297 5.30276 5.30921 5.36524 5.39063 5.46834 5.59964 5.69900 5.74107 5.93517 6.00600 6.03106 6.10705 6.22088 6.39756 6.54051 6.58729 6.72197 6.95106 7.07813 7.17824 7.35712 7.42307 7.61204 7.80217 7.88029 7.96350 8.63987 9.09768 9.63343 11.15143 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.007496 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.598529 B = 3734.391569 C = 4418.335229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.046 3.954 3 C -0.105 4.105 4 C 0.050 3.950 5 C -0.503 4.503 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C -0.095 4.095 14 C -0.058 4.058 15 C -0.160 4.160 16 C -0.109 4.109 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.099 3.901 20 N -0.488 5.488 21 C 0.076 3.924 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -13.964 -7.617 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.111 4.111 4 C 0.012 3.988 5 C -0.542 4.542 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.100 4.100 14 C -0.077 4.077 15 C -0.180 4.180 16 C -0.129 4.129 17 C -0.112 4.112 18 C -0.168 4.168 19 C -0.007 4.007 20 N -0.174 5.174 21 C -0.066 4.066 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.763 -14.126 -7.509 16.434 hybrid contribution -0.191 0.625 -0.505 0.826 sum 3.572 -13.500 -8.013 16.101 Atomic orbital electron populations 1.20377 0.88330 1.03592 1.01853 1.19993 0.93185 0.84677 1.07892 1.20516 0.89552 0.95721 1.05304 1.18144 0.95406 0.87247 0.97985 1.21013 1.44235 0.98039 0.90875 0.91042 1.24995 0.95207 0.97848 0.95321 1.69908 1.47681 1.18015 1.18710 0.86860 0.79133 0.80344 0.83540 1.20278 1.21393 1.18876 1.19204 0.93855 0.91418 1.05565 1.20351 0.90506 0.99845 0.96976 1.20478 0.97666 0.93710 1.06107 1.20523 0.95597 0.94279 1.02458 1.18683 0.90463 0.94577 1.07472 1.20867 1.02253 0.92217 1.01430 1.17996 0.83958 0.93852 1.04929 1.43492 1.03602 1.05217 1.65072 1.22023 1.00827 0.81643 1.02119 0.91774 0.92556 0.88678 0.96189 0.95736 0.92809 0.86002 0.86711 0.86700 0.92100 0.91829 0.91916 0.92170 0.90247 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.61 36.00 0.35 -1.03 16 2 C 0.05 0.90 6.83 -81.77 -0.56 0.34 16 3 C -0.10 -2.38 5.50 -102.71 -0.57 -2.94 16 4 C 0.05 1.24 4.11 -29.03 -0.12 1.12 16 5 C -0.50 -14.54 9.65 -34.44 -0.33 -14.87 16 6 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 9 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 13 C -0.10 -2.04 6.35 -105.13 -0.67 -2.71 16 14 C -0.06 -1.15 10.05 -39.65 -0.40 -1.54 16 15 C -0.16 -2.64 9.97 -39.94 -0.40 -3.04 16 16 C -0.11 -1.67 9.65 -39.54 -0.38 -2.05 16 17 C -0.11 -1.74 5.89 -104.47 -0.62 -2.36 16 18 C -0.11 -1.31 9.30 36.01 0.33 -0.97 16 19 C 0.10 1.87 6.74 -83.99 -0.57 1.30 16 20 N -0.49 -8.52 3.18 -117.19 -0.37 -8.90 16 21 C 0.08 0.92 10.16 59.85 0.61 1.53 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.77 6.82 -51.93 -0.35 0.41 16 24 H 0.09 1.75 7.66 -51.93 -0.40 1.35 16 25 H 0.02 0.48 7.12 -51.93 -0.37 0.11 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.40 8.05 -52.49 -0.42 0.98 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 33 H 0.06 0.69 5.08 -51.93 -0.26 0.43 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.85 5.17 -51.93 -0.27 0.58 16 36 H 0.08 0.84 6.68 -51.93 -0.35 0.50 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -32.88 293.31 -8.17 -41.06 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.91 Total: -0.90 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.41 Total: -25.39 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.40 Total: -36.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.88 -8.17 -41.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.326 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds