Wall clock time and date at job start Mon Mar 30 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34242 * 125.03355 * 2 1 4 4 C 1.50700 * 126.50244 * 359.93063 * 3 2 1 5 5 C 1.50703 * 109.46787 * 90.02490 * 4 3 2 6 6 H 1.08001 * 120.00318 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99749 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99946 * 179.72745 * 7 5 4 9 9 Si 1.86804 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46768 * 90.00403 * 9 7 5 11 11 H 1.48501 * 109.47224 * 210.00044 * 9 7 5 12 12 H 1.48499 * 109.47267 * 330.00541 * 9 7 5 13 13 C 1.46490 * 106.99796 * 180.19162 * 3 2 1 14 14 C 1.39626 * 134.03582 * 179.73246 * 13 3 2 15 15 C 1.36629 * 119.76650 * 180.02562 * 14 13 3 16 16 C 1.38834 * 120.52617 * 0.02562 * 15 14 13 17 17 C 1.37753 * 120.66391 * 359.58198 * 16 15 14 18 18 C 1.50704 * 120.10523 * 179.97438 * 17 16 15 19 19 C 1.39120 * 119.78105 * 0.63530 * 17 16 15 20 20 N 1.36827 * 125.03557 * 179.97438 * 2 1 3 21 21 C 1.46500 * 125.06439 * 0.04824 * 20 2 1 22 22 H 1.09004 * 109.47442 * 89.99662 * 1 2 3 23 23 H 1.09001 * 109.46843 * 210.00069 * 1 2 3 24 24 H 1.08998 * 109.46924 * 329.99780 * 1 2 3 25 25 H 1.08990 * 109.47069 * 330.02592 * 4 3 2 26 26 H 1.09000 * 109.46928 * 210.02179 * 4 3 2 27 27 H 0.97002 * 120.00171 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.11527 * 0.06621 * 14 13 3 29 29 H 1.08000 * 119.73358 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.66464 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.46939 * 263.66908 * 18 17 16 32 32 H 1.09004 * 109.47121 * 23.66387 * 18 17 16 33 33 H 1.08994 * 109.47058 * 143.66901 * 18 17 16 34 34 H 1.09001 * 109.46592 * 96.98544 * 21 20 2 35 35 H 1.08998 * 109.47488 * 216.98669 * 21 20 2 36 36 H 1.09000 * 109.46882 * 336.99236 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5286 -0.0015 5 6 1.6404 3.0062 1.4189 6 1 1.8618 2.3411 2.2405 7 6 1.2104 4.2920 1.6696 8 7 1.0658 4.7071 2.9090 9 14 0.8268 5.4423 0.2485 10 1 -0.6027 5.3032 -0.1287 11 1 1.0962 6.8437 0.6594 12 1 1.6818 5.0944 -0.9147 13 6 3.6705 0.6457 -0.0047 14 6 4.9041 1.2996 -0.0115 15 6 6.0589 0.5695 -0.0150 16 6 6.0159 -0.8182 -0.0124 17 6 4.8098 -1.4836 0.0024 18 6 4.7777 -2.9903 0.0045 19 6 3.6214 -0.7603 0.0015 20 7 2.2925 -1.1203 0.0005 21 6 1.7938 -2.4979 0.0001 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 0.8415 2.5909 -0.5158 26 1 2.5298 3.1547 -0.5154 27 1 0.7636 5.6119 3.0854 28 1 4.9453 2.3789 -0.0133 29 1 7.0128 1.0758 -0.0207 30 1 6.9373 -1.3816 -0.0157 31 1 4.6448 -3.3523 -1.0151 32 1 5.7158 -3.3732 0.4065 33 1 3.9495 -3.3352 0.6234 34 1 1.7884 -2.8819 -1.0200 35 1 2.4415 -3.1190 0.6188 36 1 0.7804 -2.5175 0.4011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:39 Heat of formation + Delta-G solvation = 31.190992 kcal Electronic energy + Delta-G solvation = -17260.745175 eV Core-core repulsion = 14709.155239 eV Total energy + Delta-G solvation = -2551.589936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28706 -38.22153 -35.87244 -34.47745 -32.63999 -31.99577 -30.66870 -28.48730 -27.15303 -26.17832 -24.09248 -22.45468 -21.61522 -19.51750 -18.92251 -17.49107 -17.11329 -16.47809 -16.18005 -15.98980 -15.11979 -14.88129 -14.44357 -14.27956 -14.08668 -14.01471 -13.79721 -13.62644 -13.33086 -13.11669 -13.08281 -12.55631 -12.36746 -12.28422 -11.96766 -11.84834 -11.68341 -11.58691 -11.41762 -10.74917 -10.04749 -8.87792 -8.27694 -8.13755 -6.29384 0.28650 0.79854 1.35150 1.38094 1.50816 1.85585 2.03305 2.37411 3.04216 3.07393 3.85769 3.90521 3.96295 4.11459 4.20700 4.34795 4.47190 4.51357 4.60439 4.66063 4.71568 4.78085 4.80277 4.86919 5.02494 5.05171 5.13187 5.18070 5.23425 5.30901 5.53282 5.61395 5.72861 5.82272 5.99630 6.11414 6.34461 6.44251 6.62807 6.76466 7.33290 8.90817 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.007496 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.598529 B = 3734.391569 C = 4418.335229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.058 3.942 3 C -0.172 4.172 4 C 0.065 3.935 5 C -0.507 4.507 6 H 0.019 0.981 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.948 3.052 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.253 1.253 13 C -0.134 4.134 14 C -0.101 4.101 15 C -0.150 4.150 16 C -0.112 4.112 17 C -0.104 4.104 18 C -0.109 4.109 19 C 0.080 3.920 20 N -0.485 5.485 21 C 0.065 3.935 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.013 0.987 27 H 0.266 0.734 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -16.649 -9.422 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.178 4.178 4 C 0.027 3.973 5 C -0.545 4.545 6 H 0.037 0.963 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.177 1.177 13 C -0.139 4.139 14 C -0.120 4.120 15 C -0.169 4.169 16 C -0.131 4.131 17 C -0.107 4.107 18 C -0.165 4.165 19 C -0.026 4.026 20 N -0.169 5.169 21 C -0.074 4.074 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.159 0.841 30 H 0.174 0.826 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.134 -16.860 -9.322 19.704 hybrid contribution -0.227 1.316 0.134 1.342 sum 3.907 -15.544 -9.188 18.474 Atomic orbital electron populations 1.20434 0.86216 1.03720 1.03545 1.20367 0.94543 0.84913 1.05000 1.20473 0.91440 0.95414 1.10468 1.17847 0.95377 0.89213 0.94885 1.21166 1.43880 0.97616 0.91833 0.96303 1.25953 0.94858 0.99671 0.98420 1.70068 1.49104 1.18802 1.21338 0.85685 0.79898 0.77517 0.79773 1.18324 1.20810 1.17662 1.19520 0.93771 0.93509 1.07117 1.20430 0.91734 0.99367 1.00482 1.20833 0.97471 0.94760 1.03836 1.21025 0.97147 0.93788 1.01114 1.19267 0.89373 0.97106 1.04963 1.20950 1.03950 0.88667 1.02899 1.18346 0.85530 0.93075 1.05681 1.43747 1.02932 1.06571 1.63663 1.22435 1.02001 0.78804 1.04195 0.89156 0.89428 0.91492 0.95297 0.96876 0.92500 0.88028 0.84129 0.82600 0.90327 0.89539 0.91102 0.89826 0.88487 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.59 9.61 71.23 0.68 -1.91 16 2 C 0.06 2.27 6.83 40.87 0.28 2.55 16 3 C -0.17 -8.16 5.50 -18.62 -0.10 -8.26 16 4 C 0.06 3.37 4.11 29.10 0.12 3.49 16 5 C -0.51 -31.18 9.65 25.60 0.25 -30.93 16 6 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 7 C 0.01 0.44 5.47 84.66 0.46 0.90 16 8 N -0.95 -61.65 13.96 21.45 0.30 -61.36 16 9 Si 0.95 45.79 27.47 68.60 1.88 47.67 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 13 C -0.13 -6.01 6.35 -20.20 -0.13 -6.14 16 14 C -0.10 -4.21 10.05 22.23 0.22 -3.99 16 15 C -0.15 -4.86 9.97 22.04 0.22 -4.64 16 16 C -0.11 -3.11 9.65 22.30 0.22 -2.89 16 17 C -0.10 -3.06 5.89 -19.77 -0.12 -3.18 16 18 C -0.11 -2.05 9.30 71.24 0.66 -1.39 16 19 C 0.08 2.97 6.74 39.03 0.26 3.24 16 20 N -0.48 -16.23 3.18 -524.69 -1.67 -17.89 16 21 C 0.07 1.34 10.16 127.77 1.30 2.64 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 23 H 0.09 2.18 6.82 -2.39 -0.02 2.16 16 24 H 0.07 2.51 7.66 -2.39 -0.02 2.49 16 25 H 0.03 1.42 7.12 -2.39 -0.02 1.40 16 26 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 27 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.16 3.03 8.05 -2.91 -0.02 3.01 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.07 1.24 5.08 -2.39 -0.01 1.23 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.67 5.17 -2.39 -0.01 1.66 16 36 H 0.10 1.66 6.68 -2.39 -0.02 1.64 16 Total: -1.00 -77.51 293.31 5.86 -71.65 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.01 Total: 10.44 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 4.33 Total: -50.51 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.37 Total: -79.25 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal Total: -77.51 5.86 -71.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.840 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds