Wall clock time and date at job start Mon Mar 30 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38834 * 119.66941 * 2 1 4 4 C 1.36626 * 120.52507 * 180.02562 * 3 2 1 5 5 C 1.39632 * 119.76677 * 359.97438 * 4 3 2 6 6 C 1.46487 * 134.03020 * 180.02562 * 5 4 3 7 7 C 1.50703 * 126.49957 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46986 * 84.71460 * 7 6 5 9 9 H 1.08004 * 120.00116 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00120 * 179.71929 * 8 7 6 11 11 N 1.31516 * 120.00084 * 0.27642 * 10 8 7 12 12 Si 1.86798 * 120.00202 * 180.27524 * 10 8 7 13 13 H 1.48498 * 109.47261 * 90.00350 * 12 10 8 14 14 H 1.48495 * 109.47316 * 210.00263 * 12 10 8 15 15 H 1.48499 * 109.47110 * 330.00245 * 12 10 8 16 16 C 1.34237 * 106.99461 * 179.73233 * 6 5 4 17 17 N 1.36828 * 109.93029 * 0.22920 * 16 6 5 18 18 C 1.46505 * 125.06053 * 180.02562 * 17 16 6 19 19 C 1.37681 * 109.87475 * 359.97438 * 17 16 6 20 20 C 1.37756 * 119.66154 * 180.35321 * 2 1 3 21 21 C 1.50696 * 120.11198 * 359.52228 * 20 2 1 22 22 H 1.09001 * 109.47209 * 89.99390 * 1 2 3 23 23 H 1.08995 * 109.47565 * 210.00030 * 1 2 3 24 24 H 1.09004 * 109.46942 * 330.00217 * 1 2 3 25 25 H 1.07993 * 119.73524 * 0.02562 * 3 2 1 26 26 H 1.08005 * 120.11159 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.47531 * 324.71845 * 7 6 5 28 28 H 1.09002 * 109.47008 * 204.71249 * 7 6 5 29 29 H 0.97000 * 120.00342 * 179.97438 * 11 10 8 30 30 H 1.08001 * 125.03039 * 180.26133 * 16 6 5 31 31 H 1.08994 * 109.47161 * 97.02314 * 18 17 16 32 32 H 1.08995 * 109.46561 * 217.02429 * 18 17 16 33 33 H 1.08994 * 109.46787 * 337.01855 * 18 17 16 34 34 H 1.09002 * 109.46657 * 263.77045 * 21 20 2 35 35 H 1.09000 * 109.47022 * 23.76826 * 21 20 2 36 36 H 1.09000 * 109.47002 * 143.77171 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 -0.0005 5 6 4.2716 0.0251 -0.0005 6 6 5.6965 -0.3145 -0.0005 7 6 6.8494 0.6560 -0.0011 8 6 7.1495 1.0803 1.4135 9 1 6.5637 0.6868 2.2312 10 6 8.1753 1.9667 1.6645 11 7 8.8884 2.4462 0.6689 12 14 8.5523 2.4866 3.4186 13 1 9.5463 1.5543 4.0085 14 1 9.1054 3.8646 3.4185 15 1 7.3047 2.4541 4.2235 16 6 5.7805 -1.6543 0.0055 17 7 4.5259 -2.2003 0.0042 18 6 4.2327 -3.6357 0.0100 19 6 3.5800 -1.1998 -0.0023 20 6 2.1887 -1.1970 -0.0074 21 6 1.4301 -2.4991 -0.0045 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6445 2.1359 0.0004 26 1 4.0881 2.1690 -0.0009 27 1 6.5871 1.5315 -0.5950 28 1 7.7285 0.1756 -0.4306 29 1 9.6098 3.0701 0.8454 30 1 6.7019 -2.2176 0.0111 31 1 4.0337 -3.9617 1.0308 32 1 3.3581 -3.8303 -0.6106 33 1 5.0882 -4.1828 -0.3860 34 1 1.3510 -2.8712 1.0169 35 1 0.4316 -2.3388 -0.4112 36 1 1.9591 -3.2291 -0.6172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:45 Heat of formation + Delta-G solvation = 47.426479 kcal Electronic energy + Delta-G solvation = -17040.058517 eV Core-core repulsion = 14489.172605 eV Total energy + Delta-G solvation = -2550.885913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79300 -37.20572 -34.17793 -32.79623 -30.98079 -30.62290 -28.74970 -26.51251 -25.80105 -24.61563 -22.66363 -21.30042 -20.09375 -18.13850 -16.28229 -16.06220 -15.68071 -15.08249 -14.81139 -14.37125 -13.89195 -13.65091 -13.04006 -12.86168 -12.63197 -12.43139 -12.34886 -12.15414 -11.84718 -11.73571 -11.53121 -11.11536 -10.83551 -10.69628 -10.40876 -10.37022 -10.09391 -9.58856 -9.35553 -8.50911 -8.32110 -7.46942 -6.71380 -5.92380 -3.96131 1.68900 2.18345 3.35498 3.36939 3.41150 3.44446 3.51943 4.42142 4.56154 4.93024 5.06073 5.18563 5.33067 5.35905 5.39989 5.44586 5.51350 5.57419 5.64460 5.69564 5.79253 5.94844 6.00933 6.08798 6.20869 6.38172 6.50640 6.66655 6.86847 7.06966 7.18296 7.43911 7.53389 7.65739 7.78303 7.97573 8.03520 8.07653 8.48815 9.09328 9.66948 11.15804 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026310 B = 0.006543 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.986803 B = 4278.503190 C = 4861.425510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C -0.161 4.161 4 C -0.051 4.051 5 C -0.102 4.102 6 C -0.104 4.104 7 C 0.081 3.919 8 C -0.503 4.503 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.006 3.994 17 N -0.494 5.494 18 C 0.079 3.921 19 C 0.101 3.899 20 C -0.112 4.112 21 C -0.113 4.113 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.027 0.973 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.160 0.840 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 -9.552 -2.402 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.069 4.069 5 C -0.108 4.108 6 C -0.110 4.110 7 C 0.043 3.957 8 C -0.542 4.542 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.115 4.115 17 N -0.179 5.179 18 C -0.063 4.063 19 C -0.005 4.005 20 C -0.115 4.115 21 C -0.169 4.169 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.142 0.858 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.177 0.823 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.710 -9.802 -2.436 17.029 hybrid contribution 0.447 0.250 1.067 1.184 sum -13.263 -9.551 -1.368 16.401 Atomic orbital electron populations 1.20727 0.91929 1.02103 1.01569 1.19246 0.94917 0.91987 1.01808 1.20360 0.93942 0.96708 1.07066 1.20372 0.93183 0.97178 0.96206 1.19263 0.93497 0.91876 1.06135 1.21233 0.93396 0.93415 1.02965 1.17711 0.88878 0.91913 0.97170 1.21134 1.15187 1.25430 0.92435 0.92705 1.24994 0.96207 0.96295 0.96914 1.69958 1.21064 1.32025 1.30663 0.86601 0.78509 0.77790 0.85197 1.20757 1.21237 1.19895 1.21519 0.86457 0.93914 1.09639 1.43565 1.04827 1.04418 1.65083 1.22010 1.02532 0.79608 1.02172 1.18029 0.89918 0.88064 1.04522 1.18453 0.89420 0.94952 1.08649 1.20905 0.99807 0.94797 1.01440 0.91844 0.91977 0.91922 0.86799 0.85810 0.95471 0.95665 0.93022 0.82264 0.92221 0.90381 0.90443 0.92141 0.91563 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.17 36.00 0.33 -0.89 16 2 C -0.08 -1.22 5.88 -104.58 -0.61 -1.84 16 3 C -0.16 -2.74 9.62 -39.94 -0.38 -3.12 16 4 C -0.05 -1.03 10.05 -39.64 -0.40 -1.42 16 5 C -0.10 -2.23 6.35 -105.14 -0.67 -2.90 16 6 C -0.10 -2.41 5.51 -102.71 -0.57 -2.98 16 7 C 0.08 2.16 5.51 -29.03 -0.16 2.00 16 8 C -0.50 -14.52 9.09 -34.44 -0.31 -14.83 16 9 H 0.05 1.60 7.74 -52.48 -0.41 1.19 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 12 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.01 0.11 11.19 -16.73 -0.19 -0.08 16 17 N -0.49 -8.63 3.18 -121.81 -0.39 -9.02 16 18 C 0.08 0.95 10.31 59.85 0.62 1.56 16 19 C 0.10 1.93 6.74 -83.99 -0.57 1.36 16 20 C -0.11 -1.81 5.89 -104.47 -0.62 -2.43 16 21 C -0.11 -1.35 8.65 36.00 0.31 -1.04 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 24 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.81 5.17 -51.93 -0.27 0.54 16 33 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.68 6.31 -51.93 -0.33 0.35 16 36 H 0.06 0.67 5.07 -51.93 -0.26 0.41 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -32.28 296.95 -8.47 -40.75 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.96 Total: -1.94 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.31 Total: -25.07 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.35 Total: -35.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.28 -8.47 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.178 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds