Wall clock time and date at job start Mon Mar 30 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38834 * 119.66941 * 2 1 4 4 C 1.36626 * 120.52507 * 180.02562 * 3 2 1 5 5 C 1.39632 * 119.76677 * 359.97438 * 4 3 2 6 6 C 1.46487 * 134.03020 * 180.02562 * 5 4 3 7 7 C 1.50703 * 126.49957 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46986 * 84.71460 * 7 6 5 9 9 H 1.08004 * 120.00116 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00120 * 179.71929 * 8 7 6 11 11 N 1.31516 * 120.00084 * 0.27642 * 10 8 7 12 12 Si 1.86798 * 120.00202 * 180.27524 * 10 8 7 13 13 H 1.48498 * 109.47261 * 90.00350 * 12 10 8 14 14 H 1.48495 * 109.47316 * 210.00263 * 12 10 8 15 15 H 1.48499 * 109.47110 * 330.00245 * 12 10 8 16 16 C 1.34237 * 106.99461 * 179.73233 * 6 5 4 17 17 N 1.36828 * 109.93029 * 0.22920 * 16 6 5 18 18 C 1.46505 * 125.06053 * 180.02562 * 17 16 6 19 19 C 1.37681 * 109.87475 * 359.97438 * 17 16 6 20 20 C 1.37756 * 119.66154 * 180.35321 * 2 1 3 21 21 C 1.50696 * 120.11198 * 359.52228 * 20 2 1 22 22 H 1.09001 * 109.47209 * 89.99390 * 1 2 3 23 23 H 1.08995 * 109.47565 * 210.00030 * 1 2 3 24 24 H 1.09004 * 109.46942 * 330.00217 * 1 2 3 25 25 H 1.07993 * 119.73524 * 0.02562 * 3 2 1 26 26 H 1.08005 * 120.11159 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.47531 * 324.71845 * 7 6 5 28 28 H 1.09002 * 109.47008 * 204.71249 * 7 6 5 29 29 H 0.97000 * 120.00342 * 179.97438 * 11 10 8 30 30 H 1.08001 * 125.03039 * 180.26133 * 16 6 5 31 31 H 1.08994 * 109.47161 * 97.02314 * 18 17 16 32 32 H 1.08995 * 109.46561 * 217.02429 * 18 17 16 33 33 H 1.08994 * 109.46787 * 337.01855 * 18 17 16 34 34 H 1.09002 * 109.46657 * 263.77045 * 21 20 2 35 35 H 1.09000 * 109.47022 * 23.76826 * 21 20 2 36 36 H 1.09000 * 109.47002 * 143.77171 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 -0.0005 5 6 4.2716 0.0251 -0.0005 6 6 5.6965 -0.3145 -0.0005 7 6 6.8494 0.6560 -0.0011 8 6 7.1495 1.0803 1.4135 9 1 6.5637 0.6868 2.2312 10 6 8.1753 1.9667 1.6645 11 7 8.8884 2.4462 0.6689 12 14 8.5523 2.4866 3.4186 13 1 9.5463 1.5543 4.0085 14 1 9.1054 3.8646 3.4185 15 1 7.3047 2.4541 4.2235 16 6 5.7805 -1.6543 0.0055 17 7 4.5259 -2.2003 0.0042 18 6 4.2327 -3.6357 0.0100 19 6 3.5800 -1.1998 -0.0023 20 6 2.1887 -1.1970 -0.0074 21 6 1.4301 -2.4991 -0.0045 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6445 2.1359 0.0004 26 1 4.0881 2.1690 -0.0009 27 1 6.5871 1.5315 -0.5950 28 1 7.7285 0.1756 -0.4306 29 1 9.6098 3.0701 0.8454 30 1 6.7019 -2.2176 0.0111 31 1 4.0337 -3.9617 1.0308 32 1 3.3581 -3.8303 -0.6106 33 1 5.0882 -4.1828 -0.3860 34 1 1.3510 -2.8712 1.0169 35 1 0.4316 -2.3388 -0.4112 36 1 1.9591 -3.2291 -0.6172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:45 Heat of formation + Delta-G solvation = 29.843423 kcal Electronic energy + Delta-G solvation = -17040.820976 eV Core-core repulsion = 14489.172605 eV Total energy + Delta-G solvation = -2551.648371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20221 -38.50682 -35.85116 -34.61857 -32.52644 -31.83292 -30.29868 -28.01360 -27.01855 -26.03495 -24.53079 -22.71142 -21.41703 -19.70770 -18.45548 -17.52003 -17.01763 -16.48115 -16.30332 -16.02650 -15.12775 -14.62564 -14.43837 -14.25321 -14.00954 -14.00050 -13.79090 -13.47317 -13.14468 -13.08908 -12.88087 -12.76507 -12.56908 -12.29927 -11.92562 -11.79463 -11.68577 -11.48466 -11.31502 -10.57661 -10.00097 -8.87720 -8.34140 -8.01009 -6.29233 0.29278 0.79332 1.36854 1.39020 1.50359 1.91393 2.08345 2.42726 3.01857 3.12404 3.86426 3.95300 4.05675 4.13283 4.21922 4.33063 4.46555 4.56359 4.65371 4.70047 4.84476 4.84782 4.95486 4.96183 4.99976 5.04391 5.20350 5.30116 5.35736 5.41007 5.60112 5.74810 5.80881 5.84856 6.02385 6.10022 6.27918 6.44811 6.64479 6.82652 7.38604 8.92326 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026310 B = 0.006543 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.986803 B = 4278.503190 C = 4861.425510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.082 4.082 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.142 4.142 6 C -0.164 4.164 7 C 0.096 3.904 8 C -0.520 4.520 9 H 0.045 0.955 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.272 1.272 16 C 0.026 3.974 17 N -0.487 5.487 18 C 0.069 3.931 19 C 0.088 3.912 20 C -0.109 4.109 21 C -0.111 4.111 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.097 0.903 27 H -0.010 1.010 28 H 0.004 0.996 29 H 0.265 0.735 30 H 0.179 0.821 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -11.822 -1.409 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 C -0.172 4.172 4 C -0.111 4.111 5 C -0.147 4.147 6 C -0.170 4.170 7 C 0.058 3.942 8 C -0.558 4.558 9 H 0.063 0.937 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.196 1.196 16 C -0.098 4.098 17 N -0.171 5.171 18 C -0.071 4.071 19 C -0.019 4.019 20 C -0.111 4.111 21 C -0.167 4.167 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.155 0.845 26 H 0.116 0.884 27 H 0.009 0.991 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.435 -12.106 -1.447 20.464 hybrid contribution 1.200 0.917 0.700 1.665 sum -15.235 -11.188 -0.747 18.917 Atomic orbital electron populations 1.20805 0.88218 1.03725 1.03173 1.19805 0.97485 0.91010 1.00031 1.20688 0.92605 0.98838 1.05039 1.20385 0.94864 0.96064 0.99797 1.19486 0.93201 0.93916 1.08070 1.20946 0.93351 0.94507 1.08209 1.17322 0.89775 0.91487 0.95568 1.21373 1.15382 1.25964 0.93129 0.93684 1.25898 0.95808 0.96043 1.01595 1.70083 1.21561 1.32526 1.33044 0.85484 0.78459 0.77830 0.79509 1.19332 1.20262 1.19626 1.21678 0.88293 0.93024 1.06801 1.43813 1.03422 1.06420 1.63466 1.22429 1.04577 0.76157 1.03901 1.18341 0.91271 0.87293 1.04973 1.19030 0.88390 0.97404 1.06326 1.20999 1.00515 0.92408 1.02763 0.90035 0.89948 0.90836 0.84492 0.88445 0.99126 0.97790 0.92630 0.80352 0.90649 0.88109 0.88310 0.90785 0.89095 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.17 71.23 0.65 -1.23 16 2 C -0.08 -2.36 5.88 -19.84 -0.12 -2.47 16 3 C -0.15 -5.17 9.62 22.04 0.21 -4.95 16 4 C -0.09 -3.99 10.05 22.23 0.22 -3.76 16 5 C -0.14 -6.51 6.35 -20.20 -0.13 -6.64 16 6 C -0.16 -8.10 5.51 -18.63 -0.10 -8.20 16 7 C 0.10 5.59 5.51 29.10 0.16 5.75 16 8 C -0.52 -31.78 9.09 25.60 0.23 -31.55 16 9 H 0.04 2.77 7.74 -2.91 -0.02 2.74 16 10 C 0.00 0.25 5.46 84.65 0.46 0.71 16 11 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 12 Si 0.96 46.38 29.54 68.60 2.03 48.40 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 16 C 0.03 1.03 11.19 83.00 0.93 1.96 16 17 N -0.49 -16.40 3.18 -539.29 -1.71 -18.11 16 18 C 0.07 1.41 10.31 127.77 1.32 2.73 16 19 C 0.09 3.31 6.74 39.03 0.26 3.57 16 20 C -0.11 -3.24 5.89 -19.76 -0.12 -3.36 16 21 C -0.11 -2.11 8.65 71.23 0.62 -1.50 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.22 6.54 -2.39 -0.02 1.20 16 24 H 0.07 1.22 8.08 -2.38 -0.02 1.20 16 25 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 26 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.18 6.27 8.06 -2.91 -0.02 6.25 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.62 5.17 -2.39 -0.01 1.61 16 33 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.32 6.31 -2.39 -0.02 1.30 16 36 H 0.07 1.24 5.07 -2.39 -0.01 1.23 16 Total: -1.00 -75.36 296.95 6.27 -69.09 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.07 Total: 7.65 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 4.61 Total: -48.95 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.43 Total: -76.20 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.36 6.27 -69.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.936 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds