Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38890 * 125.36413 * 2 1 4 4 C 1.40896 * 126.92916 * 359.76050 * 3 2 1 5 5 H 1.08003 * 119.99908 * 327.06492 * 4 3 2 6 6 C 1.39739 * 119.99869 * 147.07481 * 4 3 2 7 7 N 1.31048 * 120.00274 * 341.43728 * 6 4 3 8 8 Si 1.86796 * 119.99961 * 161.44737 * 6 4 3 9 9 H 1.48493 * 109.47540 * 59.99290 * 8 6 4 10 10 H 1.48496 * 109.47322 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46953 * 299.99369 * 8 6 4 12 12 C 1.47675 * 106.13833 * 180.02562 * 3 2 1 13 13 C 1.39189 * 133.77504 * 179.97438 * 12 3 2 14 14 C 1.37882 * 119.69398 * 180.02562 * 13 12 3 15 15 C 1.38668 * 120.24938 * 359.95047 * 14 13 12 16 16 C 1.50700 * 119.68679 * 180.02562 * 15 14 13 17 17 C 1.37861 * 120.62638 * 0.04838 * 15 14 13 18 18 C 1.50702 * 120.01661 * 179.97438 * 17 15 14 19 19 C 1.39122 * 119.96998 * 359.97438 * 17 15 14 20 20 N 1.35641 * 125.35213 * 180.02562 * 2 1 3 21 21 C 1.46499 * 124.69284 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.47194 * 95.54874 * 1 2 3 23 23 H 1.09000 * 109.47492 * 215.55317 * 1 2 3 24 24 H 1.09006 * 109.46473 * 335.55617 * 1 2 3 25 25 H 0.96991 * 120.00580 * 185.07681 * 7 6 4 26 26 H 1.07998 * 120.15516 * 359.97438 * 13 12 3 27 27 H 1.07997 * 119.87382 * 179.97438 * 14 13 12 28 28 H 1.08997 * 109.47601 * 270.02343 * 16 15 14 29 29 H 1.09003 * 109.46876 * 30.02615 * 16 15 14 30 30 H 1.08999 * 109.47490 * 150.02415 * 16 15 14 31 31 H 1.09006 * 109.47127 * 263.27514 * 18 17 15 32 32 H 1.09002 * 109.47246 * 23.27157 * 18 17 15 33 33 H 1.08996 * 109.47082 * 143.27283 * 18 17 15 34 34 H 1.09000 * 109.47179 * 97.01244 * 21 20 2 35 35 H 1.09005 * 109.47075 * 217.01252 * 21 20 2 36 36 H 1.09005 * 109.47154 * 337.00961 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1326 0.0000 4 6 1.8823 2.4748 -0.0047 5 1 0.9720 2.7493 -0.5170 6 6 2.6353 3.4510 0.6533 7 7 3.5128 3.1002 1.5612 8 14 2.3909 5.2559 0.2389 9 1 0.9837 5.6412 0.5155 10 1 3.3025 6.0825 1.0701 11 1 2.6918 5.4790 -1.1982 12 6 3.7052 0.6464 -0.0006 13 6 4.9454 1.2782 -0.0014 14 6 6.0978 0.5211 -0.0024 15 6 6.0238 -0.8636 -0.0016 16 6 7.2913 -1.6787 -0.0021 17 6 4.8017 -1.5016 -0.0008 18 6 4.7374 -3.0073 -0.0006 19 6 3.6279 -0.7549 -0.0003 20 7 2.2918 -1.1063 -0.0005 21 6 1.7918 -2.4833 -0.0006 22 1 -0.3634 -0.0994 -1.0229 23 1 -0.3634 -0.8361 0.5975 24 1 -0.3632 0.9356 0.4253 25 1 3.9823 3.7795 2.0700 26 1 5.0049 2.3566 -0.0020 27 1 7.0616 1.0084 -0.0034 28 1 7.5965 -1.8755 -1.0299 29 1 8.0786 -1.1266 0.5113 30 1 7.1159 -2.6237 0.5119 31 1 4.6010 -3.3653 -1.0211 32 1 5.6653 -3.4106 0.4050 33 1 3.8993 -3.3350 0.6144 34 1 1.7854 -2.8675 -1.0206 35 1 2.4394 -3.1050 0.6177 36 1 0.7787 -2.5021 0.4012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = 31.780766 kcal Electronic energy + Delta-G solvation = -17613.100864 eV Core-core repulsion = 15061.536502 eV Total energy + Delta-G solvation = -2551.564362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66025 -38.23035 -35.83432 -33.92332 -32.49044 -31.78734 -29.81223 -28.83823 -26.85186 -26.10201 -24.55259 -22.38777 -21.03997 -19.95937 -18.17724 -17.23656 -16.59138 -16.40538 -16.08308 -15.83075 -14.78352 -14.60037 -14.47336 -13.99177 -13.92218 -13.64592 -13.50663 -13.32744 -13.17081 -13.01957 -12.83150 -12.72763 -12.56726 -12.41011 -11.93973 -11.89100 -11.64740 -11.21981 -11.06140 -10.75589 -9.68068 -8.49403 -8.41079 -7.98018 -5.89385 0.62344 1.07565 1.37259 1.41504 1.49982 2.17196 2.33480 2.51634 3.13636 3.58735 4.07894 4.14825 4.30139 4.40852 4.43248 4.48796 4.53183 4.62631 4.63689 4.82248 4.87960 4.94163 4.97749 5.01178 5.15130 5.16887 5.21900 5.34477 5.36380 5.46068 5.58112 5.71145 6.00268 6.05619 6.26682 6.49797 6.52309 6.90981 7.01622 7.24852 7.32374 8.65443 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.009773 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.975776 B = 2864.289450 C = 4007.241693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.117 4.117 3 C 0.016 3.984 4 C -0.493 4.493 5 H 0.067 0.933 6 C 0.038 3.962 7 N -0.845 5.845 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.269 1.269 12 C -0.143 4.143 13 C -0.046 4.046 14 C -0.197 4.197 15 C -0.087 4.087 16 C -0.098 4.098 17 C -0.136 4.136 18 C -0.105 4.105 19 C 0.081 3.919 20 N -0.480 5.480 21 C 0.074 3.926 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.275 0.725 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -9.919 -2.135 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.221 4.221 3 C 0.010 3.990 4 C -0.526 4.526 5 H 0.085 0.915 6 C -0.173 4.173 7 N -0.474 5.474 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.194 1.194 12 C -0.149 4.149 13 C -0.065 4.065 14 C -0.217 4.217 15 C -0.088 4.088 16 C -0.154 4.154 17 C -0.139 4.139 18 C -0.161 4.161 19 C -0.028 4.028 20 N -0.165 5.165 21 C -0.067 4.067 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.080 -10.146 -2.014 10.551 hybrid contribution -0.238 1.492 0.014 1.511 sum 1.843 -8.654 -2.000 9.071 Atomic orbital electron populations 1.19836 0.87514 1.01734 1.00726 1.20892 0.93605 0.85199 1.22364 1.18271 0.89180 0.92578 0.98992 1.18658 1.08933 0.91712 1.33263 0.91516 1.26376 0.93366 1.04233 0.93313 1.70020 1.23136 1.36398 1.17887 0.85533 0.79045 0.77814 0.78885 1.18570 1.19978 1.19364 1.19592 0.94628 0.92604 1.08055 1.20526 0.91558 0.98443 0.95935 1.20796 0.97003 0.94061 1.09846 1.19608 0.94851 0.93284 1.01078 1.20760 0.92791 0.99210 1.02654 1.18909 0.89419 0.96356 1.09221 1.20959 1.03446 0.89573 1.02133 1.18376 0.85181 0.93752 1.05496 1.43017 1.02675 1.05909 1.64905 1.22208 1.01226 0.80435 1.02818 0.92602 0.91561 0.92388 0.91560 0.89065 0.86116 0.90558 0.91421 0.90059 0.91289 0.89474 0.91548 0.91508 0.89144 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.60 9.78 71.24 0.70 -0.90 16 2 C -0.12 -5.77 6.96 42.13 0.29 -5.48 16 3 C 0.02 0.90 5.69 -19.98 -0.11 0.79 16 4 C -0.49 -28.41 8.76 23.28 0.20 -28.21 16 5 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 6 C 0.04 2.09 4.89 85.17 0.42 2.50 16 7 N -0.85 -48.32 10.52 21.80 0.23 -48.09 16 8 Si 0.96 42.17 29.60 68.60 2.03 44.20 16 9 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 C -0.14 -7.91 5.78 -20.04 -0.12 -8.03 16 13 C -0.05 -2.43 8.80 22.41 0.20 -2.23 16 14 C -0.20 -8.67 9.68 22.29 0.22 -8.45 16 15 C -0.09 -3.34 5.88 -19.85 -0.12 -3.46 16 16 C -0.10 -2.60 9.57 71.24 0.68 -1.92 16 17 C -0.14 -5.41 5.90 -19.74 -0.12 -5.52 16 18 C -0.11 -2.96 8.94 71.24 0.64 -2.32 16 19 C 0.08 3.87 6.72 38.87 0.26 4.13 16 20 N -0.48 -21.13 3.15 -521.48 -1.64 -22.77 16 21 C 0.07 2.24 10.07 127.77 1.29 3.53 16 22 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 23 H 0.07 2.18 7.01 -2.39 -0.02 2.16 16 24 H 0.06 2.41 7.77 -2.38 -0.02 2.39 16 25 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.09 5.10 6.48 -2.91 -0.02 5.09 16 27 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 30 H 0.08 1.82 5.84 -2.39 -0.01 1.81 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.09 2.00 5.67 -2.39 -0.01 1.99 16 33 H 0.07 1.76 4.93 -2.39 -0.01 1.74 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.40 5.05 -2.38 -0.01 2.39 16 36 H 0.09 2.31 6.74 -2.38 -0.02 2.29 16 Total: -1.00 -69.46 286.42 6.13 -63.33 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.09 Total: 18.91 kcal Atomic # 6 Polarization: -60.00 SS G_CDS: 4.43 Total: -55.57 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.41 Total: -70.86 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -69.46 6.13 -63.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.111 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds