Wall clock time and date at job start Mon Mar 30 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36661 * 119.73822 * 2 1 4 4 C 1.39585 * 119.76936 * 179.97438 * 3 2 1 5 5 C 1.46490 * 134.03917 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.50445 * 0.02562 * 5 4 3 7 7 C 1.50696 * 109.47360 * 84.99443 * 6 5 4 8 8 H 1.07997 * 119.99866 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00023 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00033 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00348 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47201 * 89.99767 * 11 9 7 13 13 H 1.48494 * 109.47177 * 209.99897 * 11 9 7 14 14 H 1.48500 * 109.46680 * 329.99812 * 11 9 7 15 15 C 1.34241 * 106.99739 * 180.02562 * 5 4 3 16 16 N 1.36828 * 109.93945 * 359.97438 * 15 5 4 17 17 C 1.46505 * 125.06277 * 180.02562 * 16 15 5 18 18 C 1.37696 * 109.87475 * 0.02562 * 16 15 5 19 19 C 1.39080 * 133.51056 * 180.02562 * 18 16 15 20 20 C 1.50705 * 120.10858 * 0.02562 * 19 18 16 21 21 C 1.37783 * 119.77957 * 179.97438 * 19 18 16 22 22 H 1.08999 * 109.47229 * 269.97758 * 1 2 3 23 23 H 1.08997 * 109.47262 * 29.99001 * 1 2 3 24 24 H 1.09007 * 109.46794 * 149.98182 * 1 2 3 25 25 H 1.08000 * 120.11159 * 0.03184 * 3 2 1 26 26 H 1.08999 * 109.47137 * 205.00014 * 6 5 4 27 27 H 1.08998 * 109.46703 * 324.99617 * 6 5 4 28 28 H 0.97003 * 119.99983 * 179.97438 * 10 9 7 29 29 H 1.08007 * 125.03031 * 180.02562 * 15 5 4 30 30 H 1.09002 * 109.46926 * 262.98241 * 17 16 15 31 31 H 1.08994 * 109.46911 * 22.98423 * 17 16 15 32 32 H 1.08999 * 109.47141 * 142.98812 * 17 16 15 33 33 H 1.08994 * 109.47360 * 277.03423 * 20 19 18 34 34 H 1.08995 * 109.46803 * 37.03598 * 20 19 18 35 35 H 1.09000 * 109.46499 * 157.03394 * 20 19 18 36 36 H 1.08001 * 119.66799 * 179.72158 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.1866 0.0000 4 6 3.5807 1.1874 0.0005 5 6 4.5985 2.2410 0.0012 6 6 4.3501 3.7274 0.0020 7 6 4.1449 4.2017 1.4175 8 1 4.1903 3.4974 2.2349 9 6 3.8992 5.5348 1.6691 10 7 3.7197 5.9487 2.9045 11 14 3.8200 6.7531 0.2552 12 1 2.4234 6.8453 -0.2410 13 1 4.2670 8.0883 0.7267 14 1 4.7066 6.2939 -0.8440 15 6 5.7944 1.6313 0.0009 16 7 5.6260 0.2735 0.0008 17 6 6.7124 -0.7094 0.0010 18 6 4.2833 -0.0317 0.0003 19 6 3.5731 -1.2275 0.0005 20 6 4.3079 -2.5432 0.0018 21 6 2.1954 -1.2052 0.0004 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8899 -0.5142 25 1 1.6424 2.1205 0.0005 26 1 5.2088 4.2395 -0.4320 27 1 3.4600 3.9472 -0.5875 28 1 3.5472 6.8867 3.0815 29 1 6.7484 2.1377 0.0017 30 1 6.8979 -1.0461 -1.0190 31 1 7.6164 -0.2516 0.4026 32 1 6.4312 -1.5617 0.6195 33 1 4.5958 -2.7997 -1.0177 34 1 5.2008 -2.4600 0.6214 35 1 3.6586 -3.3215 0.4027 36 1 1.6457 -2.1348 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:56 Heat of formation + Delta-G solvation = 30.248291 kcal Electronic energy + Delta-G solvation = -17043.868784 eV Core-core repulsion = 14492.237969 eV Total energy + Delta-G solvation = -2551.630815 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.20453 -38.41985 -35.84599 -34.53996 -33.27949 -31.72117 -29.85003 -28.13403 -27.83115 -25.81504 -23.97654 -22.76426 -21.50482 -19.71060 -18.92627 -17.57048 -17.11393 -16.35229 -16.13920 -15.86947 -15.00190 -14.85068 -14.51082 -14.30762 -14.21803 -14.05819 -13.83192 -13.61793 -13.28543 -13.17211 -12.98344 -12.58233 -12.38508 -12.27954 -12.00803 -11.81869 -11.65067 -11.45975 -11.37385 -10.76518 -10.07510 -8.87709 -8.28420 -8.14540 -6.30749 0.29288 0.76718 1.36075 1.37591 1.50344 1.90409 2.08081 2.36931 2.99504 3.06625 3.84426 3.93254 4.01435 4.10192 4.18108 4.37919 4.51779 4.56786 4.62284 4.69256 4.76082 4.82821 4.86640 4.91423 4.94975 5.06235 5.11884 5.16839 5.26755 5.33672 5.50735 5.60474 5.73012 5.87119 5.99637 6.06319 6.33602 6.42917 6.61730 6.75581 7.32033 8.90012 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.007338 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.681100 B = 3815.046493 C = 4657.019601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.131 4.131 5 C -0.167 4.167 6 C 0.061 3.939 7 C -0.511 4.511 8 H 0.019 0.981 9 C 0.005 3.995 10 N -0.953 5.953 11 Si 0.951 3.049 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.244 1.244 15 C 0.033 3.967 16 N -0.488 5.488 17 C 0.068 3.932 18 C 0.077 3.923 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.109 4.109 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.032 0.968 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.184 0.816 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -17.645 -9.414 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.136 4.136 5 C -0.174 4.174 6 C 0.023 3.977 7 C -0.550 4.550 8 H 0.037 0.963 9 C -0.191 4.191 10 N -0.594 5.594 11 Si 0.774 3.226 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.168 1.168 15 C -0.091 4.091 16 N -0.172 5.172 17 C -0.071 4.071 18 C -0.030 4.030 19 C -0.104 4.104 20 C -0.165 4.165 21 C -0.128 4.128 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.201 0.799 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.041 -17.731 -9.316 20.133 hybrid contribution -0.120 1.392 0.151 1.405 sum 1.921 -16.339 -9.165 18.832 Atomic orbital electron populations 1.20713 0.89425 1.03243 1.02439 1.19665 0.97369 0.92277 1.03150 1.20266 0.92247 0.98106 1.01316 1.19489 0.93930 0.93223 1.06948 1.20666 0.92361 0.95061 1.09265 1.17884 0.96315 0.88725 0.94806 1.21214 1.48007 0.93315 0.92415 0.96261 1.25991 0.94195 1.00395 0.98502 1.70078 1.51067 1.16637 1.21612 0.85641 0.79606 0.77625 0.79701 1.19418 1.20507 1.16773 1.21768 0.99217 0.82289 1.05857 1.43829 1.04414 1.05560 1.63365 1.22433 0.88536 0.91997 1.04148 1.18358 0.83927 0.94778 1.05897 1.19247 0.93703 0.92758 1.04694 1.20950 1.00280 0.92268 1.02955 1.20883 0.92343 0.97847 1.01755 0.91359 0.92254 0.89382 0.88413 0.94963 0.96722 0.92480 0.79909 0.89889 0.88546 0.88575 0.90267 0.90983 0.89590 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 9.99 71.23 0.71 -1.86 16 2 C -0.12 -4.09 5.85 -20.10 -0.12 -4.21 16 3 C -0.10 -4.24 9.67 22.23 0.22 -4.03 16 4 C -0.13 -5.85 6.35 -20.20 -0.13 -5.97 16 5 C -0.17 -7.84 5.51 -18.62 -0.10 -7.94 16 6 C 0.06 3.15 4.57 29.10 0.13 3.28 16 7 C -0.51 -31.64 9.65 25.60 0.25 -31.40 16 8 H 0.02 1.34 7.98 -2.91 -0.02 1.32 16 9 C 0.01 0.33 5.47 84.65 0.46 0.79 16 10 N -0.95 -62.08 13.96 21.44 0.30 -61.78 16 11 Si 0.95 45.94 27.47 68.60 1.88 47.82 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.24 -10.90 6.54 99.48 0.65 -10.25 16 15 C 0.03 1.26 11.19 83.00 0.93 2.19 16 16 N -0.49 -15.96 3.18 -539.27 -1.71 -17.68 16 17 C 0.07 1.36 10.32 127.77 1.32 2.68 16 18 C 0.08 2.83 6.74 39.03 0.26 3.09 16 19 C -0.10 -2.97 5.89 -19.77 -0.12 -3.09 16 20 C -0.11 -2.03 9.30 71.24 0.66 -1.37 16 21 C -0.11 -3.10 9.29 22.30 0.21 -2.89 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 24 H 0.09 1.68 8.08 -2.38 -0.02 1.66 16 25 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 26 H 0.03 1.58 7.20 -2.39 -0.02 1.56 16 27 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 28 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.18 5.95 8.06 -2.91 -0.02 5.93 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.59 8.11 -2.39 -0.02 1.57 16 32 H 0.10 1.60 5.17 -2.39 -0.01 1.59 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.24 5.08 -2.39 -0.01 1.23 16 35 H 0.09 1.27 8.03 -2.39 -0.02 1.25 16 36 H 0.15 3.11 8.05 -2.91 -0.02 3.09 16 Total: -1.00 -77.70 297.35 6.16 -71.54 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.01 Total: 10.82 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 4.68 Total: -50.73 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.41 Total: -79.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.82 kcal Total: -77.70 6.16 -71.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.789 kcal (2) G-P(sol) polarization free energy of solvation -77.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds