Wall clock time and date at job start Mon Mar 30 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38901 * 125.35475 * 2 1 4 4 C 1.40896 * 126.93137 * 359.75780 * 3 2 1 5 5 H 1.08003 * 119.99653 * 324.53157 * 4 3 2 6 6 C 1.39738 * 119.99730 * 144.53231 * 4 3 2 7 7 N 1.31046 * 119.99588 * 153.47714 * 6 4 3 8 8 Si 1.86799 * 120.00039 * 333.48286 * 6 4 3 9 9 H 1.48503 * 109.47337 * 95.23067 * 8 6 4 10 10 H 1.48498 * 109.46917 * 215.22890 * 8 6 4 11 11 H 1.48500 * 109.47195 * 335.22928 * 8 6 4 12 12 C 1.47676 * 106.13496 * 179.73873 * 3 2 1 13 13 C 1.39180 * 133.77720 * 180.02562 * 12 3 2 14 14 C 1.37878 * 119.69379 * 180.02562 * 13 12 3 15 15 C 1.50702 * 119.87471 * 179.97438 * 14 13 12 16 16 C 1.38672 * 120.25103 * 359.96114 * 14 13 12 17 17 C 1.37860 * 120.62591 * 0.02562 * 16 14 13 18 18 C 1.50704 * 120.01662 * 180.02562 * 17 16 14 19 19 C 1.39122 * 119.96798 * 359.97438 * 17 16 14 20 20 N 1.35633 * 125.35704 * 179.69636 * 2 1 3 21 21 C 1.46496 * 124.69335 * 0.25980 * 20 2 1 22 22 H 1.08996 * 109.47229 * 86.39770 * 1 2 3 23 23 H 1.09001 * 109.46829 * 206.40138 * 1 2 3 24 24 H 1.09007 * 109.47067 * 326.39660 * 1 2 3 25 25 H 0.97005 * 120.00130 * 179.97438 * 7 6 4 26 26 H 1.08007 * 120.15614 * 359.97438 * 13 12 3 27 27 H 1.09006 * 109.47237 * 269.99923 * 15 14 13 28 28 H 1.08993 * 109.47380 * 29.99982 * 15 14 13 29 29 H 1.09000 * 109.47222 * 150.00493 * 15 14 13 30 30 H 1.08004 * 119.68373 * 179.97438 * 16 14 13 31 31 H 1.08996 * 109.46478 * 263.86395 * 18 17 16 32 32 H 1.08992 * 109.46891 * 23.86209 * 18 17 16 33 33 H 1.08996 * 109.47005 * 143.86153 * 18 17 16 34 34 H 1.09002 * 109.47240 * 97.80786 * 21 20 2 35 35 H 1.09002 * 109.47686 * 217.81123 * 21 20 2 36 36 H 1.09000 * 109.47096 * 337.81375 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3108 1.1329 0.0000 4 6 1.8821 2.4750 -0.0048 5 1 0.9940 2.7562 -0.5513 6 6 2.6060 3.4421 0.6976 7 7 2.5665 4.6953 0.3162 8 14 3.6301 2.9487 2.1799 9 1 5.0354 2.7211 1.7571 10 1 3.5876 4.0327 3.1939 11 1 3.0815 1.6999 2.7670 12 6 3.7052 0.6467 0.0065 13 6 4.9453 1.2787 0.0099 14 6 6.0977 0.5216 0.0155 15 6 7.4425 1.2016 0.0186 16 6 6.0238 -0.8631 0.0185 17 6 4.8018 -1.5013 0.0155 18 6 4.7376 -3.0069 0.0195 19 6 3.6279 -0.7546 0.0098 20 7 2.2919 -1.1062 0.0059 21 6 1.7921 -2.4832 0.0077 22 1 -0.3633 0.0646 -1.0256 23 1 -0.3633 -0.9205 0.4570 24 1 -0.3633 0.8560 0.5688 25 1 3.0687 5.3667 0.8040 26 1 5.0047 2.3571 0.0073 27 1 7.7703 1.3633 -1.0084 28 1 7.3635 2.1609 0.5300 29 1 8.1666 0.5724 0.5362 30 1 6.9323 -1.4472 0.0225 31 1 4.6164 -3.3680 -1.0018 32 1 5.6593 -3.4088 0.4399 33 1 3.8905 -3.3328 0.6231 34 1 1.8031 -2.8751 -1.0094 35 1 2.4289 -3.1001 0.6417 36 1 0.7722 -2.4990 0.3920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:59 Heat of formation + Delta-G solvation = 49.253726 kcal Electronic energy + Delta-G solvation = -17719.955883 eV Core-core repulsion = 15169.149206 eV Total energy + Delta-G solvation = -2550.806677 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23930 -36.73352 -34.04269 -32.58818 -31.51181 -30.25566 -27.71345 -27.58896 -26.29908 -24.37049 -23.15233 -20.10529 -20.00913 -18.47877 -16.91726 -15.63096 -15.04921 -14.81540 -14.45932 -14.19211 -13.37230 -13.20906 -12.90216 -12.81472 -12.73630 -12.57073 -12.26184 -11.92214 -11.73769 -11.61225 -11.35625 -11.12617 -10.94549 -10.72267 -10.61517 -10.33561 -9.93802 -9.73177 -9.39208 -8.96245 -8.09985 -6.95854 -6.64704 -6.51912 -3.98477 2.04268 2.48347 3.17117 3.34411 3.47181 3.82079 3.88597 4.24626 4.64081 5.22817 5.28186 5.39423 5.48822 5.64918 5.68742 5.74762 5.80627 5.85854 5.96948 6.04503 6.08275 6.15132 6.27032 6.32703 6.37061 6.47647 6.66298 6.71055 6.79772 6.95954 7.09061 7.32978 7.42235 7.54402 7.74988 8.04042 8.33861 8.52142 8.62017 8.95803 9.15786 10.40663 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.013383 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.003729 B = 2091.676497 C = 3341.800334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.105 4.105 3 C 0.040 3.960 4 C -0.451 4.451 5 H 0.085 0.915 6 C 0.096 3.904 7 N -0.825 5.825 8 Si 0.874 3.126 9 H -0.249 1.249 10 H -0.292 1.292 11 H -0.257 1.257 12 C -0.129 4.129 13 C -0.054 4.054 14 C -0.159 4.159 15 C -0.096 4.096 16 C -0.102 4.102 17 C -0.126 4.126 18 C -0.108 4.108 19 C 0.105 3.895 20 N -0.471 5.471 21 C 0.078 3.922 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.277 0.723 26 H 0.118 0.882 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -10.657 0.882 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.207 4.207 3 C 0.034 3.966 4 C -0.482 4.482 5 H 0.103 0.897 6 C -0.119 4.119 7 N -0.453 5.453 8 Si 0.700 3.300 9 H -0.174 1.174 10 H -0.219 1.219 11 H -0.181 1.181 12 C -0.135 4.135 13 C -0.073 4.073 14 C -0.161 4.161 15 C -0.153 4.153 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.164 4.164 19 C -0.004 4.004 20 N -0.156 5.156 21 C -0.064 4.064 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.396 -10.670 0.889 11.232 hybrid contribution 0.432 -0.149 0.629 0.778 sum 3.828 -10.819 1.518 11.576 Atomic orbital electron populations 1.19846 0.89603 1.00701 1.00350 1.20353 0.92071 0.84567 1.23723 1.17965 0.87209 0.92318 0.99107 1.18304 1.11568 0.88785 1.29536 0.89663 1.25751 0.94451 0.94197 0.97549 1.69889 1.36417 1.02779 1.36177 0.87042 0.82040 0.79090 0.81865 1.17362 1.21923 1.18116 1.19472 0.94433 0.91843 1.07759 1.20510 0.90511 0.99218 0.97024 1.19312 0.94481 0.93336 1.08977 1.20550 0.94016 0.99721 1.00999 1.20226 0.95175 0.93462 1.03288 1.18611 0.90821 0.94081 1.09430 1.20843 1.01709 0.92744 1.01103 1.17891 0.83710 0.93773 1.05050 1.42841 1.03311 1.04653 1.64746 1.21928 1.00259 0.82812 1.01416 0.93697 0.94247 0.91067 0.91298 0.86459 0.92498 0.92558 0.92789 0.87361 0.92508 0.92404 0.92044 0.92975 0.90854 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.92 9.85 36.01 0.35 -0.56 16 2 C -0.10 -2.44 6.96 -80.66 -0.56 -3.00 16 3 C 0.04 1.06 5.05 -104.79 -0.53 0.53 16 4 C -0.45 -12.65 9.38 -38.02 -0.36 -13.01 16 5 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 6 C 0.10 2.63 5.13 -17.33 -0.09 2.55 16 7 N -0.83 -23.07 13.94 55.54 0.77 -22.30 16 8 Si 0.87 21.56 24.41 -169.99 -4.15 17.42 16 9 H -0.25 -5.85 5.21 56.52 0.29 -5.56 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 12 C -0.13 -3.24 5.07 -104.90 -0.53 -3.77 16 13 C -0.05 -1.29 6.76 -39.36 -0.27 -1.55 16 14 C -0.16 -3.24 5.88 -104.59 -0.62 -3.85 16 15 C -0.10 -1.58 10.01 36.01 0.36 -1.22 16 16 C -0.10 -1.92 9.29 -39.56 -0.37 -2.29 16 17 C -0.13 -2.45 5.90 -104.43 -0.62 -3.06 16 18 C -0.11 -1.58 9.27 36.01 0.33 -1.25 16 19 C 0.10 2.37 6.72 -83.90 -0.56 1.80 16 20 N -0.47 -9.95 3.15 -116.18 -0.37 -10.32 16 21 C 0.08 1.20 10.05 59.84 0.60 1.81 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 24 H 0.07 1.41 8.00 -51.92 -0.42 1.00 16 25 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 26 H 0.12 2.87 5.66 -52.48 -0.30 2.58 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.11 1.69 8.05 -52.48 -0.42 1.27 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 33 H 0.06 0.85 4.90 -51.93 -0.25 0.59 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.00 5.09 -51.93 -0.26 0.74 16 36 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 LS Contribution 284.28 15.07 4.28 4.28 Total: -1.00 -30.38 284.28 -7.25 -37.63 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.95 Total: 0.18 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.85 Total: -26.89 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.41 Total: -32.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.38 -7.25 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.884 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds