Wall clock time and date at job start Mon Mar 30 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38901 * 125.35475 * 2 1 4 4 C 1.40896 * 126.93137 * 359.75780 * 3 2 1 5 5 H 1.08003 * 119.99653 * 324.53157 * 4 3 2 6 6 C 1.39738 * 119.99730 * 144.53231 * 4 3 2 7 7 N 1.31046 * 119.99588 * 153.47714 * 6 4 3 8 8 Si 1.86799 * 120.00039 * 333.48286 * 6 4 3 9 9 H 1.48503 * 109.47337 * 95.23067 * 8 6 4 10 10 H 1.48498 * 109.46917 * 215.22890 * 8 6 4 11 11 H 1.48500 * 109.47195 * 335.22928 * 8 6 4 12 12 C 1.47676 * 106.13496 * 179.73873 * 3 2 1 13 13 C 1.39180 * 133.77720 * 180.02562 * 12 3 2 14 14 C 1.37878 * 119.69379 * 180.02562 * 13 12 3 15 15 C 1.50702 * 119.87471 * 179.97438 * 14 13 12 16 16 C 1.38672 * 120.25103 * 359.96114 * 14 13 12 17 17 C 1.37860 * 120.62591 * 0.02562 * 16 14 13 18 18 C 1.50704 * 120.01662 * 180.02562 * 17 16 14 19 19 C 1.39122 * 119.96798 * 359.97438 * 17 16 14 20 20 N 1.35633 * 125.35704 * 179.69636 * 2 1 3 21 21 C 1.46496 * 124.69335 * 0.25980 * 20 2 1 22 22 H 1.08996 * 109.47229 * 86.39770 * 1 2 3 23 23 H 1.09001 * 109.46829 * 206.40138 * 1 2 3 24 24 H 1.09007 * 109.47067 * 326.39660 * 1 2 3 25 25 H 0.97005 * 120.00130 * 179.97438 * 7 6 4 26 26 H 1.08007 * 120.15614 * 359.97438 * 13 12 3 27 27 H 1.09006 * 109.47237 * 269.99923 * 15 14 13 28 28 H 1.08993 * 109.47380 * 29.99982 * 15 14 13 29 29 H 1.09000 * 109.47222 * 150.00493 * 15 14 13 30 30 H 1.08004 * 119.68373 * 179.97438 * 16 14 13 31 31 H 1.08996 * 109.46478 * 263.86395 * 18 17 16 32 32 H 1.08992 * 109.46891 * 23.86209 * 18 17 16 33 33 H 1.08996 * 109.47005 * 143.86153 * 18 17 16 34 34 H 1.09002 * 109.47240 * 97.80786 * 21 20 2 35 35 H 1.09002 * 109.47686 * 217.81123 * 21 20 2 36 36 H 1.09000 * 109.47096 * 337.81375 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3108 1.1329 0.0000 4 6 1.8821 2.4750 -0.0048 5 1 0.9940 2.7562 -0.5513 6 6 2.6060 3.4421 0.6976 7 7 2.5665 4.6953 0.3162 8 14 3.6301 2.9487 2.1799 9 1 5.0354 2.7211 1.7571 10 1 3.5876 4.0327 3.1939 11 1 3.0815 1.6999 2.7670 12 6 3.7052 0.6467 0.0065 13 6 4.9453 1.2787 0.0099 14 6 6.0977 0.5216 0.0155 15 6 7.4425 1.2016 0.0186 16 6 6.0238 -0.8631 0.0185 17 6 4.8018 -1.5013 0.0155 18 6 4.7376 -3.0069 0.0195 19 6 3.6279 -0.7546 0.0098 20 7 2.2919 -1.1062 0.0059 21 6 1.7921 -2.4832 0.0077 22 1 -0.3633 0.0646 -1.0256 23 1 -0.3633 -0.9205 0.4570 24 1 -0.3633 0.8560 0.5688 25 1 3.0687 5.3667 0.8040 26 1 5.0047 2.3571 0.0073 27 1 7.7703 1.3633 -1.0084 28 1 7.3635 2.1609 0.5300 29 1 8.1666 0.5724 0.5362 30 1 6.9323 -1.4472 0.0225 31 1 4.6164 -3.3680 -1.0018 32 1 5.6593 -3.4088 0.4399 33 1 3.8905 -3.3328 0.6231 34 1 1.8031 -2.8751 -1.0094 35 1 2.4289 -3.1001 0.6417 36 1 0.7722 -2.4990 0.3920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:59 Heat of formation + Delta-G solvation = 31.491437 kcal Electronic energy + Delta-G solvation = -17720.726114 eV Core-core repulsion = 15169.149206 eV Total energy + Delta-G solvation = -2551.576908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89922 -38.31704 -35.82118 -34.28398 -33.07013 -31.89217 -29.34532 -29.08510 -27.73347 -25.93854 -24.82771 -21.78602 -21.55731 -20.23550 -18.79464 -17.33705 -16.59992 -16.51365 -16.15672 -15.76723 -14.90569 -14.65638 -14.50758 -14.40056 -14.18769 -13.86749 -13.68415 -13.47548 -13.40421 -13.10659 -12.86263 -12.74505 -12.54891 -12.51561 -12.14018 -12.04161 -11.70576 -11.33042 -11.10020 -10.89909 -9.85314 -8.69959 -8.60740 -8.27729 -6.01615 0.38351 0.86699 1.21858 1.32389 1.45800 1.95555 2.25052 2.33867 2.91952 3.32854 3.95866 4.04647 4.15900 4.23105 4.31047 4.37743 4.56488 4.56819 4.63098 4.69569 4.77428 4.86943 4.89636 4.91296 4.97750 5.10697 5.11834 5.21258 5.22667 5.36015 5.43415 5.56742 5.76378 5.90772 6.04543 6.30123 6.36899 6.65709 6.87403 7.01203 7.17050 8.42903 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.013383 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.003729 B = 2091.676497 C = 3341.800334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.076 4.076 3 C -0.023 4.023 4 C -0.474 4.474 5 H 0.049 0.951 6 C 0.060 3.940 7 N -0.873 5.873 8 Si 0.928 3.072 9 H -0.236 1.236 10 H -0.284 1.284 11 H -0.279 1.279 12 C -0.161 4.161 13 C -0.098 4.098 14 C -0.149 4.149 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.105 4.105 19 C 0.080 3.920 20 N -0.474 5.474 21 C 0.068 3.932 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.281 0.719 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -15.076 1.311 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.181 4.181 3 C -0.029 4.029 4 C -0.507 4.507 5 H 0.067 0.933 6 C -0.150 4.150 7 N -0.504 5.504 8 Si 0.753 3.247 9 H -0.160 1.160 10 H -0.211 1.211 11 H -0.205 1.205 12 C -0.167 4.167 13 C -0.117 4.117 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.161 4.161 19 C -0.029 4.029 20 N -0.158 5.158 21 C -0.072 4.072 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.170 0.830 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.119 -15.131 1.314 16.028 hybrid contribution -0.114 0.915 0.397 1.003 sum 5.005 -14.217 1.711 15.169 Atomic orbital electron populations 1.19960 0.87102 1.02214 1.01385 1.20989 0.93825 0.84984 1.18292 1.18179 0.89229 0.92461 1.03061 1.18240 1.11197 0.90649 1.30586 0.93284 1.26236 0.95546 0.94059 0.99122 1.69928 1.38991 1.03576 1.37861 0.86221 0.81547 0.77572 0.79362 1.16005 1.21057 1.20471 1.19689 0.94175 0.93761 1.09054 1.20509 0.91755 0.98424 1.00978 1.19850 0.94923 0.94484 1.05819 1.20644 0.92615 0.99677 1.02408 1.20746 0.96790 0.92953 1.02218 1.19244 0.89633 0.96844 1.06033 1.20932 1.03761 0.88817 1.02624 1.18282 0.85328 0.93135 1.06140 1.43160 1.02726 1.06250 1.63628 1.22340 1.01706 0.79721 1.03405 0.92393 0.90221 0.92379 0.90877 0.89012 0.90919 0.93385 0.89514 0.82983 0.90851 0.89636 0.90965 0.90985 0.88536 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.85 9.85 71.24 0.70 -1.15 16 2 C -0.08 -3.51 6.96 42.13 0.29 -3.22 16 3 C -0.02 -1.26 5.05 -19.97 -0.10 -1.37 16 4 C -0.47 -28.70 9.38 23.28 0.22 -28.48 16 5 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 6 C 0.06 3.56 5.13 85.17 0.44 3.99 16 7 N -0.87 -52.45 13.94 21.80 0.30 -52.15 16 8 Si 0.93 47.35 24.41 68.60 1.67 49.02 16 9 H -0.24 -11.37 5.21 99.48 0.52 -10.85 16 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.28 -14.99 7.11 99.48 0.71 -14.29 16 12 C -0.16 -8.24 5.07 -20.04 -0.10 -8.34 16 13 C -0.10 -4.74 6.76 22.41 0.15 -4.59 16 14 C -0.15 -5.78 5.88 -19.85 -0.12 -5.90 16 15 C -0.10 -2.92 10.01 71.24 0.71 -2.21 16 16 C -0.11 -3.62 9.29 22.28 0.21 -3.41 16 17 C -0.11 -3.99 5.90 -19.74 -0.12 -4.11 16 18 C -0.11 -2.46 9.27 71.24 0.66 -1.80 16 19 C 0.08 3.46 6.72 38.87 0.26 3.72 16 20 N -0.47 -18.92 3.15 -521.48 -1.64 -20.56 16 21 C 0.07 1.78 10.05 127.77 1.28 3.07 16 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.08 2.32 6.66 -2.39 -0.02 2.31 16 24 H 0.06 2.35 8.00 -2.38 -0.02 2.33 16 25 H 0.28 15.46 8.30 -92.70 -0.77 14.69 16 26 H 0.09 4.77 5.66 -2.91 -0.02 4.75 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 29 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 30 H 0.15 3.75 8.05 -2.91 -0.02 3.73 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.07 1.55 4.90 -2.39 -0.01 1.54 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 2.10 5.09 -2.39 -0.01 2.08 16 36 H 0.09 2.06 6.55 -2.39 -0.02 2.04 16 Total: -1.00 -72.47 284.28 5.72 -66.76 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.89 Total: 10.71 kcal Atomic # 6 Polarization: -58.27 SS G_CDS: 4.49 Total: -53.78 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.34 Total: -72.71 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -72.47 5.72 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.248 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds