Wall clock time and date at job start Mon Mar 30 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37791 * 119.66290 * 2 1 4 4 C 1.39081 * 119.77905 * 179.97438 * 3 2 1 5 5 C 1.40702 * 119.33019 * 0.02562 * 4 3 2 6 6 C 1.46495 * 106.03726 * 179.97438 * 5 4 3 7 7 C 1.50694 * 126.50145 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46967 * 85.02429 * 7 6 5 9 9 H 1.07996 * 119.99436 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00087 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99812 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99738 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47162 * 90.00158 * 12 10 8 14 14 H 1.48503 * 109.46845 * 209.99777 * 12 10 8 15 15 H 1.48494 * 109.47306 * 329.99578 * 12 10 8 16 16 C 1.34236 * 106.99751 * 0.02562 * 6 5 4 17 17 N 1.36834 * 109.93840 * 359.97438 * 16 6 5 18 18 C 1.46502 * 125.06490 * 179.97438 * 17 16 6 19 19 C 1.39592 * 119.93022 * 0.02562 * 5 4 3 20 20 C 1.50706 * 120.11562 * 179.97438 * 19 5 4 21 21 C 1.36662 * 119.76492 * 359.72313 * 19 5 4 22 22 H 1.08999 * 109.47015 * 90.00360 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99513 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00230 * 1 2 3 25 25 H 1.08007 * 120.11203 * 0.02562 * 3 2 1 26 26 H 1.08994 * 109.47443 * 205.02074 * 7 6 5 27 27 H 1.08998 * 109.47551 * 325.02381 * 7 6 5 28 28 H 0.97003 * 119.99753 * 180.02562 * 11 10 8 29 29 H 1.07996 * 125.02840 * 179.97438 * 16 6 5 30 30 H 1.08994 * 109.46851 * 270.00234 * 18 17 16 31 31 H 1.09004 * 109.46419 * 29.99918 * 18 17 16 32 32 H 1.08997 * 109.46917 * 149.99562 * 18 17 16 33 33 H 1.09000 * 109.47457 * 89.99780 * 20 19 5 34 34 H 1.08997 * 109.46997 * 209.99720 * 20 19 5 35 35 H 1.08997 * 109.47245 * 329.99261 * 20 19 5 36 36 H 1.08002 * 119.73749 * 180.30002 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.2002 0.0005 5 6 4.2715 -0.0251 0.0005 6 6 5.6965 0.3146 0.0005 7 6 6.8494 -0.6558 0.0011 8 6 7.1545 -1.0742 -1.4143 9 1 6.5715 -0.6773 -2.2321 10 6 8.1771 -1.9644 -1.6648 11 7 8.8867 -2.4480 -0.6687 12 14 8.5556 -2.4823 -3.4192 13 1 9.5548 -1.5530 -4.0050 14 1 9.1032 -3.8627 -3.4205 15 1 7.3100 -2.4432 -4.2266 16 6 5.7805 1.6544 0.0011 17 7 4.5259 2.2006 0.0009 18 6 4.2329 3.6360 0.0019 19 6 3.5604 -1.2263 -0.0006 20 6 4.2971 -2.5411 -0.0012 21 6 2.1940 -1.2059 0.0041 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6453 2.1306 0.0004 26 1 7.7270 -0.1773 0.4356 27 1 6.5851 -1.5338 0.5905 28 1 9.6064 -3.0740 -0.8449 29 1 6.7019 2.2177 0.0017 30 1 4.1598 3.9911 1.0298 31 1 5.0326 4.1703 -0.5111 32 1 3.2886 3.8143 -0.5123 33 1 4.4743 -2.8588 1.0263 34 1 3.6984 -3.2927 -0.5157 35 1 5.2512 -2.4228 -0.5146 36 1 1.6443 -2.1355 0.0082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:21 Heat of formation + Delta-G solvation = 40.706041 kcal Electronic energy + Delta-G solvation = -17143.737234 eV Core-core repulsion = 14592.559901 eV Total energy + Delta-G solvation = -2551.177333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70776 -37.10827 -34.16130 -32.63125 -31.33085 -30.29600 -28.23410 -26.62640 -25.51029 -24.99009 -22.68382 -20.75338 -20.16329 -18.22408 -16.30598 -16.00868 -15.71289 -14.84285 -14.65456 -14.34839 -13.66483 -13.47362 -13.08210 -12.71002 -12.46550 -12.29201 -12.22463 -11.89887 -11.85393 -11.65311 -11.42730 -11.25956 -10.82216 -10.70933 -10.41321 -10.22808 -9.81036 -9.58817 -9.36164 -8.47725 -8.33783 -7.46788 -6.70013 -5.94449 -3.98342 1.72209 2.19864 3.34278 3.38189 3.40596 3.44166 3.54375 4.42963 4.54821 5.02374 5.12334 5.28942 5.36909 5.37523 5.50591 5.56851 5.59621 5.65531 5.77640 5.95916 5.97114 6.05437 6.27716 6.40023 6.42502 6.49032 6.69408 6.86959 7.01280 7.09483 7.33320 7.46284 7.59857 7.65994 7.79644 7.98360 8.02753 8.08182 8.46900 9.07571 9.64717 11.13124 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.007317 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.851702 B = 3825.709557 C = 4511.133528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.071 4.071 3 C -0.151 4.151 4 C 0.101 3.899 5 C -0.106 4.106 6 C -0.102 4.102 7 C 0.078 3.922 8 C -0.502 4.502 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.889 3.111 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.003 3.997 17 N -0.497 5.497 18 C 0.087 3.913 19 C -0.008 4.008 20 C -0.131 4.131 21 C -0.171 4.171 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.260 0.740 29 H 0.160 0.840 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 7.438 2.162 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.072 4.072 3 C -0.172 4.172 4 C -0.005 4.005 5 C -0.111 4.111 6 C -0.108 4.108 7 C 0.040 3.960 8 C -0.541 4.541 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.717 3.283 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.118 4.118 17 N -0.182 5.182 18 C -0.055 4.055 19 C -0.008 4.008 20 C -0.187 4.187 21 C -0.190 4.190 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.125 0.875 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.177 0.823 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.208 7.679 2.200 14.589 hybrid contribution 0.295 -0.069 -1.019 1.063 sum -11.912 7.610 1.181 14.185 Atomic orbital electron populations 1.20687 0.91841 1.01969 1.01646 1.19352 0.94961 0.92421 1.00501 1.19584 0.89917 0.97330 1.10389 1.18204 0.90488 0.87995 1.03845 1.19127 0.93490 0.91430 1.07084 1.21213 0.93342 0.93397 1.02806 1.17815 0.88815 0.92128 0.97213 1.21101 1.15375 1.25251 0.92358 0.92700 1.24985 0.96181 0.96314 0.96792 1.69958 1.21165 1.31731 1.30601 0.86639 0.78576 0.77801 0.85331 1.20778 1.21237 1.19857 1.21500 0.86468 0.93915 1.09886 1.43613 1.04901 1.04468 1.65230 1.21733 1.02294 0.79532 1.01932 1.19182 0.92685 0.94277 0.94673 1.21077 1.02847 0.92617 1.02178 1.20269 0.93383 0.96780 1.08566 0.91793 0.91905 0.92296 0.87508 0.95852 0.94865 0.92995 0.82314 0.92262 0.90507 0.91037 0.91846 0.92849 0.87357 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.00 36.01 0.36 -0.86 16 2 C -0.07 -1.13 5.88 -104.58 -0.61 -1.74 16 3 C -0.15 -2.51 9.60 -39.43 -0.38 -2.89 16 4 C 0.10 1.95 6.81 -83.99 -0.57 1.38 16 5 C -0.11 -2.31 6.14 -105.14 -0.65 -2.95 16 6 C -0.10 -2.33 5.50 -102.71 -0.56 -2.89 16 7 C 0.08 2.01 4.59 -29.03 -0.13 1.88 16 8 C -0.50 -14.01 7.94 -34.44 -0.27 -14.28 16 9 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 12 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.00 0.06 11.20 -16.73 -0.19 -0.13 16 17 N -0.50 -8.76 3.18 -121.81 -0.39 -9.15 16 18 C 0.09 1.06 11.03 59.85 0.66 1.72 16 19 C -0.01 -0.15 5.87 -104.68 -0.61 -0.77 16 20 C -0.13 -2.60 9.19 36.01 0.33 -2.27 16 21 C -0.17 -2.95 9.26 -39.95 -0.37 -3.32 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.90 6.60 -51.93 -0.34 0.56 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.16 2.79 8.06 -52.49 -0.42 2.36 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.11 2.53 4.96 -51.93 -0.26 2.28 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -31.05 300.61 -8.45 -39.50 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.20 Total: -0.44 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -3.10 Total: -25.58 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.35 Total: -34.60 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.05 -8.45 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.203 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds