Wall clock time and date at job start Mon Mar 30 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37791 * 119.66290 * 2 1 4 4 C 1.39081 * 119.77905 * 179.97438 * 3 2 1 5 5 C 1.40702 * 119.33019 * 0.02562 * 4 3 2 6 6 C 1.46495 * 106.03726 * 179.97438 * 5 4 3 7 7 C 1.50694 * 126.50145 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46967 * 85.02429 * 7 6 5 9 9 H 1.07996 * 119.99436 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00087 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99812 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99738 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47162 * 90.00158 * 12 10 8 14 14 H 1.48503 * 109.46845 * 209.99777 * 12 10 8 15 15 H 1.48494 * 109.47306 * 329.99578 * 12 10 8 16 16 C 1.34236 * 106.99751 * 0.02562 * 6 5 4 17 17 N 1.36834 * 109.93840 * 359.97438 * 16 6 5 18 18 C 1.46502 * 125.06490 * 179.97438 * 17 16 6 19 19 C 1.39592 * 119.93022 * 0.02562 * 5 4 3 20 20 C 1.50706 * 120.11562 * 179.97438 * 19 5 4 21 21 C 1.36662 * 119.76492 * 359.72313 * 19 5 4 22 22 H 1.08999 * 109.47015 * 90.00360 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99513 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00230 * 1 2 3 25 25 H 1.08007 * 120.11203 * 0.02562 * 3 2 1 26 26 H 1.08994 * 109.47443 * 205.02074 * 7 6 5 27 27 H 1.08998 * 109.47551 * 325.02381 * 7 6 5 28 28 H 0.97003 * 119.99753 * 180.02562 * 11 10 8 29 29 H 1.07996 * 125.02840 * 179.97438 * 16 6 5 30 30 H 1.08994 * 109.46851 * 270.00234 * 18 17 16 31 31 H 1.09004 * 109.46419 * 29.99918 * 18 17 16 32 32 H 1.08997 * 109.46917 * 149.99562 * 18 17 16 33 33 H 1.09000 * 109.47457 * 89.99780 * 20 19 5 34 34 H 1.08997 * 109.46997 * 209.99720 * 20 19 5 35 35 H 1.08997 * 109.47245 * 329.99261 * 20 19 5 36 36 H 1.08002 * 119.73749 * 180.30002 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.1973 0.0000 4 6 3.5798 1.2002 0.0005 5 6 4.2715 -0.0251 0.0005 6 6 5.6965 0.3146 0.0005 7 6 6.8494 -0.6558 0.0011 8 6 7.1545 -1.0742 -1.4143 9 1 6.5715 -0.6773 -2.2321 10 6 8.1771 -1.9644 -1.6648 11 7 8.8867 -2.4480 -0.6687 12 14 8.5556 -2.4823 -3.4192 13 1 9.5548 -1.5530 -4.0050 14 1 9.1032 -3.8627 -3.4205 15 1 7.3100 -2.4432 -4.2266 16 6 5.7805 1.6544 0.0011 17 7 4.5259 2.2006 0.0009 18 6 4.2329 3.6360 0.0019 19 6 3.5604 -1.2263 -0.0006 20 6 4.2971 -2.5411 -0.0012 21 6 2.1940 -1.2059 0.0041 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6453 2.1306 0.0004 26 1 7.7270 -0.1773 0.4356 27 1 6.5851 -1.5338 0.5905 28 1 9.6064 -3.0740 -0.8449 29 1 6.7019 2.2177 0.0017 30 1 4.1598 3.9911 1.0298 31 1 5.0326 4.1703 -0.5111 32 1 3.2886 3.8143 -0.5123 33 1 4.4743 -2.8588 1.0263 34 1 3.6984 -3.2927 -0.5157 35 1 5.2512 -2.4228 -0.5146 36 1 1.6443 -2.1355 0.0082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:21 Heat of formation + Delta-G solvation = 24.663426 kcal Electronic energy + Delta-G solvation = -17144.432894 eV Core-core repulsion = 14592.559901 eV Total energy + Delta-G solvation = -2551.872993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12546 -38.43551 -35.89946 -34.39459 -32.80893 -31.66451 -29.92818 -27.95131 -26.84735 -26.54997 -24.54200 -22.22017 -21.48003 -19.73814 -18.41488 -17.50772 -17.06361 -16.44368 -16.10969 -15.87619 -14.99705 -14.60686 -14.37903 -14.34390 -14.05882 -13.87225 -13.74152 -13.24196 -13.12904 -12.98902 -12.95598 -12.67000 -12.61725 -12.52516 -11.99331 -11.67898 -11.58688 -11.35536 -11.32679 -10.52359 -10.00934 -8.86173 -8.31622 -7.98287 -6.23138 0.32248 0.81760 1.39372 1.40359 1.51625 1.96189 2.10234 2.45591 3.03937 3.17159 3.88107 4.01064 4.09389 4.12415 4.35744 4.50066 4.54310 4.55898 4.68670 4.71348 4.84705 4.89160 4.92149 4.96162 4.98334 5.14445 5.19439 5.33691 5.41366 5.51593 5.66886 5.81293 5.83331 5.91032 6.08892 6.14389 6.32523 6.48493 6.65950 6.88052 7.43729 8.96200 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.007317 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.851702 B = 3825.709557 C = 4511.133528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.069 4.069 3 C -0.148 4.148 4 C 0.089 3.911 5 C -0.144 4.144 6 C -0.156 4.156 7 C 0.094 3.906 8 C -0.509 4.509 9 H 0.043 0.957 10 C 0.009 3.991 11 N -0.929 5.929 12 Si 0.955 3.045 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.271 1.271 16 C 0.017 3.983 17 N -0.492 5.492 18 C 0.079 3.921 19 C -0.043 4.043 20 C -0.122 4.122 21 C -0.167 4.167 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.142 0.858 26 H -0.003 1.003 27 H 0.007 0.993 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 9.040 1.319 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.070 4.070 3 C -0.169 4.169 4 C -0.019 4.019 5 C -0.149 4.149 6 C -0.162 4.162 7 C 0.057 3.943 8 C -0.548 4.548 9 H 0.061 0.939 10 C -0.189 4.189 11 N -0.569 5.569 12 Si 0.780 3.220 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.196 1.196 16 C -0.106 4.106 17 N -0.176 5.176 18 C -0.062 4.062 19 C -0.043 4.043 20 C -0.179 4.179 21 C -0.186 4.186 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.160 0.840 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.945 9.314 1.359 17.663 hybrid contribution 1.047 -0.508 -0.705 1.361 sum -13.898 8.806 0.654 16.466 Atomic orbital electron populations 1.20757 0.88257 1.03694 1.03040 1.19894 0.97439 0.91440 0.98255 1.20020 0.88751 0.99195 1.08890 1.18541 0.91726 0.87435 1.04161 1.19369 0.93124 0.93411 1.09001 1.20973 0.93438 0.94372 1.07419 1.17430 0.89299 0.91875 0.95704 1.21261 1.15216 1.25345 0.92940 0.93911 1.25785 0.95945 0.96215 1.00950 1.70075 1.21741 1.32376 1.32742 0.85605 0.78428 0.77741 0.80256 1.19763 1.20425 1.19612 1.21664 0.88198 0.93220 1.07478 1.43875 1.03585 1.06460 1.63726 1.22130 1.04044 0.76160 1.03822 1.19360 0.94147 0.93663 0.97157 1.20911 1.01222 0.93967 1.01779 1.20596 0.92246 0.98762 1.06974 0.90356 0.90607 0.90288 0.84018 0.98462 0.97521 0.92757 0.80644 0.90325 0.88767 0.88956 0.92009 0.90690 0.91599 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.00 71.24 0.71 -1.15 16 2 C -0.07 -1.96 5.88 -19.84 -0.12 -2.08 16 3 C -0.15 -4.43 9.60 22.37 0.21 -4.22 16 4 C 0.09 3.30 6.81 39.03 0.27 3.56 16 5 C -0.14 -6.43 6.14 -20.20 -0.12 -6.56 16 6 C -0.16 -7.50 5.50 -18.63 -0.10 -7.60 16 7 C 0.09 5.27 4.59 29.10 0.13 5.41 16 8 C -0.51 -29.92 7.94 25.60 0.20 -29.72 16 9 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 10 C 0.01 0.51 5.46 84.65 0.46 0.98 16 11 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 12 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 16 C 0.02 0.70 11.20 83.00 0.93 1.63 16 17 N -0.49 -16.62 3.18 -539.28 -1.71 -18.34 16 18 C 0.08 1.64 11.03 127.77 1.41 3.04 16 19 C -0.04 -1.76 5.87 -19.90 -0.12 -1.88 16 20 C -0.12 -5.12 9.19 71.24 0.65 -4.47 16 21 C -0.17 -5.51 9.26 22.03 0.20 -5.31 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 24 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 25 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.01 0.39 6.60 -2.39 -0.02 0.38 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.18 6.19 8.06 -2.91 -0.02 6.17 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.56 8.10 -2.39 -0.02 1.55 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.66 8.08 -2.39 -0.02 2.64 16 35 H 0.07 3.32 4.96 -2.39 -0.01 3.31 16 36 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -71.15 300.61 6.38 -64.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.06 Total: 10.78 kcal Atomic # 6 Polarization: -53.08 SS G_CDS: 4.73 Total: -48.35 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.43 Total: -74.64 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.15 6.38 -64.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.435 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds