Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.36829 * 125.03572 * 2 1 4 4 H 0.97003 * 125.06554 * 359.94309 * 3 2 1 5 5 C 1.37684 * 109.87652 * 179.97438 * 3 2 1 6 6 C 1.39123 * 133.51146 * 180.02562 * 5 3 2 7 7 C 1.37757 * 119.77972 * 179.26260 * 6 5 3 8 8 C 1.50703 * 119.66455 * 180.23904 * 7 6 5 9 9 C 1.38827 * 120.66260 * 0.63100 * 7 6 5 10 10 C 1.36628 * 120.53097 * 359.58541 * 9 7 6 11 11 C 1.50695 * 120.11554 * 180.02562 * 10 9 7 12 12 C 1.39624 * 119.76075 * 0.02562 * 10 9 7 13 13 C 1.34238 * 125.03379 * 179.97438 * 2 1 3 14 14 C 1.50699 * 126.50344 * 359.97438 * 13 2 1 15 15 C 1.50706 * 109.46939 * 95.62745 * 14 13 2 16 16 H 1.08000 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99689 * 359.72530 * 17 15 14 19 19 Si 1.86799 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47022 * 89.99725 * 19 17 15 21 21 H 1.48495 * 109.47244 * 210.00138 * 19 17 15 22 22 H 1.48502 * 109.47152 * 330.00068 * 19 17 15 23 23 H 1.09008 * 109.47204 * 270.04443 * 1 2 3 24 24 H 1.09004 * 109.47390 * 30.04091 * 1 2 3 25 25 H 1.08995 * 109.47256 * 150.04151 * 1 2 3 26 26 H 1.08006 * 120.11133 * 359.97248 * 6 5 3 27 27 H 1.08997 * 109.46764 * 270.38777 * 8 7 6 28 28 H 1.08996 * 109.47607 * 30.39399 * 8 7 6 29 29 H 1.09001 * 109.46848 * 150.39201 * 8 7 6 30 30 H 1.08005 * 119.73060 * 179.60311 * 9 7 6 31 31 H 1.09001 * 109.47121 * 263.90421 * 11 10 9 32 32 H 1.08996 * 109.47857 * 23.90546 * 11 10 9 33 33 H 1.09002 * 109.47228 * 143.90362 * 11 10 9 34 34 H 1.09002 * 109.46778 * 335.63237 * 14 13 2 35 35 H 1.09000 * 109.47085 * 215.62685 * 14 13 2 36 36 H 0.97008 * 119.99331 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0325 -0.0008 5 6 3.6214 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8182 0.0171 8 6 7.3015 1.6044 0.0233 9 6 6.0588 -0.5694 0.0193 10 6 4.9040 -1.2996 0.0142 11 6 4.9616 -2.8055 0.0172 12 6 3.6705 -0.6455 0.0063 13 6 2.2775 -1.0992 0.0005 14 6 1.8003 -2.5286 0.0017 15 6 1.7729 -3.0502 -1.4120 16 1 2.0716 -2.4106 -2.2294 17 6 1.3664 -4.3438 -1.6617 18 7 1.0078 -5.1242 -0.6657 19 14 1.3331 -4.9905 -3.4139 20 1 2.6456 -5.6036 -3.7402 21 1 0.2634 -6.0122 -3.5442 22 1 1.0638 -3.8697 -4.3502 23 1 -0.3634 0.0008 1.0277 24 1 -0.3634 0.8896 -0.5145 25 1 -0.3633 -0.8903 -0.5132 26 1 4.7868 2.5635 0.0010 27 1 7.6172 1.7925 -1.0028 28 1 7.1444 2.5539 0.5350 29 1 8.0728 1.0353 0.5423 30 1 7.0128 -1.0757 0.0253 31 1 4.8721 -3.1745 -1.0045 32 1 5.9119 -3.1320 0.4395 33 1 4.1424 -3.1992 0.6189 34 1 0.7974 -2.5764 0.4261 35 1 2.4778 -3.1373 0.6005 36 1 0.7222 -6.0345 -0.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = 29.755002 kcal Electronic energy + Delta-G solvation = -17200.242397 eV Core-core repulsion = 14648.590192 eV Total energy + Delta-G solvation = -2551.652205 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70263 -37.12251 -33.87864 -32.64129 -31.44639 -29.98936 -28.31684 -27.20983 -26.38281 -24.15296 -22.54042 -21.28451 -19.75951 -18.07028 -16.52167 -16.17913 -15.68018 -14.55382 -14.43420 -14.23935 -13.57923 -13.29859 -12.85419 -12.62525 -12.51373 -12.22746 -12.11867 -12.00412 -11.77079 -11.60581 -11.32664 -11.13561 -10.85639 -10.70652 -10.44413 -10.24681 -9.81149 -9.60848 -9.35137 -8.48097 -8.31058 -7.46904 -6.67878 -5.93079 -3.96315 1.71071 2.20503 3.34495 3.40129 3.42482 3.51155 3.71169 4.42782 4.54759 5.19282 5.28374 5.38354 5.45280 5.53866 5.66441 5.77421 5.81827 5.89591 5.95665 6.05611 6.08639 6.25348 6.33841 6.40196 6.55191 6.58061 6.62218 6.86279 6.93997 7.07995 7.31655 7.45041 7.60899 7.66043 7.84189 8.00874 8.03709 8.23398 8.49136 9.08968 9.66424 11.14556 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.007651 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.919755 B = 3658.754168 C = 4388.395715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.030 3.970 3 N -0.601 5.601 4 H 0.403 0.597 5 C 0.100 3.900 6 C -0.152 4.152 7 C -0.072 4.072 8 C -0.105 4.105 9 C -0.170 4.170 10 C -0.010 4.010 11 C -0.116 4.116 12 C -0.104 4.104 13 C -0.102 4.102 14 C 0.078 3.922 15 C -0.498 4.498 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.025 0.975 35 H 0.033 0.967 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 11.506 2.311 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 N -0.205 5.205 4 H 0.238 0.762 5 C -0.008 4.008 6 C -0.173 4.173 7 C -0.073 4.073 8 C -0.161 4.161 9 C -0.189 4.189 10 C -0.010 4.010 11 C -0.172 4.172 12 C -0.109 4.109 13 C -0.108 4.108 14 C 0.041 3.959 15 C -0.536 4.536 16 H 0.071 0.929 17 C -0.142 4.142 18 N -0.536 5.536 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.786 11.408 2.349 13.005 hybrid contribution -0.188 0.158 -1.080 1.107 sum 5.599 11.566 1.269 12.912 Atomic orbital electron populations 1.20319 0.88384 1.03235 1.01914 1.20001 0.93078 0.85217 1.09089 1.41550 1.03829 1.07599 1.67518 0.76150 1.18153 0.84471 0.94342 1.03804 1.19605 0.89453 0.97842 1.10406 1.19345 0.93696 0.93686 1.00575 1.20685 0.94699 0.99116 1.01648 1.20265 0.97276 0.92836 1.08559 1.19186 0.90924 0.96104 0.94829 1.20913 1.01786 0.90878 1.03666 1.19098 0.93636 0.91313 1.06879 1.20991 0.89299 0.96791 1.03699 1.17852 0.96130 0.84673 0.97222 1.21073 1.43304 0.96846 0.92419 0.92859 1.24962 0.95685 0.96944 0.96658 1.69954 1.45522 1.07585 1.30535 0.86663 0.77676 0.78669 0.85464 1.20704 1.21331 1.20015 0.91815 0.92853 0.88896 0.87402 0.91796 0.92285 0.91909 0.86880 0.90466 0.93200 0.89733 0.95728 0.94899 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.95 36.00 0.36 -0.97 16 2 C 0.03 0.58 7.08 -81.78 -0.58 0.01 16 3 N -0.60 -10.31 6.07 -6.96 -0.04 -10.35 16 4 H 0.40 5.35 8.96 -40.82 -0.37 4.98 16 5 C 0.10 1.89 7.28 -83.99 -0.61 1.28 16 6 C -0.15 -2.48 9.71 -39.43 -0.38 -2.87 16 7 C -0.07 -1.13 5.88 -104.58 -0.61 -1.74 16 8 C -0.10 -1.21 9.99 36.01 0.36 -0.85 16 9 C -0.17 -2.91 9.24 -39.95 -0.37 -3.28 16 10 C -0.01 -0.20 5.87 -104.69 -0.61 -0.81 16 11 C -0.12 -2.28 9.55 36.00 0.34 -1.94 16 12 C -0.10 -2.24 6.15 -105.14 -0.65 -2.89 16 13 C -0.10 -2.31 5.50 -102.71 -0.57 -2.88 16 14 C 0.08 2.01 4.55 -29.03 -0.13 1.88 16 15 C -0.50 -13.77 9.09 -34.44 -0.31 -14.08 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 1.71 7.53 -51.93 -0.39 1.32 16 26 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.11 1.68 8.05 -52.48 -0.42 1.25 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.05 0.82 8.03 -51.93 -0.42 0.40 16 33 H 0.08 1.84 5.41 -51.93 -0.28 1.56 16 34 H 0.02 0.65 7.43 -51.93 -0.39 0.27 16 35 H 0.03 0.89 5.60 -51.93 -0.29 0.60 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -30.61 299.37 -8.73 -39.33 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.05 Total: 2.90 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -3.86 Total: -27.62 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.69 Total: -35.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.61 -8.73 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.088 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds