Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.36829 * 125.03572 * 2 1 4 4 H 0.97003 * 125.06554 * 359.94309 * 3 2 1 5 5 C 1.37684 * 109.87652 * 179.97438 * 3 2 1 6 6 C 1.39123 * 133.51146 * 180.02562 * 5 3 2 7 7 C 1.37757 * 119.77972 * 179.26260 * 6 5 3 8 8 C 1.50703 * 119.66455 * 180.23904 * 7 6 5 9 9 C 1.38827 * 120.66260 * 0.63100 * 7 6 5 10 10 C 1.36628 * 120.53097 * 359.58541 * 9 7 6 11 11 C 1.50695 * 120.11554 * 180.02562 * 10 9 7 12 12 C 1.39624 * 119.76075 * 0.02562 * 10 9 7 13 13 C 1.34238 * 125.03379 * 179.97438 * 2 1 3 14 14 C 1.50699 * 126.50344 * 359.97438 * 13 2 1 15 15 C 1.50706 * 109.46939 * 95.62745 * 14 13 2 16 16 H 1.08000 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99689 * 359.72530 * 17 15 14 19 19 Si 1.86799 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47022 * 89.99725 * 19 17 15 21 21 H 1.48495 * 109.47244 * 210.00138 * 19 17 15 22 22 H 1.48502 * 109.47152 * 330.00068 * 19 17 15 23 23 H 1.09008 * 109.47204 * 270.04443 * 1 2 3 24 24 H 1.09004 * 109.47390 * 30.04091 * 1 2 3 25 25 H 1.08995 * 109.47256 * 150.04151 * 1 2 3 26 26 H 1.08006 * 120.11133 * 359.97248 * 6 5 3 27 27 H 1.08997 * 109.46764 * 270.38777 * 8 7 6 28 28 H 1.08996 * 109.47607 * 30.39399 * 8 7 6 29 29 H 1.09001 * 109.46848 * 150.39201 * 8 7 6 30 30 H 1.08005 * 119.73060 * 179.60311 * 9 7 6 31 31 H 1.09001 * 109.47121 * 263.90421 * 11 10 9 32 32 H 1.08996 * 109.47857 * 23.90546 * 11 10 9 33 33 H 1.09002 * 109.47228 * 143.90362 * 11 10 9 34 34 H 1.09002 * 109.46778 * 335.63237 * 14 13 2 35 35 H 1.09000 * 109.47085 * 215.62685 * 14 13 2 36 36 H 0.97008 * 119.99331 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0325 -0.0008 5 6 3.6214 0.7603 0.0006 6 6 4.8098 1.4837 0.0013 7 6 6.0158 0.8182 0.0171 8 6 7.3015 1.6044 0.0233 9 6 6.0588 -0.5694 0.0193 10 6 4.9040 -1.2996 0.0142 11 6 4.9616 -2.8055 0.0172 12 6 3.6705 -0.6455 0.0063 13 6 2.2775 -1.0992 0.0005 14 6 1.8003 -2.5286 0.0017 15 6 1.7729 -3.0502 -1.4120 16 1 2.0716 -2.4106 -2.2294 17 6 1.3664 -4.3438 -1.6617 18 7 1.0078 -5.1242 -0.6657 19 14 1.3331 -4.9905 -3.4139 20 1 2.6456 -5.6036 -3.7402 21 1 0.2634 -6.0122 -3.5442 22 1 1.0638 -3.8697 -4.3502 23 1 -0.3634 0.0008 1.0277 24 1 -0.3634 0.8896 -0.5145 25 1 -0.3633 -0.8903 -0.5132 26 1 4.7868 2.5635 0.0010 27 1 7.6172 1.7925 -1.0028 28 1 7.1444 2.5539 0.5350 29 1 8.0728 1.0353 0.5423 30 1 7.0128 -1.0757 0.0253 31 1 4.8721 -3.1745 -1.0045 32 1 5.9119 -3.1320 0.4395 33 1 4.1424 -3.1992 0.6189 34 1 0.7974 -2.5764 0.4261 35 1 2.4778 -3.1373 0.6005 36 1 0.7222 -6.0345 -0.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = 13.058668 kcal Electronic energy + Delta-G solvation = -17200.966405 eV Core-core repulsion = 14648.590192 eV Total energy + Delta-G solvation = -2552.376213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14376 -38.47272 -35.70547 -34.29099 -32.96400 -31.58712 -29.68394 -28.86092 -27.81289 -25.75837 -24.36622 -22.69104 -21.09636 -19.68167 -18.39445 -17.86187 -17.08635 -16.45765 -15.89983 -15.69475 -14.94939 -14.45255 -14.29034 -14.26578 -14.06536 -13.94709 -13.64233 -13.34411 -13.26208 -12.98737 -12.81555 -12.67542 -12.56624 -12.50417 -12.00665 -11.63424 -11.58852 -11.44822 -11.33583 -10.48171 -10.01526 -8.86085 -8.31144 -7.97264 -6.20295 0.31760 0.81869 1.39296 1.39906 1.50625 1.92491 2.34879 2.46113 3.03391 3.19331 3.91594 4.04790 4.09444 4.35466 4.44195 4.49766 4.58986 4.65782 4.78628 4.81701 4.86768 4.90769 4.96673 4.97967 5.12495 5.18143 5.20514 5.34792 5.42460 5.51466 5.70654 5.81714 5.83803 5.93452 6.05813 6.17286 6.36588 6.45017 6.88938 6.94636 7.46121 8.97992 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.007651 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.919755 B = 3658.754168 C = 4388.395715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.584 5.584 4 H 0.425 0.575 5 C 0.089 3.911 6 C -0.147 4.147 7 C -0.070 4.070 8 C -0.101 4.101 9 C -0.164 4.164 10 C -0.046 4.046 11 C -0.106 4.106 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.095 3.905 15 C -0.504 4.504 16 H 0.039 0.961 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.271 1.271 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.001 0.999 35 H 0.006 0.994 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 14.205 1.637 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 N -0.190 5.190 4 H 0.264 0.736 5 C -0.019 4.019 6 C -0.168 4.168 7 C -0.072 4.072 8 C -0.158 4.158 9 C -0.183 4.183 10 C -0.047 4.047 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.058 3.942 15 C -0.543 4.543 16 H 0.058 0.942 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.776 3.224 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.196 1.196 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.204 14.145 1.675 15.962 hybrid contribution -0.563 -0.603 -0.821 1.163 sum 6.642 13.542 0.854 15.107 Atomic orbital electron populations 1.20358 0.86382 1.03620 1.03222 1.20284 0.94328 0.85221 1.06225 1.41418 1.03123 1.08018 1.66468 0.73597 1.18455 0.85772 0.93494 1.04140 1.20058 0.88444 0.99595 1.08704 1.19886 0.95528 0.93345 0.98406 1.20756 0.92505 0.99494 1.03022 1.20605 0.97080 0.93897 1.06713 1.19353 0.91864 0.95973 0.97479 1.20742 1.01974 0.91722 1.01756 1.19365 0.93465 0.93182 1.08572 1.20786 0.91314 0.95978 1.08514 1.17467 0.94129 0.87012 0.95604 1.21227 1.42985 0.97016 0.93047 0.94226 1.25730 0.95273 0.97109 1.00662 1.70068 1.46337 1.07931 1.32591 0.85665 0.77967 0.78147 0.80616 1.20105 1.20405 1.19551 0.90006 0.89227 0.91613 0.83828 0.90395 0.90299 0.90588 0.84550 0.92742 0.90229 0.93025 0.98030 0.97554 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.52 9.95 71.23 0.71 -1.81 16 2 C 0.05 1.78 7.08 40.86 0.29 2.07 16 3 N -0.58 -19.06 6.07 -175.92 -1.07 -20.13 16 4 H 0.42 9.96 8.96 -92.71 -0.83 9.13 16 5 C 0.09 3.25 7.28 39.03 0.28 3.54 16 6 C -0.15 -4.32 9.71 22.37 0.22 -4.10 16 7 C -0.07 -1.97 5.88 -19.84 -0.12 -2.09 16 8 C -0.10 -1.85 9.99 71.24 0.71 -1.13 16 9 C -0.16 -5.34 9.24 22.03 0.20 -5.14 16 10 C -0.05 -1.88 5.87 -19.91 -0.12 -2.00 16 11 C -0.11 -4.39 9.55 71.23 0.68 -3.71 16 12 C -0.14 -6.22 6.15 -20.20 -0.12 -6.34 16 13 C -0.16 -7.60 5.50 -18.62 -0.10 -7.71 16 14 C 0.10 5.25 4.55 29.10 0.13 5.38 16 15 C -0.50 -29.41 9.09 25.60 0.23 -29.18 16 16 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 17 C 0.01 0.57 5.46 84.66 0.46 1.03 16 18 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 19 Si 0.95 45.33 29.54 68.60 2.03 47.35 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.06 2.49 7.53 -2.39 -0.02 2.47 16 26 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 29 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.14 3.69 8.05 -2.91 -0.02 3.66 16 31 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 33 H 0.05 2.45 5.41 -2.39 -0.01 2.44 16 34 H 0.00 0.08 7.43 -2.39 -0.02 0.07 16 35 H 0.01 0.38 5.60 -2.39 -0.01 0.37 16 36 H 0.26 14.98 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -70.03 299.37 4.96 -65.07 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.25 Total: 14.83 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 3.46 Total: -51.19 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -0.78 Total: -76.06 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.03 4.96 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.131 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds