Wall clock time and date at job start Mon Mar 30 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38896 * 125.35235 * 2 1 4 4 C 1.40897 * 126.93226 * 0.22679 * 3 2 1 5 5 H 1.07993 * 119.99851 * 221.60231 * 4 3 2 6 6 C 1.39736 * 119.99707 * 41.60351 * 4 3 2 7 7 N 1.31055 * 120.00562 * 17.00069 * 6 4 3 8 8 Si 1.86803 * 119.99983 * 197.00122 * 6 4 3 9 9 H 1.48499 * 109.46872 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47161 * 119.99935 * 8 6 4 11 11 H 1.48501 * 109.47060 * 240.00048 * 8 6 4 12 12 C 1.47677 * 106.14021 * 180.26179 * 3 2 1 13 13 C 1.40385 * 106.05942 * 0.02562 * 12 3 2 14 14 C 1.39077 * 119.30396 * 179.97438 * 13 12 3 15 15 C 1.37911 * 119.96804 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.68485 * 180.02562 * 15 14 13 17 17 C 1.38623 * 120.62252 * 359.97438 * 15 14 13 18 18 C 1.37923 * 120.25611 * 359.97438 * 17 15 14 19 19 C 1.50703 * 120.15536 * 179.97438 * 18 17 15 20 20 N 1.35636 * 125.35584 * 180.30287 * 2 1 3 21 21 C 1.46506 * 124.68736 * 359.76193 * 20 2 1 22 22 H 1.08994 * 109.47648 * 264.59811 * 1 2 3 23 23 H 1.09008 * 109.47183 * 24.59629 * 1 2 3 24 24 H 1.09000 * 109.47135 * 144.58669 * 1 2 3 25 25 H 0.96997 * 120.00495 * 184.90963 * 7 6 4 26 26 H 1.07996 * 120.01517 * 180.02562 * 14 13 12 27 27 H 1.08994 * 109.47211 * 90.00031 * 16 15 14 28 28 H 1.08996 * 109.46606 * 210.00029 * 16 15 14 29 29 H 1.09002 * 109.47208 * 329.99910 * 16 15 14 30 30 H 1.08007 * 119.87382 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.46903 * 95.40710 * 19 18 17 32 32 H 1.08996 * 109.46895 * 215.40840 * 19 18 17 33 33 H 1.08999 * 109.46575 * 335.40726 * 19 18 17 34 34 H 1.09001 * 109.46902 * 89.97347 * 21 20 2 35 35 H 1.09000 * 109.46928 * 209.97059 * 21 20 2 36 36 H 1.08997 * 109.47028 * 329.97580 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.1329 0.0000 4 6 1.8819 2.4750 0.0045 5 1 2.3818 3.2036 -0.6165 6 6 0.8100 2.8633 0.8123 7 7 0.4185 2.0922 1.7971 8 14 -0.0653 4.4815 0.4887 9 1 0.5647 5.1616 -0.6714 10 1 -1.4966 4.2195 0.1921 11 1 0.0406 5.3502 1.6885 12 6 3.7052 0.6469 -0.0065 13 6 3.6280 -0.7548 -0.0105 14 6 4.8015 -1.5012 -0.0175 15 6 6.0239 -0.8628 -0.0199 16 6 7.2915 -1.6778 -0.0282 17 6 6.0976 0.5215 -0.0160 18 6 4.9449 1.2788 -0.0100 19 6 5.0277 2.7835 -0.0051 20 7 2.2919 -1.1062 -0.0058 21 6 1.7918 -2.4833 -0.0081 22 1 -0.3634 -0.0967 1.0230 23 1 -0.3634 0.9345 -0.4278 24 1 -0.3633 -0.8375 -0.5955 25 1 -0.3690 2.3262 2.3128 26 1 4.7555 -2.5802 -0.0211 27 1 7.5930 -1.8703 -1.0577 28 1 8.0804 -1.1276 0.4847 29 1 7.1179 -2.6249 0.4827 30 1 7.0614 1.0089 -0.0183 31 1 4.9480 3.1551 -1.0267 32 1 4.2130 3.1902 0.5940 33 1 5.9819 3.0934 0.4209 34 1 1.6639 -2.8216 -1.0364 35 1 2.5064 -3.1301 0.5010 36 1 0.8333 -2.5226 0.5092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:31 Heat of formation + Delta-G solvation = 35.833130 kcal Electronic energy + Delta-G solvation = -17525.970034 eV Core-core repulsion = 14974.581396 eV Total energy + Delta-G solvation = -2551.388638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96072 -36.67059 -33.90946 -32.54723 -30.53649 -30.22252 -27.77160 -26.74571 -26.12535 -24.71798 -22.63933 -20.47264 -19.22893 -18.62353 -16.40760 -15.36602 -15.08427 -14.61939 -14.36299 -14.04587 -13.18115 -13.06901 -12.81367 -12.48499 -12.40947 -12.08542 -11.91451 -11.83394 -11.57513 -11.23482 -11.20110 -11.12323 -10.88559 -10.72642 -10.67608 -10.25194 -9.73999 -9.71740 -9.55278 -8.73563 -7.97833 -6.86992 -6.49686 -6.09519 -3.96602 2.20539 2.63902 3.12912 3.24858 3.30041 4.02162 4.12973 4.22332 4.80924 5.35383 5.48965 5.53533 5.60228 5.80055 5.88904 5.95843 6.00489 6.02088 6.15542 6.25417 6.28533 6.40470 6.45530 6.56363 6.68045 6.85461 6.89494 6.98878 7.11259 7.29273 7.33851 7.48887 7.57087 7.69382 7.85392 8.16759 8.46308 8.64752 8.88097 9.16928 9.24942 10.63436 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.008917 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.545657 B = 3139.337301 C = 4100.874114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.047 4.047 3 C 0.053 3.947 4 C -0.448 4.448 5 H 0.073 0.927 6 C 0.076 3.924 7 N -0.822 5.822 8 Si 0.888 3.112 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.281 1.281 12 C -0.121 4.121 13 C 0.098 3.902 14 C -0.157 4.157 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.187 4.187 18 C -0.019 4.019 19 C -0.110 4.110 20 N -0.479 5.479 21 C 0.090 3.910 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.269 0.731 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -5.033 -2.443 7.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.150 4.150 3 C 0.048 3.952 4 C -0.481 4.481 5 H 0.091 0.909 6 C -0.136 4.136 7 N -0.452 5.452 8 Si 0.714 3.286 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.207 1.207 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.179 4.179 15 C -0.085 4.085 16 C -0.157 4.157 17 C -0.207 4.207 18 C -0.020 4.020 19 C -0.166 4.166 20 N -0.164 5.164 21 C -0.053 4.053 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.874 -5.282 -2.218 6.916 hybrid contribution -0.578 0.490 0.047 0.759 sum 3.295 -4.792 -2.171 6.208 Atomic orbital electron populations 1.19835 0.89608 0.99616 1.00203 1.20474 0.92145 0.84159 1.18228 1.17674 0.86303 0.92208 0.98992 1.18484 1.14377 0.93012 1.22244 0.90928 1.25521 0.97135 0.97579 0.93365 1.69976 1.22165 1.38297 1.14809 0.86590 0.79710 0.83356 0.78924 1.18894 1.20362 1.20670 1.19540 0.94480 0.91608 1.07144 1.18071 0.83933 0.94248 1.04809 1.19537 0.89942 0.97164 1.11219 1.19148 0.93264 0.93656 1.02466 1.20619 0.95206 0.98784 1.01054 1.20310 0.96648 0.92707 1.11055 1.19208 0.91237 0.95142 0.96395 1.20777 1.01713 0.92329 1.01798 1.43023 1.03524 1.04829 1.64982 1.21579 0.99995 0.82719 1.01041 0.92431 0.91554 0.96017 0.92098 0.88400 0.92359 0.92385 0.92691 0.87799 0.92252 0.89658 0.93547 0.93131 0.91833 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.79 7.94 36.01 0.29 -0.51 16 2 C -0.05 -1.18 6.60 -80.67 -0.53 -1.71 16 3 C 0.05 1.43 5.60 -104.79 -0.59 0.85 16 4 C -0.45 -11.93 7.42 -38.02 -0.28 -12.21 16 5 H 0.07 1.90 7.29 -52.49 -0.38 1.52 16 6 C 0.08 1.94 4.18 -17.32 -0.07 1.87 16 7 N -0.82 -21.75 10.92 55.54 0.61 -21.14 16 8 Si 0.89 19.39 29.60 -169.99 -5.03 14.36 16 9 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C -0.12 -3.06 6.15 -104.90 -0.65 -3.71 16 13 C 0.10 2.29 6.77 -83.90 -0.57 1.73 16 14 C -0.16 -3.18 9.51 -39.39 -0.37 -3.56 16 15 C -0.08 -1.59 5.88 -104.60 -0.61 -2.20 16 16 C -0.10 -1.42 9.99 36.01 0.36 -1.06 16 17 C -0.19 -3.71 9.32 -39.55 -0.37 -4.08 16 18 C -0.02 -0.43 5.90 -104.40 -0.62 -1.05 16 19 C -0.11 -2.20 9.30 36.01 0.33 -1.86 16 20 N -0.48 -10.85 3.15 -116.18 -0.37 -11.22 16 21 C 0.09 1.54 10.58 59.85 0.63 2.17 16 22 H 0.06 1.33 7.49 -51.93 -0.39 0.94 16 23 H 0.07 1.56 6.96 -51.92 -0.36 1.20 16 24 H 0.02 0.41 7.80 -51.93 -0.41 0.01 16 25 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.10 1.73 7.96 -52.49 -0.42 1.32 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.89 6.49 -51.93 -0.34 1.55 16 33 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.97 7.95 -51.93 -0.41 0.55 16 36 H 0.07 1.14 7.57 -51.93 -0.39 0.74 16 LS Contribution 294.64 15.07 4.44 4.44 Total: -1.00 -29.14 294.64 -8.58 -37.72 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.18 Total: 1.19 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -3.05 Total: -25.35 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.24 Total: -32.36 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.14 -8.58 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.553 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds