Wall clock time and date at job start Mon Mar 30 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38896 * 125.35235 * 2 1 4 4 C 1.40897 * 126.93226 * 0.22679 * 3 2 1 5 5 H 1.07993 * 119.99851 * 221.60231 * 4 3 2 6 6 C 1.39736 * 119.99707 * 41.60351 * 4 3 2 7 7 N 1.31055 * 120.00562 * 17.00069 * 6 4 3 8 8 Si 1.86803 * 119.99983 * 197.00122 * 6 4 3 9 9 H 1.48499 * 109.46872 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47161 * 119.99935 * 8 6 4 11 11 H 1.48501 * 109.47060 * 240.00048 * 8 6 4 12 12 C 1.47677 * 106.14021 * 180.26179 * 3 2 1 13 13 C 1.40385 * 106.05942 * 0.02562 * 12 3 2 14 14 C 1.39077 * 119.30396 * 179.97438 * 13 12 3 15 15 C 1.37911 * 119.96804 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.68485 * 180.02562 * 15 14 13 17 17 C 1.38623 * 120.62252 * 359.97438 * 15 14 13 18 18 C 1.37923 * 120.25611 * 359.97438 * 17 15 14 19 19 C 1.50703 * 120.15536 * 179.97438 * 18 17 15 20 20 N 1.35636 * 125.35584 * 180.30287 * 2 1 3 21 21 C 1.46506 * 124.68736 * 359.76193 * 20 2 1 22 22 H 1.08994 * 109.47648 * 264.59811 * 1 2 3 23 23 H 1.09008 * 109.47183 * 24.59629 * 1 2 3 24 24 H 1.09000 * 109.47135 * 144.58669 * 1 2 3 25 25 H 0.96997 * 120.00495 * 184.90963 * 7 6 4 26 26 H 1.07996 * 120.01517 * 180.02562 * 14 13 12 27 27 H 1.08994 * 109.47211 * 90.00031 * 16 15 14 28 28 H 1.08996 * 109.46606 * 210.00029 * 16 15 14 29 29 H 1.09002 * 109.47208 * 329.99910 * 16 15 14 30 30 H 1.08007 * 119.87382 * 180.02562 * 17 15 14 31 31 H 1.08997 * 109.46903 * 95.40710 * 19 18 17 32 32 H 1.08996 * 109.46895 * 215.40840 * 19 18 17 33 33 H 1.08999 * 109.46575 * 335.40726 * 19 18 17 34 34 H 1.09001 * 109.46902 * 89.97347 * 21 20 2 35 35 H 1.09000 * 109.46928 * 209.97059 * 21 20 2 36 36 H 1.08997 * 109.47028 * 329.97580 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.1329 0.0000 4 6 1.8819 2.4750 0.0045 5 1 2.3818 3.2036 -0.6165 6 6 0.8100 2.8633 0.8123 7 7 0.4185 2.0922 1.7971 8 14 -0.0653 4.4815 0.4887 9 1 0.5647 5.1616 -0.6714 10 1 -1.4966 4.2195 0.1921 11 1 0.0406 5.3502 1.6885 12 6 3.7052 0.6469 -0.0065 13 6 3.6280 -0.7548 -0.0105 14 6 4.8015 -1.5012 -0.0175 15 6 6.0239 -0.8628 -0.0199 16 6 7.2915 -1.6778 -0.0282 17 6 6.0976 0.5215 -0.0160 18 6 4.9449 1.2788 -0.0100 19 6 5.0277 2.7835 -0.0051 20 7 2.2919 -1.1062 -0.0058 21 6 1.7918 -2.4833 -0.0081 22 1 -0.3634 -0.0967 1.0230 23 1 -0.3634 0.9345 -0.4278 24 1 -0.3633 -0.8375 -0.5955 25 1 -0.3690 2.3262 2.3128 26 1 4.7555 -2.5802 -0.0211 27 1 7.5930 -1.8703 -1.0577 28 1 8.0804 -1.1276 0.4847 29 1 7.1179 -2.6249 0.4827 30 1 7.0614 1.0089 -0.0183 31 1 4.9480 3.1551 -1.0267 32 1 4.2130 3.1902 0.5940 33 1 5.9819 3.0934 0.4209 34 1 1.6639 -2.8216 -1.0364 35 1 2.5064 -3.1301 0.5010 36 1 0.8333 -2.5226 0.5092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:31 Heat of formation + Delta-G solvation = 21.594381 kcal Electronic energy + Delta-G solvation = -17526.587473 eV Core-core repulsion = 14974.581396 eV Total energy + Delta-G solvation = -2552.006076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63813 -38.25923 -35.71720 -34.15733 -32.14102 -31.93808 -29.39431 -28.42244 -27.68207 -26.29542 -24.34069 -22.14858 -20.82275 -20.39641 -18.18851 -17.11542 -16.71439 -16.36077 -15.96839 -15.61088 -14.72724 -14.51113 -14.32498 -14.12348 -13.87940 -13.75985 -13.51658 -13.22390 -13.16148 -12.98589 -12.76977 -12.68976 -12.54722 -12.39990 -12.33325 -11.91438 -11.55858 -11.38976 -11.11683 -10.61876 -9.68738 -8.54304 -8.39293 -7.90651 -5.91682 0.55494 1.01777 1.38285 1.44194 1.56089 2.27082 2.38682 2.47414 3.08936 3.47788 4.08176 4.15034 4.21681 4.44976 4.50463 4.53825 4.63706 4.65474 4.71416 4.76308 4.84774 4.93824 4.99360 5.05608 5.10056 5.14317 5.23297 5.34214 5.40128 5.51416 5.59368 5.71408 5.95893 6.02781 6.16666 6.39188 6.67630 6.85325 7.09139 7.25713 7.34777 8.74140 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.008917 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.545657 B = 3139.337301 C = 4100.874114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.058 4.058 3 C 0.006 3.994 4 C -0.470 4.470 5 H 0.060 0.940 6 C 0.039 3.961 7 N -0.855 5.855 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.279 1.279 12 C -0.168 4.168 13 C 0.079 3.921 14 C -0.163 4.163 15 C -0.079 4.079 16 C -0.096 4.096 17 C -0.185 4.185 18 C -0.047 4.047 19 C -0.101 4.101 20 N -0.487 5.487 21 C 0.084 3.916 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.272 0.728 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -6.461 -2.802 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.162 4.162 3 C 0.000 4.000 4 C -0.504 4.504 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.486 5.486 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.204 1.204 12 C -0.174 4.174 13 C -0.030 4.030 14 C -0.185 4.185 15 C -0.080 4.080 16 C -0.153 4.153 17 C -0.204 4.204 18 C -0.047 4.047 19 C -0.158 4.158 20 N -0.172 5.172 21 C -0.058 4.058 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.426 -6.737 -2.585 9.028 hybrid contribution -0.894 0.819 0.134 1.220 sum 4.532 -5.918 -2.451 7.846 Atomic orbital electron populations 1.19697 0.88521 0.99879 0.99913 1.20779 0.93094 0.84995 1.17309 1.18102 0.88010 0.92945 1.00894 1.18579 1.15568 0.93351 1.22903 0.92158 1.26140 0.97422 1.00552 0.92792 1.70040 1.22784 1.40155 1.15639 0.85608 0.78772 0.79447 0.78541 1.18931 1.19411 1.20437 1.19908 0.94874 0.93183 1.09453 1.18531 0.85153 0.94176 1.05132 1.19931 0.89273 0.98555 1.10701 1.19770 0.94865 0.93825 0.99585 1.20689 0.92955 0.98882 1.02745 1.20723 0.96906 0.93449 1.09351 1.19594 0.91491 0.96341 0.97296 1.20687 1.02026 0.91433 1.01651 1.43264 1.03208 1.06142 1.64595 1.21877 1.00855 0.80289 1.02758 0.93393 0.93324 0.93006 0.91816 0.85581 0.90490 0.90688 0.91054 0.84800 0.91919 0.92723 0.90525 0.91144 0.89738 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.04 7.94 71.24 0.57 -0.47 16 2 C -0.06 -2.95 6.60 42.13 0.28 -2.67 16 3 C 0.01 0.34 5.60 -19.98 -0.11 0.22 16 4 C -0.47 -26.39 7.42 23.28 0.17 -26.22 16 5 H 0.06 3.37 7.29 -2.91 -0.02 3.35 16 6 C 0.04 2.09 4.18 85.17 0.36 2.45 16 7 N -0.85 -46.85 10.92 21.80 0.24 -46.61 16 8 Si 0.95 41.17 29.60 68.60 2.03 43.20 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 C -0.17 -8.70 6.15 -20.04 -0.12 -8.83 16 13 C 0.08 3.66 6.77 38.87 0.26 3.93 16 14 C -0.16 -6.25 9.51 22.39 0.21 -6.04 16 15 C -0.08 -2.75 5.88 -19.85 -0.12 -2.86 16 16 C -0.10 -2.28 9.99 71.24 0.71 -1.56 16 17 C -0.18 -6.94 9.32 22.29 0.21 -6.73 16 18 C -0.05 -2.11 5.90 -19.72 -0.12 -2.23 16 19 C -0.10 -4.14 9.30 71.24 0.66 -3.48 16 20 N -0.49 -22.01 3.15 -521.47 -1.64 -23.65 16 21 C 0.08 2.70 10.58 127.77 1.35 4.05 16 22 H 0.05 2.27 7.49 -2.39 -0.02 2.25 16 23 H 0.05 2.36 6.96 -2.38 -0.02 2.34 16 24 H 0.05 1.98 7.80 -2.39 -0.02 1.96 16 25 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.13 4.01 7.96 -2.91 -0.02 3.99 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.55 8.08 -2.39 -0.02 1.54 16 29 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.05 2.54 6.49 -2.39 -0.02 2.53 16 33 H 0.08 2.56 8.05 -2.39 -0.02 2.54 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.35 7.95 -2.39 -0.02 2.33 16 36 H 0.08 2.39 7.57 -2.39 -0.02 2.38 16 Total: -1.00 -65.89 294.64 6.00 -59.89 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.06 Total: 17.60 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 4.31 Total: -50.44 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.40 Total: -70.26 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -65.89 6.00 -59.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.483 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds