Wall clock time and date at job start Mon Mar 30 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34238 * 125.03294 * 2 1 4 4 C 1.50707 * 126.50435 * 0.04741 * 3 2 1 5 5 C 1.50698 * 109.47044 * 89.97629 * 4 3 2 6 6 H 1.08003 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00129 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99632 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 90.00256 * 9 7 5 11 11 H 1.48499 * 109.46891 * 210.00121 * 9 7 5 12 12 H 1.48498 * 109.47075 * 330.00234 * 9 7 5 13 13 C 1.46489 * 106.99717 * 180.02562 * 3 2 1 14 14 C 1.39630 * 134.02956 * 179.97438 * 13 3 2 15 15 C 1.36619 * 119.76480 * 180.02562 * 14 13 3 16 16 C 1.38833 * 120.52540 * 359.74998 * 15 14 13 17 17 C 1.50698 * 119.66674 * 180.25587 * 16 15 14 18 18 C 1.37745 * 120.66926 * 0.51093 * 16 15 14 19 19 C 1.39129 * 119.77529 * 359.49037 * 18 16 15 20 20 N 1.36831 * 125.03720 * 180.02562 * 2 1 3 21 21 C 1.46495 * 125.06009 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.47389 * 270.00372 * 1 2 3 23 23 H 1.09006 * 109.46905 * 30.00855 * 1 2 3 24 24 H 1.08998 * 109.46846 * 150.00369 * 1 2 3 25 25 H 1.09001 * 109.47294 * 209.97832 * 4 3 2 26 26 H 1.08996 * 109.46577 * 329.98289 * 4 3 2 27 27 H 0.97005 * 120.00171 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.11991 * 0.06420 * 14 13 3 29 29 H 1.08001 * 119.74077 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.47313 * 270.24998 * 17 16 15 31 31 H 1.09004 * 109.47349 * 30.24975 * 17 16 15 32 32 H 1.09004 * 109.47296 * 150.25003 * 17 16 15 33 33 H 1.08002 * 120.11529 * 179.77323 * 18 16 15 34 34 H 1.09000 * 109.47352 * 269.99643 * 21 20 2 35 35 H 1.08993 * 109.47159 * 29.99895 * 21 20 2 36 36 H 1.09004 * 109.46670 * 149.99917 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5287 0.0010 5 6 1.6416 3.0043 1.4221 6 1 1.8645 2.3382 2.2426 7 6 1.2119 4.2897 1.6750 8 7 0.9400 5.1006 0.6760 9 14 1.0159 4.8794 3.4366 10 1 2.2918 5.4798 3.9025 11 1 -0.0628 5.8980 3.5005 12 1 0.6631 3.7294 4.3073 13 6 3.6705 0.6456 -0.0006 14 6 4.9041 1.2997 -0.0014 15 6 6.0589 0.5697 -0.0023 16 6 6.0159 -0.8180 0.0026 17 6 7.3016 -1.6040 0.0072 18 6 4.8099 -1.4836 -0.0020 19 6 3.6215 -0.7602 -0.0009 20 7 2.2926 -1.1203 -0.0005 21 6 1.7939 -2.4978 -0.0006 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5140 24 1 -0.3633 -0.8900 -0.5138 25 1 2.5293 3.1555 -0.5127 26 1 0.8409 2.5916 -0.5124 27 1 0.6374 6.0049 0.8538 28 1 4.9453 2.3790 -0.0005 29 1 7.0128 1.0760 -0.0033 30 1 7.6154 -1.7934 -1.0193 31 1 8.0740 -1.0343 0.5240 32 1 7.1455 -2.5530 0.5204 33 1 4.7870 -2.5633 -0.0018 34 1 1.6706 -2.8397 1.0270 35 1 0.8332 -2.5364 -0.5140 36 1 2.5069 -3.1423 -0.5148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:24 Heat of formation + Delta-G solvation = 40.513622 kcal Electronic energy + Delta-G solvation = -17046.600064 eV Core-core repulsion = 14495.414388 eV Total energy + Delta-G solvation = -2551.185677 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77065 -37.12064 -33.86647 -32.36387 -31.51291 -30.09365 -28.46191 -27.98549 -25.51558 -24.30101 -22.39399 -21.45809 -20.00174 -18.07354 -16.24948 -15.99143 -15.85164 -14.98884 -14.53250 -14.35249 -13.59732 -13.41246 -13.37859 -12.80153 -12.51008 -12.47769 -12.21871 -11.95960 -11.85962 -11.62025 -11.51777 -11.25140 -10.88185 -10.69794 -10.45385 -10.31059 -10.09275 -9.58728 -9.35893 -8.63895 -8.31816 -7.42282 -6.70089 -5.92026 -3.95794 1.70184 2.17723 3.33387 3.35633 3.40365 3.43002 3.50157 4.44933 4.56462 5.00507 5.09608 5.30711 5.33620 5.38245 5.42616 5.49495 5.55670 5.59811 5.75702 5.81662 5.98019 5.99579 6.13773 6.15568 6.30675 6.44008 6.55907 6.67141 6.84740 7.04422 7.18054 7.47185 7.54633 7.66977 7.78608 7.98774 8.03381 8.09707 8.49385 9.09415 9.67118 11.15807 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.007250 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.098450 B = 3861.204810 C = 4668.827222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 C -0.106 4.106 4 C 0.083 3.917 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.103 4.103 14 C -0.049 4.049 15 C -0.163 4.163 16 C -0.079 4.079 17 C -0.105 4.105 18 C -0.141 4.141 19 C 0.098 3.902 20 N -0.493 5.493 21 C 0.085 3.915 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -13.987 -2.419 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C -0.112 4.112 4 C 0.046 3.954 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.108 4.108 14 C -0.068 4.068 15 C -0.183 4.183 16 C -0.080 4.080 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.008 4.008 20 N -0.178 5.178 21 C -0.057 4.057 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.927 -14.122 -2.454 15.157 hybrid contribution -0.138 0.276 1.065 1.109 sum 4.789 -13.846 -1.389 14.716 Atomic orbital electron populations 1.20289 0.88354 1.02262 1.02516 1.20009 0.93190 0.84652 1.08691 1.21013 0.89362 0.96736 1.04065 1.17705 0.96077 0.84567 0.97075 1.21113 1.43842 0.97086 0.91923 0.92798 1.24984 0.95738 0.96794 0.96843 1.69955 1.46335 1.06922 1.30479 0.86619 0.77746 0.78484 0.85342 1.20697 1.21282 1.19987 1.19270 0.94025 0.91445 1.06039 1.20369 0.90443 0.99891 0.96090 1.20371 0.97708 0.92999 1.07198 1.19372 0.93690 0.93800 1.01123 1.20685 0.94702 0.99163 1.01589 1.19619 0.89435 0.97829 1.09328 1.18171 0.84207 0.94198 1.04262 1.43544 1.03654 1.05244 1.65402 1.21724 1.00435 0.81469 1.02081 0.91176 0.89585 0.93118 0.95666 0.95535 0.93036 0.85843 0.86812 0.91833 0.91867 0.92299 0.87439 0.92193 0.90477 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.82 36.01 0.35 -0.95 16 2 C 0.04 0.75 6.83 -81.77 -0.56 0.19 16 3 C -0.11 -2.47 5.50 -102.71 -0.57 -3.04 16 4 C 0.08 2.21 5.26 -29.03 -0.15 2.05 16 5 C -0.50 -14.34 9.09 -34.44 -0.31 -14.65 16 6 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C -0.10 -2.25 6.35 -105.14 -0.67 -2.91 16 14 C -0.05 -0.99 10.05 -39.65 -0.40 -1.39 16 15 C -0.16 -2.75 9.62 -39.95 -0.38 -3.13 16 16 C -0.08 -1.22 5.88 -104.58 -0.61 -1.84 16 17 C -0.10 -1.19 9.99 36.00 0.36 -0.83 16 18 C -0.14 -2.31 9.60 -39.43 -0.38 -2.69 16 19 C 0.10 1.89 6.81 -83.99 -0.57 1.32 16 20 N -0.49 -8.83 3.18 -117.20 -0.37 -9.20 16 21 C 0.09 1.06 10.81 59.84 0.65 1.71 16 22 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.09 1.54 7.04 -51.93 -0.37 1.17 16 24 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.72 7.05 -51.93 -0.37 0.36 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.82 6.88 -51.93 -0.36 0.46 16 36 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -31.99 303.33 -8.64 -40.62 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.21 Total: -2.27 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.34 Total: -24.63 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.36 Total: -35.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.99 -8.64 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.136 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds