Wall clock time and date at job start Mon Mar 30 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34238 * 125.03294 * 2 1 4 4 C 1.50707 * 126.50435 * 0.04741 * 3 2 1 5 5 C 1.50698 * 109.47044 * 89.97629 * 4 3 2 6 6 H 1.08003 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00129 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99632 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 90.00256 * 9 7 5 11 11 H 1.48499 * 109.46891 * 210.00121 * 9 7 5 12 12 H 1.48498 * 109.47075 * 330.00234 * 9 7 5 13 13 C 1.46489 * 106.99717 * 180.02562 * 3 2 1 14 14 C 1.39630 * 134.02956 * 179.97438 * 13 3 2 15 15 C 1.36619 * 119.76480 * 180.02562 * 14 13 3 16 16 C 1.38833 * 120.52540 * 359.74998 * 15 14 13 17 17 C 1.50698 * 119.66674 * 180.25587 * 16 15 14 18 18 C 1.37745 * 120.66926 * 0.51093 * 16 15 14 19 19 C 1.39129 * 119.77529 * 359.49037 * 18 16 15 20 20 N 1.36831 * 125.03720 * 180.02562 * 2 1 3 21 21 C 1.46495 * 125.06009 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.47389 * 270.00372 * 1 2 3 23 23 H 1.09006 * 109.46905 * 30.00855 * 1 2 3 24 24 H 1.08998 * 109.46846 * 150.00369 * 1 2 3 25 25 H 1.09001 * 109.47294 * 209.97832 * 4 3 2 26 26 H 1.08996 * 109.46577 * 329.98289 * 4 3 2 27 27 H 0.97005 * 120.00171 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.11991 * 0.06420 * 14 13 3 29 29 H 1.08001 * 119.74077 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.47313 * 270.24998 * 17 16 15 31 31 H 1.09004 * 109.47349 * 30.24975 * 17 16 15 32 32 H 1.09004 * 109.47296 * 150.25003 * 17 16 15 33 33 H 1.08002 * 120.11529 * 179.77323 * 18 16 15 34 34 H 1.09000 * 109.47352 * 269.99643 * 21 20 2 35 35 H 1.08993 * 109.47159 * 29.99895 * 21 20 2 36 36 H 1.09004 * 109.46670 * 149.99917 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 1.8003 2.5287 0.0010 5 6 1.6416 3.0043 1.4221 6 1 1.8645 2.3382 2.2426 7 6 1.2119 4.2897 1.6750 8 7 0.9400 5.1006 0.6760 9 14 1.0159 4.8794 3.4366 10 1 2.2918 5.4798 3.9025 11 1 -0.0628 5.8980 3.5005 12 1 0.6631 3.7294 4.3073 13 6 3.6705 0.6456 -0.0006 14 6 4.9041 1.2997 -0.0014 15 6 6.0589 0.5697 -0.0023 16 6 6.0159 -0.8180 0.0026 17 6 7.3016 -1.6040 0.0072 18 6 4.8099 -1.4836 -0.0020 19 6 3.6215 -0.7602 -0.0009 20 7 2.2926 -1.1203 -0.0005 21 6 1.7939 -2.4978 -0.0006 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5140 24 1 -0.3633 -0.8900 -0.5138 25 1 2.5293 3.1555 -0.5127 26 1 0.8409 2.5916 -0.5124 27 1 0.6374 6.0049 0.8538 28 1 4.9453 2.3790 -0.0005 29 1 7.0128 1.0760 -0.0033 30 1 7.6154 -1.7934 -1.0193 31 1 8.0740 -1.0343 0.5240 32 1 7.1455 -2.5530 0.5204 33 1 4.7870 -2.5633 -0.0018 34 1 1.6706 -2.8397 1.0270 35 1 0.8332 -2.5364 -0.5140 36 1 2.5069 -3.1423 -0.5148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:23 Heat of formation + Delta-G solvation = 23.318990 kcal Electronic energy + Delta-G solvation = -17047.345679 eV Core-core repulsion = 14495.414388 eV Total energy + Delta-G solvation = -2551.931292 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20100 -38.44653 -35.73301 -34.08644 -32.93296 -31.44293 -30.22299 -29.26512 -26.90560 -25.89509 -24.17355 -22.83345 -21.41372 -19.57389 -18.44487 -17.44158 -17.22018 -16.45643 -16.29636 -15.76472 -14.97496 -14.67245 -14.41827 -14.38663 -14.14889 -13.90576 -13.78678 -13.25933 -13.15274 -13.03328 -12.87484 -12.72993 -12.57828 -12.55519 -12.08389 -11.86277 -11.64524 -11.47858 -11.35995 -10.56275 -10.15605 -8.82010 -8.35981 -8.00532 -6.27241 0.29384 0.78555 1.37342 1.39212 1.50128 1.88807 2.03987 2.43247 3.04953 3.13914 3.85368 3.94554 4.03371 4.11960 4.30514 4.39563 4.48776 4.55864 4.64596 4.68404 4.72463 4.80229 4.91511 4.95618 4.99353 5.11223 5.15009 5.21905 5.36337 5.39620 5.57605 5.76623 5.80311 5.84862 6.03022 6.13914 6.29899 6.45985 6.65106 6.84145 7.40275 8.93755 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.007250 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.098450 B = 3861.204810 C = 4668.827222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.051 3.949 3 C -0.169 4.169 4 C 0.100 3.900 5 C -0.516 4.516 6 H 0.043 0.957 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.268 1.268 13 C -0.143 4.143 14 C -0.087 4.087 15 C -0.155 4.155 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.135 4.135 19 C 0.086 3.914 20 N -0.489 5.489 21 C 0.075 3.925 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.093 0.907 25 H -0.013 1.013 26 H 0.006 0.994 27 H 0.264 0.736 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -17.258 -1.481 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.175 4.175 4 C 0.063 3.937 5 C -0.554 4.554 6 H 0.061 0.939 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.192 1.192 13 C -0.148 4.148 14 C -0.106 4.106 15 C -0.174 4.174 16 C -0.077 4.077 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.020 4.020 20 N -0.173 5.173 21 C -0.065 4.065 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.005 0.995 26 H 0.024 0.976 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.821 -17.432 -1.521 18.441 hybrid contribution -0.344 1.219 0.716 1.455 sum 5.477 -16.213 -0.805 17.132 Atomic orbital electron populations 1.20336 0.86364 1.03457 1.03006 1.20294 0.94439 0.84870 1.05774 1.20773 0.91531 0.95817 1.09411 1.17295 0.93859 0.86998 0.95545 1.21328 1.44032 0.97477 0.92567 0.93856 1.25863 0.95121 0.96757 1.01456 1.70080 1.46890 1.07348 1.32839 0.85525 0.78052 0.78180 0.79775 1.20096 1.20064 1.19200 1.19512 0.93689 0.93572 1.08050 1.20404 0.91738 0.99176 0.99258 1.20703 0.97358 0.94119 1.05224 1.19920 0.95605 0.93348 0.98822 1.20758 0.92345 0.99440 1.03176 1.20074 0.88317 0.99599 1.07604 1.18489 0.85741 0.93202 1.04614 1.43801 1.02951 1.06627 1.63960 1.22152 1.02080 0.78486 1.03777 0.90877 0.91485 0.88800 0.99518 0.97575 0.92672 0.88336 0.84363 0.90073 0.90696 0.90316 0.83683 0.90713 0.88400 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.50 9.82 71.24 0.70 -1.80 16 2 C 0.05 2.10 6.83 40.87 0.28 2.38 16 3 C -0.17 -8.42 5.50 -18.62 -0.10 -8.52 16 4 C 0.10 5.82 5.26 29.10 0.15 5.97 16 5 C -0.52 -31.27 9.09 25.60 0.23 -31.03 16 6 H 0.04 2.65 7.74 -2.91 -0.02 2.62 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 9 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 C -0.14 -6.59 6.35 -20.20 -0.13 -6.71 16 14 C -0.09 -3.71 10.05 22.23 0.22 -3.49 16 15 C -0.15 -5.14 9.62 22.03 0.21 -4.93 16 16 C -0.08 -2.13 5.88 -19.84 -0.12 -2.25 16 17 C -0.10 -1.82 9.99 71.24 0.71 -1.11 16 18 C -0.14 -4.02 9.60 22.37 0.21 -3.81 16 19 C 0.09 3.25 6.81 39.03 0.27 3.52 16 20 N -0.49 -16.75 3.18 -524.71 -1.67 -18.42 16 21 C 0.07 1.57 10.81 127.77 1.38 2.95 16 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.07 2.50 7.04 -2.38 -0.02 2.48 16 24 H 0.09 2.28 6.91 -2.39 -0.02 2.27 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 26 H 0.01 0.36 7.05 -2.39 -0.02 0.35 16 27 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 28 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.65 6.88 -2.39 -0.02 1.64 16 36 H 0.10 1.57 8.10 -2.38 -0.02 1.55 16 Total: -1.00 -74.74 303.33 6.19 -68.55 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.06 Total: 7.45 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 4.49 Total: -48.04 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.38 Total: -76.10 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.74 6.19 -68.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.871 kcal (2) G-P(sol) polarization free energy of solvation -74.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds