Wall clock time and date at job start Mon Mar 30 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36654 * 120.12324 * 2 1 4 4 C 1.38793 * 120.53259 * 180.02562 * 3 2 1 5 5 C 1.37788 * 120.66387 * 0.02634 * 4 3 2 6 6 C 1.50700 * 120.11135 * 179.97438 * 5 4 3 7 7 C 1.39091 * 119.77923 * 359.97438 * 5 4 3 8 8 C 1.39598 * 120.11400 * 180.02562 * 2 1 3 9 9 C 1.46487 * 134.03551 * 0.34350 * 8 2 1 10 10 C 1.50703 * 126.50084 * 359.92753 * 9 8 2 11 11 C 1.50695 * 109.47093 * 79.59929 * 10 9 8 12 12 H 1.08004 * 120.00028 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00234 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00144 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47440 * 90.00106 * 15 13 11 17 17 H 1.48498 * 109.47267 * 210.00171 * 15 13 11 18 18 H 1.48505 * 109.46966 * 330.00058 * 15 13 11 19 19 C 1.34235 * 107.00184 * 180.02562 * 9 8 2 20 20 N 1.36837 * 109.93667 * 359.59663 * 19 9 8 21 21 C 1.46500 * 125.06643 * 180.28572 * 20 19 9 22 22 H 1.09001 * 109.47297 * 95.84956 * 1 2 3 23 23 H 1.08996 * 109.47222 * 215.85562 * 1 2 3 24 24 H 1.09003 * 109.46977 * 335.85465 * 1 2 3 25 25 H 1.08000 * 119.73882 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.67206 * 180.02562 * 4 3 2 27 27 H 1.09008 * 109.46771 * 263.00116 * 6 5 4 28 28 H 1.08994 * 109.46993 * 22.99712 * 6 5 4 29 29 H 1.09003 * 109.47282 * 143.00386 * 6 5 4 30 30 H 1.09002 * 109.47117 * 199.59518 * 10 9 8 31 31 H 1.08997 * 109.46964 * 319.59662 * 10 9 8 32 32 H 0.97000 * 120.00116 * 180.02562 * 14 13 11 33 33 H 1.08002 * 125.03433 * 179.85669 * 19 9 8 34 34 H 1.09004 * 109.47025 * 97.07817 * 21 20 19 35 35 H 1.09001 * 109.46972 * 217.08108 * 21 20 19 36 36 H 1.09002 * 109.46919 * 337.08509 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1928 1.1820 0.0000 4 6 3.5807 1.1919 -0.0005 5 6 4.2918 0.0117 -0.0016 6 6 5.7986 0.0370 -0.0028 7 6 3.6144 -1.2030 -0.0016 8 6 2.2073 -1.2076 -0.0005 9 6 1.8073 -2.6167 -0.0075 10 6 0.3971 -3.1482 -0.0151 11 6 -0.1579 -3.0800 -1.4145 12 1 0.4497 -2.6904 -2.2180 13 6 -1.4412 -3.5150 -1.6692 14 7 -2.1812 -3.9890 -0.6907 15 14 -2.1293 -3.4299 -3.4037 16 1 -1.8245 -4.6945 -4.1199 17 1 -3.6006 -3.2373 -3.3436 18 1 -1.5100 -2.2900 -4.1265 19 6 2.9349 -3.3449 -0.0036 20 7 4.0247 -2.5174 -0.0038 21 6 5.4202 -2.9634 -0.0061 22 1 -0.3634 -0.1047 -1.0223 23 1 -0.3633 -0.8329 0.6019 24 1 -0.3633 0.9378 0.4204 25 1 1.6505 2.1160 0.0004 26 1 4.1085 2.1340 -0.0001 27 1 6.1632 -0.0816 -1.0232 28 1 6.1463 0.9888 0.3989 29 1 6.1762 -0.7778 0.6150 30 1 0.3972 -4.1836 0.3256 31 1 -0.2215 -2.5466 0.6508 32 1 -3.0839 -4.2954 -0.8700 33 1 2.9760 -4.4242 -0.0047 34 1 5.8036 -2.9519 -1.0264 35 1 6.0166 -2.2939 0.6138 36 1 5.4786 -3.9762 0.3926 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:07 Heat of formation + Delta-G solvation = 31.799716 kcal Electronic energy + Delta-G solvation = -17311.434826 eV Core-core repulsion = 14759.871286 eV Total energy + Delta-G solvation = -2551.563540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18747 -38.17941 -36.09061 -34.64683 -32.79262 -31.05464 -30.30790 -28.58182 -26.96208 -25.49119 -24.42081 -22.59905 -22.17984 -19.25298 -18.40424 -17.29027 -17.16354 -16.43330 -16.25502 -15.81542 -15.33613 -14.55439 -14.37532 -14.08988 -14.04662 -13.99406 -13.79491 -13.57548 -13.11236 -13.06627 -12.93245 -12.69919 -12.56779 -12.24588 -11.88171 -11.69511 -11.60187 -11.38080 -11.33231 -10.50684 -9.90933 -8.94039 -8.27137 -7.94658 -6.21931 0.33200 0.84488 1.38431 1.39368 1.50543 1.95319 2.11262 2.45361 3.04647 3.18082 3.90424 3.96584 4.08952 4.16375 4.26737 4.37269 4.51159 4.52861 4.64869 4.82024 4.84709 4.89063 4.89775 4.92734 5.03276 5.07378 5.24202 5.32801 5.40233 5.54304 5.68388 5.79769 5.81748 5.92522 6.09599 6.13878 6.33999 6.48831 6.66939 6.88847 7.44602 8.96873 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.007375 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.984586 B = 3795.723941 C = 4354.537206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.055 4.055 3 C -0.162 4.162 4 C -0.103 4.103 5 C -0.117 4.117 6 C -0.107 4.107 7 C 0.085 3.915 8 C -0.135 4.135 9 C -0.158 4.158 10 C 0.095 3.905 11 C -0.505 4.505 12 H 0.041 0.959 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.272 1.272 19 C 0.018 3.982 20 N -0.488 5.488 21 C 0.070 3.930 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.073 0.927 30 H -0.002 1.002 31 H 0.006 0.994 32 H 0.263 0.737 33 H 0.177 0.823 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.215 7.546 1.718 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.055 4.055 3 C -0.181 4.181 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.163 4.163 7 C -0.022 4.022 8 C -0.140 4.140 9 C -0.165 4.165 10 C 0.058 3.942 11 C -0.543 4.543 12 H 0.059 0.941 13 C -0.189 4.189 14 N -0.571 5.571 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.197 1.197 19 C -0.105 4.105 20 N -0.172 5.172 21 C -0.070 4.070 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.156 0.844 26 H 0.172 0.828 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.401 7.304 1.753 18.039 hybrid contribution -1.121 -0.526 -0.824 1.487 sum 15.280 6.778 0.930 16.742 Atomic orbital electron populations 1.20701 0.91769 1.01789 1.01661 1.19364 0.95855 0.92050 0.98275 1.20715 0.94940 0.96712 1.05779 1.20988 0.93330 0.97452 1.00445 1.19207 0.97230 0.89185 1.06311 1.20918 0.88815 1.03972 1.02574 1.18389 0.92749 0.85951 1.05097 1.19363 0.93110 0.93414 1.08159 1.20970 0.96056 0.91786 1.07664 1.17440 0.87398 0.93668 0.95724 1.21228 0.98305 1.40451 0.94344 0.94100 1.25756 0.97259 0.95157 1.00721 1.70067 1.09883 1.43831 1.33298 0.85636 0.77580 0.78625 0.80372 1.19827 1.20417 1.19653 1.21699 0.84983 0.96458 1.07396 1.43808 1.06856 1.02997 1.63546 1.22407 0.78107 1.02698 1.03802 0.92857 0.93216 0.90382 0.84407 0.82750 0.91028 0.89529 0.90882 0.98409 0.97566 0.92808 0.80566 0.90765 0.88192 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.35 9.51 71.23 0.68 -3.67 16 2 C -0.05 -2.27 5.87 -19.91 -0.12 -2.39 16 3 C -0.16 -5.33 9.60 22.03 0.21 -5.12 16 4 C -0.10 -2.90 9.64 22.30 0.22 -2.69 16 5 C -0.12 -3.44 5.89 -19.77 -0.12 -3.55 16 6 C -0.11 -2.04 9.30 71.24 0.66 -1.38 16 7 C 0.09 3.15 6.74 39.03 0.26 3.41 16 8 C -0.14 -6.05 6.15 -20.20 -0.12 -6.17 16 9 C -0.16 -7.61 5.50 -18.63 -0.10 -7.72 16 10 C 0.09 5.31 4.76 29.10 0.14 5.45 16 11 C -0.50 -29.77 9.06 25.60 0.23 -29.54 16 12 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 13 C 0.01 0.50 5.46 84.65 0.46 0.96 16 14 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 15 Si 0.95 45.70 29.54 68.60 2.03 47.73 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 C 0.02 0.72 11.19 83.00 0.93 1.65 16 20 N -0.49 -16.28 3.18 -539.26 -1.71 -18.00 16 21 C 0.07 1.43 10.31 127.77 1.32 2.75 16 22 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.05 2.40 5.51 -2.39 -0.01 2.38 16 24 H 0.08 2.68 8.04 -2.39 -0.02 2.66 16 25 H 0.14 3.72 8.05 -2.91 -0.02 3.69 16 26 H 0.15 3.06 8.05 -2.91 -0.02 3.04 16 27 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.09 1.27 8.03 -2.39 -0.02 1.25 16 29 H 0.07 1.24 5.08 -2.39 -0.01 1.22 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.01 0.38 5.89 -2.39 -0.01 0.36 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.18 6.12 8.06 -2.91 -0.02 6.10 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.63 5.18 -2.39 -0.01 1.62 16 36 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 Total: -1.00 -71.92 294.91 6.32 -65.60 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.07 Total: 9.28 kcal Atomic # 6 Polarization: -52.65 SS G_CDS: 4.65 Total: -48.00 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.43 Total: -74.60 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.92 6.32 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.402 kcal (2) G-P(sol) polarization free energy of solvation -71.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds