Wall clock time and date at job start Mon Mar 30 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36840 * 125.02600 * 2 1 4 4 H 0.96993 * 125.06687 * 359.97438 * 3 2 1 5 5 C 1.37698 * 109.86831 * 179.81531 * 3 2 1 6 6 C 1.40695 * 107.15517 * 0.43020 * 5 3 2 7 7 C 1.34235 * 125.03464 * 180.29752 * 2 1 3 8 8 C 1.50697 * 126.49954 * 359.96879 * 7 2 1 9 9 C 1.50699 * 109.47118 * 95.61006 * 8 7 2 10 10 H 1.08000 * 119.99951 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99855 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99927 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99790 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47089 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46950 * 120.00048 * 13 11 9 16 16 H 1.48500 * 109.46981 * 240.00237 * 13 11 9 17 17 C 1.39595 * 119.92988 * 179.72046 * 6 5 3 18 18 C 1.50701 * 120.12013 * 180.02562 * 17 6 5 19 19 C 1.36665 * 119.76043 * 359.97438 * 17 6 5 20 20 C 1.38786 * 120.53063 * 0.02562 * 19 17 6 21 21 C 1.37785 * 120.66582 * 359.97438 * 20 19 17 22 22 C 1.50695 * 120.11030 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47161 * 269.69899 * 1 2 3 24 24 H 1.09002 * 109.46400 * 149.70118 * 1 2 3 25 25 H 1.09000 * 109.47168 * 29.70554 * 1 2 3 26 26 H 1.09001 * 109.47151 * 215.61059 * 8 7 2 27 27 H 1.09004 * 109.47271 * 335.60791 * 8 7 2 28 28 H 0.97008 * 119.99424 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46680 * 83.91722 * 18 17 6 30 30 H 1.08997 * 109.47182 * 203.92121 * 18 17 6 31 31 H 1.09004 * 109.46843 * 323.92366 * 18 17 6 32 32 H 1.08006 * 119.72817 * 179.97438 * 19 17 6 33 33 H 1.07999 * 119.66702 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.47470 * 89.99983 * 22 21 20 35 35 H 1.09007 * 109.47271 * 209.99743 * 22 21 20 36 36 H 1.09006 * 109.47334 * 329.99911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1206 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0042 6 6 3.6706 -0.6455 -0.0032 7 6 2.2776 -1.0991 -0.0057 8 6 1.8003 -2.5285 -0.0125 9 6 1.7723 -3.0420 -1.4290 10 1 2.0700 -2.3976 -2.2430 11 6 1.3667 -4.3345 -1.6858 12 7 1.0038 -5.1190 -0.6946 13 14 1.3327 -4.9713 -3.4416 14 1 1.7851 -3.9003 -4.3654 15 1 2.2380 -6.1424 -3.5610 16 1 -0.0515 -5.3776 -3.7940 17 6 4.9039 -1.2994 -0.0069 18 6 4.9615 -2.8053 -0.0154 19 6 6.0590 -0.5690 -0.0040 20 6 6.0159 0.8182 0.0033 21 6 4.8095 1.4838 0.0071 22 6 4.7774 2.9904 0.0156 23 1 -0.3633 -0.0054 1.0277 24 1 -0.3632 -0.8873 -0.5185 25 1 -0.3633 0.8926 -0.5092 26 1 2.4780 -3.1407 0.5826 27 1 0.7976 -2.5788 0.4122 28 1 0.7181 -6.0283 -0.8754 29 1 4.8664 -3.1667 -1.0394 30 1 5.9140 -3.1348 0.3994 31 1 4.1453 -3.2035 0.5876 32 1 7.0129 -1.0754 -0.0065 33 1 6.9373 1.3816 0.0051 34 1 4.7695 3.3595 -1.0100 35 1 3.8798 3.3318 0.5314 36 1 5.6594 3.3698 0.5315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082595253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:33 Heat of formation + Delta-G solvation = 29.944750 kcal Electronic energy + Delta-G solvation = -17299.197129 eV Core-core repulsion = 14747.553151 eV Total energy + Delta-G solvation = -2551.643977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75741 -36.89144 -34.18407 -32.78393 -30.89587 -30.08890 -28.80424 -27.45956 -25.58094 -24.18722 -22.70464 -21.33818 -20.08312 -17.89470 -16.48622 -16.18976 -15.45612 -14.57663 -14.42784 -14.33553 -13.89179 -13.20156 -12.73434 -12.66744 -12.54010 -12.23222 -12.17320 -11.92950 -11.83716 -11.53930 -11.35883 -11.08821 -10.85744 -10.70191 -10.47091 -10.37825 -9.81792 -9.60384 -9.33794 -8.40766 -8.31655 -7.50304 -6.66729 -5.93371 -3.96592 1.69913 2.22226 3.33047 3.39979 3.43248 3.51131 3.71381 4.42879 4.54729 5.16742 5.25942 5.38358 5.43464 5.53798 5.58835 5.71070 5.76382 5.84767 5.97373 6.08202 6.08883 6.26426 6.34024 6.43529 6.55750 6.57506 6.62450 6.86160 6.95683 7.04089 7.32197 7.45116 7.60465 7.65857 7.84164 8.00372 8.03552 8.22596 8.48924 9.09054 9.66270 11.14259 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.007740 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.750895 B = 3616.903134 C = 4248.497681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.031 3.969 3 N -0.599 5.599 4 H 0.403 0.597 5 C 0.101 3.899 6 C -0.098 4.098 7 C -0.103 4.103 8 C 0.078 3.922 9 C -0.497 4.497 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.017 4.017 18 C -0.116 4.116 19 C -0.169 4.169 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.102 4.102 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.024 0.976 28 H 0.259 0.741 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 12.038 2.336 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 N -0.203 5.203 4 H 0.238 0.762 5 C -0.007 4.007 6 C -0.103 4.103 7 C -0.109 4.109 8 C 0.041 3.959 9 C -0.536 4.536 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.017 4.017 18 C -0.172 4.172 19 C -0.189 4.189 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.159 4.159 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.821 11.947 2.368 13.099 hybrid contribution -0.133 0.112 -1.062 1.076 sum 4.687 12.060 1.306 13.004 Atomic orbital electron populations 1.20324 0.88378 1.03219 1.01953 1.20010 0.93078 0.85211 1.08965 1.41533 1.03815 1.07546 1.67413 0.76209 1.17982 0.84194 0.94065 1.04446 1.19090 0.93658 0.91215 1.06376 1.20988 0.89274 0.96809 1.03790 1.17851 0.96124 0.84670 0.97225 1.21113 1.43237 0.96833 0.92398 0.92793 1.24963 0.95691 0.96934 0.96681 1.69962 1.45502 1.07508 1.30629 0.86615 0.77562 0.78883 0.85485 1.19828 1.21048 1.21129 1.19200 0.90969 0.96132 0.95417 1.20907 1.01727 0.90931 1.03645 1.20369 0.97238 0.93528 1.07748 1.20474 0.95592 0.94164 1.01926 1.18646 0.90522 0.94459 1.08902 1.20580 1.01703 0.92231 1.01355 0.91796 0.88886 0.92848 0.94908 0.95730 0.93109 0.90511 0.93225 0.89784 0.86855 0.86802 0.92128 0.92977 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.95 36.01 0.36 -0.97 16 2 C 0.03 0.61 7.08 -81.77 -0.58 0.03 16 3 N -0.60 -10.22 6.07 -6.95 -0.04 -10.27 16 4 H 0.40 5.38 8.88 -40.82 -0.36 5.01 16 5 C 0.10 1.90 6.95 -83.99 -0.58 1.31 16 6 C -0.10 -2.11 6.15 -105.14 -0.65 -2.76 16 7 C -0.10 -2.33 5.50 -102.71 -0.57 -2.89 16 8 C 0.08 2.01 4.54 -29.04 -0.13 1.88 16 9 C -0.50 -13.74 9.09 -34.44 -0.31 -14.06 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 C -0.02 -0.33 5.87 -104.68 -0.61 -0.95 16 18 C -0.12 -2.28 9.55 36.01 0.34 -1.93 16 19 C -0.17 -2.89 9.60 -39.95 -0.38 -3.28 16 20 C -0.10 -1.60 9.67 -39.54 -0.38 -1.99 16 21 C -0.12 -1.97 5.89 -104.47 -0.62 -2.59 16 22 C -0.10 -1.23 10.02 36.00 0.36 -0.87 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.70 7.53 -51.93 -0.39 1.31 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.89 5.62 -51.93 -0.29 0.59 16 27 H 0.02 0.65 7.43 -51.93 -0.39 0.27 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.08 1.83 5.41 -51.93 -0.28 1.55 16 32 H 0.11 1.65 8.05 -52.48 -0.42 1.23 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.58 8.00 -51.92 -0.42 0.16 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 299.25 15.07 4.51 4.51 Total: -1.00 -30.57 299.25 -8.71 -39.28 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.04 Total: 2.79 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.85 Total: -27.53 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.69 Total: -35.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.57 -8.71 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.225 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds