Wall clock time and date at job start Mon Mar 30 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36840 * 125.02600 * 2 1 4 4 H 0.96993 * 125.06687 * 359.97438 * 3 2 1 5 5 C 1.37698 * 109.86831 * 179.81531 * 3 2 1 6 6 C 1.40695 * 107.15517 * 0.43020 * 5 3 2 7 7 C 1.34235 * 125.03464 * 180.29752 * 2 1 3 8 8 C 1.50697 * 126.49954 * 359.96879 * 7 2 1 9 9 C 1.50699 * 109.47118 * 95.61006 * 8 7 2 10 10 H 1.08000 * 119.99951 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99855 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99927 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99790 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47089 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46950 * 120.00048 * 13 11 9 16 16 H 1.48500 * 109.46981 * 240.00237 * 13 11 9 17 17 C 1.39595 * 119.92988 * 179.72046 * 6 5 3 18 18 C 1.50701 * 120.12013 * 180.02562 * 17 6 5 19 19 C 1.36665 * 119.76043 * 359.97438 * 17 6 5 20 20 C 1.38786 * 120.53063 * 0.02562 * 19 17 6 21 21 C 1.37785 * 120.66582 * 359.97438 * 20 19 17 22 22 C 1.50695 * 120.11030 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47161 * 269.69899 * 1 2 3 24 24 H 1.09002 * 109.46400 * 149.70118 * 1 2 3 25 25 H 1.09000 * 109.47168 * 29.70554 * 1 2 3 26 26 H 1.09001 * 109.47151 * 215.61059 * 8 7 2 27 27 H 1.09004 * 109.47271 * 335.60791 * 8 7 2 28 28 H 0.97008 * 119.99424 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46680 * 83.91722 * 18 17 6 30 30 H 1.08997 * 109.47182 * 203.92121 * 18 17 6 31 31 H 1.09004 * 109.46843 * 323.92366 * 18 17 6 32 32 H 1.08006 * 119.72817 * 179.97438 * 19 17 6 33 33 H 1.07999 * 119.66702 * 180.02562 * 20 19 17 34 34 H 1.08996 * 109.47470 * 89.99983 * 22 21 20 35 35 H 1.09007 * 109.47271 * 209.99743 * 22 21 20 36 36 H 1.09006 * 109.47334 * 329.99911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1206 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0042 6 6 3.6706 -0.6455 -0.0032 7 6 2.2776 -1.0991 -0.0057 8 6 1.8003 -2.5285 -0.0125 9 6 1.7723 -3.0420 -1.4290 10 1 2.0700 -2.3976 -2.2430 11 6 1.3667 -4.3345 -1.6858 12 7 1.0038 -5.1190 -0.6946 13 14 1.3327 -4.9713 -3.4416 14 1 1.7851 -3.9003 -4.3654 15 1 2.2380 -6.1424 -3.5610 16 1 -0.0515 -5.3776 -3.7940 17 6 4.9039 -1.2994 -0.0069 18 6 4.9615 -2.8053 -0.0154 19 6 6.0590 -0.5690 -0.0040 20 6 6.0159 0.8182 0.0033 21 6 4.8095 1.4838 0.0071 22 6 4.7774 2.9904 0.0156 23 1 -0.3633 -0.0054 1.0277 24 1 -0.3632 -0.8873 -0.5185 25 1 -0.3633 0.8926 -0.5092 26 1 2.4780 -3.1407 0.5826 27 1 0.7976 -2.5788 0.4122 28 1 0.7181 -6.0283 -0.8754 29 1 4.8664 -3.1667 -1.0394 30 1 5.9140 -3.1348 0.3994 31 1 4.1453 -3.2035 0.5876 32 1 7.0129 -1.0754 -0.0065 33 1 6.9373 1.3816 0.0051 34 1 4.7695 3.3595 -1.0100 35 1 3.8798 3.3318 0.5314 36 1 5.6594 3.3698 0.5315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:33 Heat of formation + Delta-G solvation = 13.210377 kcal Electronic energy + Delta-G solvation = -17299.922785 eV Core-core repulsion = 14747.553151 eV Total energy + Delta-G solvation = -2552.369634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18591 -38.25615 -35.85803 -34.56844 -32.47732 -31.59055 -30.13045 -29.17484 -27.09880 -25.57683 -24.63725 -22.74095 -21.43312 -19.51270 -18.38165 -17.85077 -16.83415 -16.46057 -15.90520 -15.74917 -15.23365 -14.40313 -14.30244 -14.17415 -14.05827 -13.94884 -13.62327 -13.37527 -13.20070 -13.05448 -12.84063 -12.73006 -12.58628 -12.41225 -11.97482 -11.75691 -11.63316 -11.45235 -11.33717 -10.48657 -9.92196 -8.89682 -8.29675 -7.96178 -6.20596 0.31572 0.84421 1.38095 1.39462 1.51710 1.92260 2.35230 2.45899 3.04786 3.19048 3.92576 4.02032 4.14467 4.30760 4.42514 4.44358 4.52089 4.75705 4.78810 4.81530 4.82160 4.86211 4.90928 4.98901 5.13664 5.17396 5.21410 5.35543 5.41806 5.55240 5.68152 5.78924 5.83225 5.94117 6.06821 6.17545 6.36522 6.45587 6.88770 6.94012 7.45967 8.97849 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.007740 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.750895 B = 3616.903134 C = 4248.497681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 N -0.582 5.582 4 H 0.423 0.577 5 C 0.087 3.913 6 C -0.133 4.133 7 C -0.162 4.162 8 C 0.096 3.904 9 C -0.504 4.504 10 H 0.039 0.961 11 C 0.010 3.990 12 N -0.929 5.929 13 Si 0.951 3.049 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.275 1.275 17 C -0.058 4.058 18 C -0.105 4.105 19 C -0.159 4.159 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.100 4.100 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.006 0.994 27 H 0.001 0.999 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 14.903 1.688 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 N -0.188 5.188 4 H 0.262 0.738 5 C -0.021 4.021 6 C -0.138 4.138 7 C -0.168 4.168 8 C 0.059 3.941 9 C -0.542 4.542 10 H 0.058 0.942 11 C -0.188 4.188 12 N -0.570 5.570 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.201 1.201 17 C -0.059 4.059 18 C -0.161 4.161 19 C -0.178 4.178 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.156 4.156 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.073 14.851 1.721 16.137 hybrid contribution -0.463 -0.693 -0.812 1.163 sum 5.610 14.158 0.909 15.257 Atomic orbital electron populations 1.20365 0.86372 1.03638 1.03243 1.20294 0.94325 0.85211 1.06006 1.41389 1.03128 1.07900 1.66397 0.73758 1.18290 0.85530 0.93229 1.05079 1.19373 0.93490 0.93137 1.07776 1.20782 0.91311 0.95990 1.08711 1.17456 0.94097 0.87014 0.95571 1.21260 1.42906 0.96987 0.93034 0.94231 1.25731 0.95282 0.97083 1.00698 1.70074 1.46329 1.07887 1.32690 0.85610 0.77968 0.78217 0.80562 1.19676 1.20366 1.20086 1.19363 0.91950 0.95983 0.98566 1.20729 1.01890 0.91829 1.01665 1.20722 0.97080 0.94560 1.05480 1.20976 0.97136 0.93694 1.00463 1.19204 0.89445 0.96878 1.06325 1.20665 1.03465 0.88819 1.02690 0.89985 0.91591 0.89211 0.97611 0.98045 0.92843 0.92847 0.90272 0.93146 0.84348 0.82716 0.90818 0.91991 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 9.95 71.24 0.71 -1.82 16 2 C 0.05 1.87 7.08 40.86 0.29 2.16 16 3 N -0.58 -18.93 6.07 -175.90 -1.07 -20.00 16 4 H 0.42 10.01 8.88 -92.71 -0.82 9.19 16 5 C 0.09 3.14 6.95 39.03 0.27 3.41 16 6 C -0.13 -5.85 6.15 -20.20 -0.12 -5.98 16 7 C -0.16 -7.69 5.50 -18.63 -0.10 -7.79 16 8 C 0.10 5.29 4.54 29.10 0.13 5.42 16 9 C -0.50 -29.39 9.09 25.60 0.23 -29.16 16 10 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 11 C 0.01 0.56 5.46 84.66 0.46 1.02 16 12 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 13 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 14 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 17 C -0.06 -2.37 5.87 -19.90 -0.12 -2.48 16 18 C -0.10 -4.36 9.55 71.24 0.68 -3.68 16 19 C -0.16 -5.14 9.60 22.03 0.21 -4.93 16 20 C -0.10 -2.87 9.67 22.29 0.22 -2.65 16 21 C -0.12 -3.35 5.89 -19.77 -0.12 -3.47 16 22 C -0.10 -1.92 10.02 71.23 0.71 -1.21 16 23 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.07 2.49 7.53 -2.39 -0.02 2.47 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.01 0.35 5.62 -2.39 -0.01 0.33 16 27 H 0.00 0.08 7.43 -2.39 -0.02 0.06 16 28 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 29 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 2.67 8.03 -2.39 -0.02 2.65 16 31 H 0.05 2.40 5.41 -2.38 -0.01 2.39 16 32 H 0.14 3.65 8.05 -2.91 -0.02 3.63 16 33 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.09 8.00 -2.38 -0.02 1.07 16 36 H 0.09 1.31 8.09 -2.38 -0.02 1.29 16 Total: -1.00 -70.28 299.25 4.96 -65.32 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.26 Total: 14.43 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 3.46 Total: -51.17 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -0.78 Total: -76.00 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.28 4.96 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.530 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds