Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38892 * 125.35258 * 2 1 4 4 C 1.40890 * 126.93429 * 359.95956 * 3 2 1 5 5 H 1.08001 * 120.00781 * 142.85495 * 4 3 2 6 6 C 1.39741 * 119.99442 * 322.85574 * 4 3 2 7 7 N 1.31051 * 120.00615 * 339.78006 * 6 4 3 8 8 Si 1.86803 * 119.99797 * 160.05674 * 6 4 3 9 9 H 1.48497 * 109.47118 * 59.99954 * 8 6 4 10 10 H 1.48506 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46991 * 299.99805 * 8 6 4 12 12 C 1.47681 * 106.13967 * 180.22316 * 3 2 1 13 13 C 1.40381 * 106.05626 * 359.63317 * 12 3 2 14 14 C 1.39085 * 119.30145 * 180.14983 * 13 12 3 15 15 C 1.50698 * 120.01332 * 180.24040 * 14 13 12 16 16 C 1.37912 * 119.96776 * 359.56643 * 14 13 12 17 17 C 1.38628 * 120.62145 * 0.61980 * 16 14 13 18 18 C 1.37920 * 120.25466 * 359.58584 * 17 16 14 19 19 C 1.50700 * 120.15705 * 180.02562 * 18 17 16 20 20 N 1.35638 * 125.35669 * 179.97438 * 2 1 3 21 21 C 1.46506 * 124.68752 * 0.03167 * 20 2 1 22 22 H 1.09001 * 109.46389 * 95.14922 * 1 2 3 23 23 H 1.08996 * 109.46946 * 215.15021 * 1 2 3 24 24 H 1.08994 * 109.47042 * 335.15261 * 1 2 3 25 25 H 0.96996 * 120.00407 * 185.10937 * 7 6 4 26 26 H 1.09007 * 109.47069 * 82.65176 * 15 14 13 27 27 H 1.09006 * 109.46976 * 202.64240 * 15 14 13 28 28 H 1.09000 * 109.47466 * 322.64794 * 15 14 13 29 29 H 1.07991 * 119.68950 * 180.20654 * 16 14 13 30 30 H 1.07997 * 119.87710 * 179.61381 * 17 16 14 31 31 H 1.08997 * 109.47451 * 264.40450 * 19 18 17 32 32 H 1.09003 * 109.47074 * 24.40695 * 19 18 17 33 33 H 1.08995 * 109.47361 * 144.40217 * 19 18 17 34 34 H 1.08995 * 109.47070 * 98.74524 * 21 20 2 35 35 H 1.09001 * 109.46811 * 218.73969 * 21 20 2 36 36 H 1.09000 * 109.47111 * 338.73928 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.1328 0.0000 4 6 1.8820 2.4749 -0.0008 5 1 2.4275 3.2165 0.5640 6 6 0.7509 2.8466 -0.7324 7 7 0.3228 2.0850 -1.7092 8 14 -0.1464 4.4330 -0.3230 9 1 0.7800 5.5820 -0.4864 10 1 -1.3042 4.5973 -1.2385 11 1 -0.6282 4.3811 1.0807 12 6 3.7052 0.6468 -0.0055 13 6 3.6279 -0.7548 0.0002 14 6 4.8015 -1.5013 0.0000 15 6 4.7373 -3.0069 0.0006 16 6 6.0239 -0.8629 -0.0148 17 6 6.0977 0.5214 -0.0167 18 6 4.9450 1.2787 -0.0123 19 6 5.0277 2.7834 -0.0150 20 7 2.2919 -1.1062 0.0005 21 6 1.7919 -2.4833 0.0004 22 1 -0.3632 -0.0922 -1.0236 23 1 -0.3633 -0.8402 0.5916 24 1 -0.3633 0.9325 0.4318 25 1 -0.4165 2.3782 -2.2645 26 1 4.5900 -3.3647 -1.0185 27 1 5.6696 -3.4102 0.3960 28 1 3.9059 -3.3349 0.6246 29 1 6.9323 -1.4469 -0.0183 30 1 7.0614 1.0088 -0.0221 31 1 4.9525 3.1533 1.0076 32 1 5.9801 3.0942 -0.4446 33 1 4.2105 3.1912 -0.6098 34 1 1.8152 -2.8783 -1.0152 35 1 2.4211 -3.0983 0.6439 36 1 0.7675 -2.4979 0.3726 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = 29.820145 kcal Electronic energy + Delta-G solvation = -17712.897954 eV Core-core repulsion = 15161.248574 eV Total energy + Delta-G solvation = -2551.649380 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69641 -38.00680 -35.94240 -34.37655 -32.17292 -31.29610 -30.24912 -28.65015 -27.01095 -25.92188 -24.66686 -22.18982 -21.10232 -20.36467 -18.11287 -16.88962 -16.66732 -16.40647 -16.06141 -15.61094 -14.89315 -14.51368 -14.33857 -14.22488 -13.80734 -13.71027 -13.59033 -13.41113 -13.23365 -13.01182 -12.74480 -12.61213 -12.45350 -12.35694 -12.08403 -11.85768 -11.49004 -11.39516 -11.20557 -10.63069 -9.61083 -8.52618 -8.36546 -7.96457 -5.86419 0.56720 1.05484 1.39945 1.43950 1.52008 2.25401 2.38912 2.50408 3.08066 3.49374 4.07740 4.12367 4.27344 4.38496 4.41773 4.54607 4.57415 4.63499 4.67616 4.75091 4.89753 4.94436 4.95991 5.07450 5.13113 5.23489 5.27651 5.34256 5.39916 5.54099 5.59920 5.74384 5.91938 6.04267 6.18500 6.39845 6.69086 6.86769 7.10559 7.25949 7.35521 8.70899 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.009555 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.599719 B = 2929.852148 C = 3910.469525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.067 4.067 3 C 0.004 3.996 4 C -0.472 4.472 5 H 0.063 0.937 6 C 0.039 3.961 7 N -0.848 5.848 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.267 1.267 12 C -0.164 4.164 13 C 0.078 3.922 14 C -0.134 4.134 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.183 4.183 18 C -0.057 4.057 19 C -0.101 4.101 20 N -0.482 5.482 21 C 0.075 3.925 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.274 0.726 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -6.935 2.715 8.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.171 4.171 3 C -0.001 4.001 4 C -0.505 4.505 5 H 0.081 0.919 6 C -0.171 4.171 7 N -0.479 5.479 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.192 1.192 12 C -0.170 4.170 13 C -0.030 4.030 14 C -0.137 4.137 15 C -0.159 4.159 16 C -0.130 4.130 17 C -0.203 4.203 18 C -0.057 4.057 19 C -0.157 4.157 20 N -0.167 5.167 21 C -0.066 4.066 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.243 -7.273 2.576 8.805 hybrid contribution -0.727 0.979 -0.177 1.232 sum 3.516 -6.294 2.399 7.599 Atomic orbital electron populations 1.19709 0.88631 0.99513 0.99849 1.20705 0.93032 0.84992 1.18396 1.18105 0.88076 0.92948 1.00974 1.18563 1.10122 0.93284 1.28560 0.91885 1.26185 0.96790 1.00395 0.93694 1.70004 1.24927 1.38486 1.14459 0.85661 0.78240 0.79310 0.78860 1.19297 1.20049 1.19222 1.19867 0.94747 0.93243 1.09180 1.18370 0.84959 0.93850 1.05853 1.19163 0.90048 0.96401 1.08130 1.20863 1.03373 0.89727 1.01925 1.20808 0.96226 0.94218 1.01784 1.20830 0.96885 0.94148 1.08440 1.19576 0.91545 0.96288 0.98319 1.20678 1.01944 0.91570 1.01544 1.43162 1.03107 1.05959 1.64460 1.22168 1.01199 0.80671 1.02581 0.93358 0.93299 0.93505 0.91649 0.91785 0.89758 0.91478 0.83617 0.84734 0.92034 0.90598 0.92816 0.92130 0.88643 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.91 8.09 71.24 0.58 -0.33 16 2 C -0.07 -3.44 6.61 42.13 0.28 -3.16 16 3 C 0.00 0.25 5.67 -19.98 -0.11 0.13 16 4 C -0.47 -26.45 7.61 23.28 0.18 -26.27 16 5 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 6 C 0.04 2.06 4.00 85.17 0.34 2.40 16 7 N -0.85 -46.17 10.61 21.80 0.23 -45.94 16 8 Si 0.96 40.99 29.61 68.60 2.03 43.02 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 10 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 C -0.16 -8.49 6.15 -20.04 -0.12 -8.62 16 13 C 0.08 3.63 6.72 38.87 0.26 3.89 16 14 C -0.13 -5.04 5.90 -19.74 -0.12 -5.16 16 15 C -0.10 -2.79 9.23 71.24 0.66 -2.13 16 16 C -0.11 -3.86 9.64 22.29 0.21 -3.64 16 17 C -0.18 -6.88 9.67 22.29 0.22 -6.66 16 18 C -0.06 -2.57 5.90 -19.72 -0.12 -2.68 16 19 C -0.10 -4.12 9.23 71.24 0.66 -3.47 16 20 N -0.48 -21.70 3.15 -521.48 -1.64 -23.34 16 21 C 0.07 2.42 10.03 127.77 1.28 3.70 16 22 H 0.05 2.32 7.37 -2.39 -0.02 2.30 16 23 H 0.05 1.89 6.98 -2.39 -0.02 1.87 16 24 H 0.05 2.29 6.73 -2.39 -0.02 2.28 16 25 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 1.82 8.03 -2.38 -0.02 1.80 16 28 H 0.07 1.72 5.01 -2.39 -0.01 1.71 16 29 H 0.15 3.82 8.05 -2.92 -0.02 3.79 16 30 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 33 H 0.05 2.50 6.45 -2.39 -0.02 2.48 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.57 5.17 -2.39 -0.01 2.56 16 36 H 0.08 2.46 6.69 -2.39 -0.02 2.44 16 Total: -1.00 -65.66 285.53 5.89 -59.77 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.08 Total: 18.50 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 4.19 Total: -52.00 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.41 Total: -69.28 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -65.66 5.89 -59.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.586 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds