Wall clock time and date at job start Mon Mar 30 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47025 * 119.99557 * 3 2 1 6 6 H 1.48500 * 109.46788 * 239.99551 * 3 2 1 7 7 C 1.37882 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 173.28732 * 7 2 1 9 9 C 1.50696 * 120.00193 * 353.28365 * 7 2 1 10 10 C 1.52999 * 115.54975 * 294.41715 * 9 7 2 11 11 N 1.46902 * 109.47446 * 306.40488 * 10 9 7 12 12 C 1.47898 * 111.00234 * 164.42071 * 11 10 9 13 13 C 1.54604 * 102.63107 * 94.67594 * 12 11 10 14 14 C 1.51574 * 102.81360 * 25.60095 * 13 12 11 15 15 C 1.37921 * 131.56087 * 163.77952 * 14 13 12 16 16 C 1.38304 * 120.07835 * 180.27377 * 15 14 13 17 17 C 1.38307 * 119.88315 * 0.02562 * 16 15 14 18 18 C 1.37907 * 120.26458 * 359.84879 * 17 16 15 19 19 C 1.38956 * 107.95152 * 343.80140 * 14 13 12 20 20 C 1.52991 * 117.50026 * 148.74330 * 9 7 2 21 21 C 1.53001 * 117.49662 * 80.08196 * 9 7 2 22 22 H 0.97008 * 119.99900 * 176.79913 * 1 2 3 23 23 H 1.09002 * 109.47003 * 66.40563 * 10 9 7 24 24 H 1.09003 * 109.47361 * 186.39870 * 10 9 7 25 25 H 1.09002 * 110.77452 * 212.96500 * 12 11 10 26 26 H 1.08998 * 110.77965 * 336.20535 * 12 11 10 27 27 H 1.09004 * 110.73949 * 143.92611 * 13 12 11 28 28 H 1.08992 * 110.74354 * 267.26368 * 13 12 11 29 29 H 1.07998 * 119.95915 * 0.26444 * 15 14 13 30 30 H 1.08005 * 120.05744 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.86787 * 179.86738 * 17 16 15 32 32 H 1.07996 * 119.90227 * 180.02562 * 18 17 16 33 33 H 1.09001 * 117.50167 * 0.02562 * 20 9 7 34 34 H 1.09004 * 117.50244 * 145.02143 * 20 9 7 35 35 H 1.09004 * 117.49860 * 214.97597 * 21 9 7 36 36 H 1.08993 * 117.50092 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1088 9 6 1.2588 -2.4946 0.1537 10 6 0.5671 -2.7038 1.5023 11 7 1.5416 -2.5203 2.5862 12 6 0.8605 -2.3445 3.8872 13 6 0.8496 -3.7805 4.4599 14 6 2.0378 -4.4249 3.7740 15 6 2.7421 -5.5771 4.0545 16 6 3.8116 -5.9467 3.2593 17 6 4.1742 -5.1586 2.1821 18 6 3.4716 -4.0069 1.8959 19 6 2.3905 -3.6291 2.6908 20 6 1.8392 -3.7278 -0.5413 21 6 0.5721 -3.0658 -1.0885 22 1 -0.4850 -0.8388 -0.0469 23 1 -0.2400 -1.9796 1.6129 24 1 0.1582 -3.7132 1.5483 25 1 1.4279 -1.6747 4.5333 26 1 -0.1548 -1.9741 3.7453 27 1 0.9891 -3.7660 5.5409 28 1 -0.0744 -4.2946 4.1956 29 1 2.4582 -6.1913 4.8963 30 1 4.3626 -6.8493 3.4790 31 1 5.0107 -5.4463 1.5626 32 1 3.7595 -3.3960 1.0531 33 1 2.7606 -3.5986 -1.1091 34 1 1.7280 -4.6883 -0.0380 35 1 -0.3722 -3.5910 -0.9449 36 1 0.6593 -2.5007 -2.0164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:41 Heat of formation + Delta-G solvation = 65.101895 kcal Electronic energy + Delta-G solvation = -17854.794184 eV Core-core repulsion = 15304.674735 eV Total energy + Delta-G solvation = -2550.119449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33619 -36.98762 -35.84134 -31.89103 -31.55558 -29.31289 -28.45953 -25.47397 -24.61900 -22.63823 -21.50000 -20.78897 -20.38818 -19.26327 -16.80573 -15.93898 -15.35225 -15.02776 -14.77286 -13.84374 -13.68005 -13.59126 -13.20323 -12.93283 -12.68522 -12.23229 -12.05085 -11.80875 -11.41364 -11.19839 -10.98857 -10.71808 -10.69373 -10.43652 -10.37695 -10.04091 -9.47843 -8.83565 -8.59873 -8.44637 -8.33457 -8.10538 -7.20731 -6.23500 -3.92353 1.72644 1.83324 3.49307 3.53222 3.69878 4.09907 4.29112 4.60935 4.91711 5.06510 5.19136 5.34713 5.37814 5.44563 5.50668 5.66398 5.76913 5.94686 5.96406 6.08805 6.11491 6.19854 6.26139 6.31951 6.39537 6.48489 6.59603 6.64163 6.77463 6.86644 6.91507 7.03242 7.20874 7.22855 7.26093 7.76590 7.95348 8.37865 8.51770 8.97665 9.76975 11.14663 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.008524 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.471066 B = 3283.952849 C = 3504.871983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.030 3.970 3 Si 1.062 2.938 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.539 4.539 8 H 0.048 0.952 9 C 0.036 3.964 10 C 0.103 3.897 11 N -0.465 5.465 12 C 0.049 3.951 13 C -0.108 4.108 14 C -0.158 4.158 15 C -0.097 4.097 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.099 4.099 19 C 0.123 3.877 20 C -0.192 4.192 21 C -0.195 4.195 22 H 0.270 0.730 23 H 0.080 0.920 24 H 0.009 0.991 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 -8.876 7.087 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.891 3.109 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.022 4.022 11 N -0.180 5.180 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.161 4.161 15 C -0.115 4.115 16 C -0.168 4.168 17 C -0.130 4.130 18 C -0.118 4.118 19 C 0.026 3.974 20 C -0.229 4.229 21 C -0.234 4.234 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.027 0.973 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.160 -6.681 6.976 10.163 hybrid contribution -0.217 -2.430 0.116 2.442 sum 2.944 -9.111 7.092 11.915 Atomic orbital electron populations 1.70767 1.06841 1.30738 1.46393 1.25593 0.96464 1.01950 0.93434 0.83648 0.75019 0.75784 0.76426 1.21064 1.21411 1.21795 1.21054 0.93628 0.89625 1.53402 0.93376 1.19074 0.97290 0.93015 0.87161 1.21805 0.92566 0.96848 0.91007 1.59769 1.18112 1.36046 1.04040 1.23164 0.99389 0.95105 0.90135 1.21676 0.95944 0.96757 1.00201 1.21069 0.98532 0.96072 1.00421 1.20229 0.95954 0.95716 0.99645 1.20873 0.98681 1.00388 0.96841 1.20894 0.99701 0.94904 0.97510 1.20763 0.93922 0.97001 1.00161 1.19660 0.94381 0.89126 0.94274 1.22820 0.96965 0.96775 1.06344 1.22948 0.94056 1.05120 1.01233 0.91874 0.90196 0.97255 0.89911 0.90093 0.90364 0.90830 0.87096 0.86623 0.86308 0.84935 0.90410 0.91685 0.91979 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.44 13.31 55.43 0.74 -25.70 16 2 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 3 Si 1.06 25.25 29.91 -169.99 -5.08 20.17 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.54 -14.64 8.49 -34.44 -0.29 -14.93 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.04 0.86 0.53 -155.67 -0.08 0.77 16 10 C 0.10 2.32 4.51 -3.82 -0.02 2.30 16 11 N -0.46 -9.88 4.68 -169.02 -0.79 -10.68 16 12 C 0.05 0.86 6.99 -2.43 -0.02 0.85 16 13 C -0.11 -1.62 6.98 -26.61 -0.19 -1.81 16 14 C -0.16 -2.70 6.23 -104.04 -0.65 -3.35 16 15 C -0.10 -1.45 10.03 -39.67 -0.40 -1.85 16 16 C -0.15 -2.14 10.06 -39.53 -0.40 -2.53 16 17 C -0.11 -1.74 10.02 -39.68 -0.40 -2.14 16 18 C -0.10 -1.86 7.84 -39.27 -0.31 -2.17 16 19 C 0.12 2.42 5.24 -83.40 -0.44 1.99 16 20 C -0.19 -4.17 7.26 -26.70 -0.19 -4.36 16 21 C -0.20 -4.47 9.45 -26.69 -0.25 -4.73 16 22 H 0.27 7.76 5.99 -40.82 -0.24 7.51 16 23 H 0.08 1.93 6.37 -51.93 -0.33 1.59 16 24 H 0.01 0.20 7.92 -51.93 -0.41 -0.21 16 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.08 1.36 7.50 -51.93 -0.39 0.97 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 2.73 6.91 -52.49 -0.36 2.36 16 33 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.06 1.35 7.75 -51.93 -0.40 0.94 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -29.44 291.52 -9.62 -39.06 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.15 Total: 3.99 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -3.72 Total: -31.23 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.05 Total: -36.38 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.44 -9.62 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.158 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds