Wall clock time and date at job start Mon Mar 30 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47025 * 119.99557 * 3 2 1 6 6 H 1.48500 * 109.46788 * 239.99551 * 3 2 1 7 7 C 1.37882 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 173.28732 * 7 2 1 9 9 C 1.50696 * 120.00193 * 353.28365 * 7 2 1 10 10 C 1.52999 * 115.54975 * 294.41715 * 9 7 2 11 11 N 1.46902 * 109.47446 * 306.40488 * 10 9 7 12 12 C 1.47898 * 111.00234 * 164.42071 * 11 10 9 13 13 C 1.54604 * 102.63107 * 94.67594 * 12 11 10 14 14 C 1.51574 * 102.81360 * 25.60095 * 13 12 11 15 15 C 1.37921 * 131.56087 * 163.77952 * 14 13 12 16 16 C 1.38304 * 120.07835 * 180.27377 * 15 14 13 17 17 C 1.38307 * 119.88315 * 0.02562 * 16 15 14 18 18 C 1.37907 * 120.26458 * 359.84879 * 17 16 15 19 19 C 1.38956 * 107.95152 * 343.80140 * 14 13 12 20 20 C 1.52991 * 117.50026 * 148.74330 * 9 7 2 21 21 C 1.53001 * 117.49662 * 80.08196 * 9 7 2 22 22 H 0.97008 * 119.99900 * 176.79913 * 1 2 3 23 23 H 1.09002 * 109.47003 * 66.40563 * 10 9 7 24 24 H 1.09003 * 109.47361 * 186.39870 * 10 9 7 25 25 H 1.09002 * 110.77452 * 212.96500 * 12 11 10 26 26 H 1.08998 * 110.77965 * 336.20535 * 12 11 10 27 27 H 1.09004 * 110.73949 * 143.92611 * 13 12 11 28 28 H 1.08992 * 110.74354 * 267.26368 * 13 12 11 29 29 H 1.07998 * 119.95915 * 0.26444 * 15 14 13 30 30 H 1.08005 * 120.05744 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.86787 * 179.86738 * 17 16 15 32 32 H 1.07996 * 119.90227 * 180.02562 * 18 17 16 33 33 H 1.09001 * 117.50167 * 0.02562 * 20 9 7 34 34 H 1.09004 * 117.50244 * 145.02143 * 20 9 7 35 35 H 1.09004 * 117.49860 * 214.97597 * 21 9 7 36 36 H 1.08993 * 117.50092 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1088 9 6 1.2588 -2.4946 0.1537 10 6 0.5671 -2.7038 1.5023 11 7 1.5416 -2.5203 2.5862 12 6 0.8605 -2.3445 3.8872 13 6 0.8496 -3.7805 4.4599 14 6 2.0378 -4.4249 3.7740 15 6 2.7421 -5.5771 4.0545 16 6 3.8116 -5.9467 3.2593 17 6 4.1742 -5.1586 2.1821 18 6 3.4716 -4.0069 1.8959 19 6 2.3905 -3.6291 2.6908 20 6 1.8392 -3.7278 -0.5413 21 6 0.5721 -3.0658 -1.0885 22 1 -0.4850 -0.8388 -0.0469 23 1 -0.2400 -1.9796 1.6129 24 1 0.1582 -3.7132 1.5483 25 1 1.4279 -1.6747 4.5333 26 1 -0.1548 -1.9741 3.7453 27 1 0.9891 -3.7660 5.5409 28 1 -0.0744 -4.2946 4.1956 29 1 2.4582 -6.1913 4.8963 30 1 4.3626 -6.8493 3.4790 31 1 5.0107 -5.4463 1.5626 32 1 3.7595 -3.3960 1.0531 33 1 2.7606 -3.5986 -1.1091 34 1 1.7280 -4.6883 -0.0380 35 1 -0.3722 -3.5910 -0.9449 36 1 0.6593 -2.5007 -2.0164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:41 Heat of formation + Delta-G solvation = 49.650909 kcal Electronic energy + Delta-G solvation = -17855.464189 eV Core-core repulsion = 15304.674735 eV Total energy + Delta-G solvation = -2550.789454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70815 -38.67139 -37.27845 -33.97320 -32.90857 -30.67637 -29.73941 -27.23001 -26.57254 -23.92870 -23.23942 -22.14213 -21.79674 -21.13590 -18.66289 -17.37522 -16.74895 -16.35940 -16.17121 -15.63487 -15.51428 -15.09171 -14.87422 -14.38026 -14.08925 -13.91444 -13.48871 -13.21242 -12.94000 -12.81613 -12.61943 -12.36004 -12.24622 -12.19791 -11.94263 -11.67589 -11.25828 -10.70083 -10.37630 -10.21528 -10.03036 -9.62631 -8.63293 -8.42773 -6.10592 0.47606 0.56646 1.54649 1.62093 1.80282 2.62576 2.76003 2.94057 3.25256 3.44223 3.68832 3.86856 4.06652 4.13894 4.21950 4.27205 4.31690 4.45945 4.49711 4.59035 4.65298 4.73325 4.76988 4.80470 4.86904 4.96623 5.01534 5.03782 5.25224 5.37880 5.41591 5.56242 5.66963 5.69444 5.99120 6.19736 6.25840 6.37702 6.56447 6.82557 7.63535 8.96316 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.008524 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.471066 B = 3283.952849 C = 3504.871983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 1.102 2.898 4 H -0.286 1.286 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.031 0.969 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.494 5.494 12 C 0.043 3.957 13 C -0.095 4.095 14 C -0.164 4.164 15 C -0.095 4.095 16 C -0.136 4.136 17 C -0.112 4.112 18 C -0.122 4.122 19 C 0.085 3.915 20 C -0.164 4.164 21 C -0.197 4.197 22 H 0.262 0.738 23 H 0.054 0.946 24 H 0.013 0.987 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -10.924 8.667 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.213 4.213 3 Si 0.927 3.073 4 H -0.212 1.212 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.049 0.951 9 C 0.013 3.987 10 C -0.005 4.005 11 N -0.210 5.210 12 C -0.084 4.084 13 C -0.133 4.133 14 C -0.166 4.166 15 C -0.113 4.113 16 C -0.155 4.155 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.011 4.011 20 C -0.201 4.201 21 C -0.236 4.236 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.107 -8.753 8.558 12.912 hybrid contribution -0.425 -1.890 -0.356 1.969 sum 3.683 -10.642 8.202 13.932 Atomic orbital electron populations 1.70854 1.07472 1.30293 1.48535 1.26684 0.96628 1.04905 0.93117 0.83112 0.74294 0.72792 0.77150 1.21152 1.20704 1.20320 1.21221 0.92933 0.91302 1.52570 0.95119 1.19118 0.98353 0.92882 0.88389 1.21457 0.92125 0.96007 0.90920 1.59702 1.18479 1.37889 1.04943 1.23236 0.98954 0.97186 0.89002 1.21621 0.95632 0.94490 1.01576 1.21350 0.99183 0.96523 0.99581 1.20674 0.95300 0.94960 1.00383 1.21343 0.98024 1.00856 0.95241 1.21182 0.99801 0.93756 0.98332 1.20734 0.95092 0.98349 1.00004 1.19819 0.95115 0.89935 0.96261 1.22700 0.96089 0.96417 1.04886 1.22905 0.95402 1.05283 0.99994 0.92767 0.92771 0.96860 0.89662 0.90395 0.87424 0.90090 0.83693 0.82742 0.84027 0.87978 0.90657 0.90268 0.90461 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.31 21.45 0.29 -55.37 16 2 C -0.01 -0.80 5.39 84.66 0.46 -0.35 16 3 Si 1.10 51.84 29.91 68.60 2.05 53.90 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.34 8.49 25.60 0.22 -30.12 16 8 H 0.03 1.77 7.82 -2.91 -0.02 1.75 16 9 C 0.01 0.66 0.53 -52.93 -0.03 0.63 16 10 C 0.12 5.56 4.51 86.30 0.39 5.95 16 11 N -0.49 -21.31 4.68 -688.65 -3.22 -24.53 16 12 C 0.04 1.49 6.99 86.66 0.61 2.10 16 13 C -0.10 -2.65 6.98 30.67 0.21 -2.44 16 14 C -0.16 -5.19 6.23 -19.49 -0.12 -5.31 16 15 C -0.09 -2.43 10.03 22.21 0.22 -2.21 16 16 C -0.14 -3.30 10.06 22.30 0.22 -3.08 16 17 C -0.11 -3.24 10.02 22.21 0.22 -3.01 16 18 C -0.12 -4.56 7.84 22.47 0.18 -4.38 16 19 C 0.09 3.32 5.24 38.28 0.20 3.52 16 20 C -0.16 -7.15 7.26 30.62 0.22 -6.92 16 21 C -0.20 -9.18 9.45 30.62 0.29 -8.89 16 22 H 0.26 15.58 5.99 -92.70 -0.55 15.03 16 23 H 0.05 2.72 6.37 -2.39 -0.02 2.70 16 24 H 0.01 0.58 7.92 -2.39 -0.02 0.56 16 25 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.08 2.67 7.50 -2.39 -0.02 2.65 16 27 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.10 4.35 6.91 -2.91 -0.02 4.33 16 33 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.08 3.22 7.75 -2.38 -0.02 3.20 16 35 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.77 291.52 3.67 -61.09 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.27 Total: 19.43 kcal Atomic # 6 Polarization: -57.81 SS G_CDS: 3.29 Total: -54.52 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -2.94 Total: -79.90 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.05 Total: 53.90 kcal Total: -64.77 3.67 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.743 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds