Wall clock time and date at job start Mon Mar 30 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47147 * 299.99488 * 3 2 1 6 6 H 1.48498 * 109.46815 * 59.99854 * 3 2 1 7 7 C 1.40310 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00098 * 195.39299 * 7 2 1 9 9 C 1.40075 * 120.00015 * 15.67112 * 7 2 1 10 10 C 1.34081 * 118.82728 * 196.87780 * 9 7 2 11 11 C 1.50216 * 122.69948 * 180.46943 * 10 9 7 12 12 N 1.46821 * 110.20849 * 342.74351 * 11 10 9 13 13 C 1.46900 * 110.99825 * 175.10183 * 12 11 10 14 14 C 1.50699 * 109.46803 * 293.95147 * 13 12 11 15 15 C 1.38245 * 119.99791 * 269.72861 * 14 13 12 16 16 C 1.38229 * 119.99482 * 179.81432 * 15 14 13 17 17 C 1.38237 * 120.00422 * 0.41845 * 16 15 14 18 18 C 1.38230 * 119.99661 * 359.81281 * 17 16 15 19 19 C 1.38230 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.47179 * 110.36430 * 51.59746 * 12 11 10 21 21 C 1.50372 * 118.82694 * 16.60833 * 9 7 2 22 22 H 0.96993 * 120.00380 * 0.02562 * 1 2 3 23 23 H 1.08002 * 118.64676 * 0.49302 * 10 9 7 24 24 H 1.08999 * 109.34946 * 102.96880 * 11 10 9 25 25 H 1.08995 * 109.34454 * 222.66612 * 11 10 9 26 26 H 1.09000 * 109.47432 * 53.95470 * 13 12 11 27 27 H 1.09005 * 109.47018 * 173.95169 * 13 12 11 28 28 H 1.07997 * 119.99658 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.99843 * 180.20582 * 16 15 14 30 30 H 1.08001 * 120.00308 * 179.79449 * 17 16 15 31 31 H 1.08004 * 119.99837 * 179.97438 * 18 17 16 32 32 H 1.08005 * 120.00213 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.60720 * 49.71483 * 20 12 11 34 34 H 1.09000 * 109.60932 * 170.05859 * 20 12 11 35 35 H 1.08998 * 109.43693 * 283.37559 * 21 9 7 36 36 H 1.09002 * 109.43790 * 43.24599 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0084 -1.2151 0.0005 8 1 3.0593 -1.2318 0.2488 9 6 1.3471 -2.4058 -0.3266 10 6 1.9174 -3.5737 0.0029 11 6 1.2904 -4.9012 -0.3148 12 7 -0.1341 -4.7279 -0.6257 13 6 -0.7381 -5.9974 -1.0517 14 6 -0.1342 -6.4255 -2.3643 15 6 -0.7117 -6.0240 -3.5545 16 6 -0.1554 -6.4136 -4.7584 17 6 0.9732 -7.2116 -4.7725 18 6 1.5478 -7.6169 -3.5824 19 6 0.9942 -7.2238 -2.3783 20 6 -0.3114 -3.6885 -1.6525 21 6 0.0199 -2.3286 -1.0293 22 1 -0.4850 0.8400 -0.0004 23 1 2.8665 -3.5593 0.5181 24 1 1.7961 -5.3434 -1.1732 25 1 1.3921 -5.5635 0.5449 26 1 -0.5480 -6.7613 -0.2978 27 1 -1.8135 -5.8657 -1.1722 28 1 -1.5959 -5.4040 -3.5434 29 1 -0.6046 -6.0972 -5.6883 30 1 1.4059 -7.5187 -5.7132 31 1 2.4294 -8.2408 -3.5933 32 1 1.4429 -7.5408 -1.4485 33 1 0.3580 -3.8839 -2.4902 34 1 -1.3441 -3.6911 -2.0011 35 1 -0.7547 -2.0560 -0.3125 36 1 0.0685 -1.5739 -1.8143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091301636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:08 Heat of formation + Delta-G solvation = 36.583363 kcal Electronic energy + Delta-G solvation = -17218.178776 eV Core-core repulsion = 14666.822671 eV Total energy + Delta-G solvation = -2551.356105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51949 -37.35852 -34.55177 -32.14460 -30.82507 -30.09601 -29.25159 -26.91723 -24.40395 -22.76757 -21.90188 -21.56856 -20.42399 -17.61275 -16.67077 -15.77180 -15.26330 -15.09033 -14.79179 -14.59177 -13.85914 -13.58084 -13.25575 -12.92859 -12.59017 -12.27685 -11.98481 -11.68297 -11.40061 -11.29608 -11.09786 -10.91127 -10.80104 -10.53336 -10.45408 -10.10200 -9.47931 -9.05926 -8.90416 -8.71160 -8.53139 -7.58876 -7.25568 -6.51231 -4.16415 1.54092 1.58456 2.99959 3.14985 3.21602 3.95707 3.97086 4.06696 4.83882 5.01764 5.09911 5.16582 5.29475 5.35412 5.53810 5.68264 5.81070 6.04474 6.06221 6.21242 6.23584 6.34159 6.50201 6.61775 6.65348 6.66549 6.69246 6.85830 7.07402 7.17793 7.19103 7.28927 7.35617 7.75735 7.85035 7.98651 8.17574 8.50396 8.74078 9.18602 9.41059 10.35821 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.005627 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.882596 B = 4974.551296 C = 5027.490611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.471 4.471 8 H 0.069 0.931 9 C 0.095 3.905 10 C -0.415 4.415 11 C 0.133 3.867 12 N -0.515 5.515 13 C 0.085 3.915 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.106 4.106 20 C 0.054 3.946 21 C -0.051 4.051 22 H 0.275 0.725 23 H 0.075 0.925 24 H 0.009 0.991 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -9.645 -6.941 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.502 4.502 8 H 0.088 0.912 9 C 0.093 3.907 10 C -0.437 4.437 11 C 0.006 3.994 12 N -0.237 5.237 13 C -0.043 4.043 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.074 4.074 21 C -0.089 4.089 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.636 -9.296 -6.461 11.624 hybrid contribution 0.950 0.610 -0.779 1.372 sum -1.686 -8.687 -7.241 11.434 Atomic orbital electron populations 1.69804 1.07455 1.28526 1.38061 1.25972 0.94663 1.01090 0.92265 0.86367 0.81070 0.81541 0.78296 1.18680 1.20011 1.20197 1.19492 0.97136 0.91339 1.42233 0.91249 1.18082 0.90973 0.92511 0.89123 1.21395 1.05490 0.91431 1.25365 1.20397 0.84996 0.97604 0.96393 1.62780 1.16909 1.04068 1.39937 1.21369 0.98763 0.93067 0.91082 1.20852 0.96407 0.96657 0.97079 1.21087 1.00104 0.99504 0.92072 1.21093 0.96681 0.98648 0.97778 1.21061 0.96659 0.99103 0.97839 1.21099 0.99840 1.00551 0.92692 1.21085 0.95808 0.97684 0.97932 1.22377 0.98413 0.93973 0.92618 1.20414 0.98022 0.91377 0.99080 0.91390 0.90683 0.97318 0.93862 0.90603 0.90600 0.86298 0.86471 0.86598 0.86469 0.86271 0.95722 0.92945 0.89343 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 10.38 55.57 0.58 -20.67 16 2 C 0.08 1.97 5.18 -17.26 -0.09 1.88 16 3 Si 0.90 19.57 29.59 -169.99 -5.03 14.54 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.47 -13.20 8.90 -38.11 -0.34 -13.54 16 8 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 9 C 0.10 2.61 5.60 -105.56 -0.59 2.02 16 10 C -0.41 -10.87 9.70 -36.01 -0.35 -11.22 16 11 C 0.13 2.94 5.33 -5.25 -0.03 2.91 16 12 N -0.51 -10.69 4.90 -237.50 -1.16 -11.85 16 13 C 0.09 1.41 5.53 -4.98 -0.03 1.38 16 14 C -0.11 -1.70 4.04 -104.62 -0.42 -2.12 16 15 C -0.11 -1.61 8.24 -39.58 -0.33 -1.94 16 16 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 17 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 18 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 19 C -0.11 -1.60 7.89 -39.59 -0.31 -1.91 16 20 C 0.05 1.16 4.33 -3.56 -0.02 1.14 16 21 C -0.05 -1.29 4.31 -27.93 -0.12 -1.41 16 22 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 23 H 0.07 2.01 7.98 -52.49 -0.42 1.59 16 24 H 0.01 0.20 5.79 -51.93 -0.30 -0.10 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 27 H 0.08 1.14 8.08 -51.93 -0.42 0.73 16 28 H 0.12 1.63 7.75 -52.49 -0.41 1.23 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.69 7.96 -52.48 -0.42 1.27 16 33 H 0.02 0.54 7.01 -51.93 -0.36 0.18 16 34 H 0.05 1.00 7.74 -51.93 -0.40 0.60 16 35 H 0.09 2.37 7.02 -51.93 -0.36 2.00 16 36 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 LS Contribution 288.84 15.07 4.35 4.35 Total: -1.00 -28.56 288.84 -10.23 -38.79 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.15 Total: 3.83 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -3.82 Total: -28.98 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: -0.59 Total: -32.53 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.56 -10.23 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091301636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.371 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds