Wall clock time and date at job start Mon Mar 30 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47147 * 299.99488 * 3 2 1 6 6 H 1.48498 * 109.46815 * 59.99854 * 3 2 1 7 7 C 1.40310 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00098 * 195.39299 * 7 2 1 9 9 C 1.40075 * 120.00015 * 15.67112 * 7 2 1 10 10 C 1.34081 * 118.82728 * 196.87780 * 9 7 2 11 11 C 1.50216 * 122.69948 * 180.46943 * 10 9 7 12 12 N 1.46821 * 110.20849 * 342.74351 * 11 10 9 13 13 C 1.46900 * 110.99825 * 175.10183 * 12 11 10 14 14 C 1.50699 * 109.46803 * 293.95147 * 13 12 11 15 15 C 1.38245 * 119.99791 * 269.72861 * 14 13 12 16 16 C 1.38229 * 119.99482 * 179.81432 * 15 14 13 17 17 C 1.38237 * 120.00422 * 0.41845 * 16 15 14 18 18 C 1.38230 * 119.99661 * 359.81281 * 17 16 15 19 19 C 1.38230 * 120.00267 * 359.97438 * 18 17 16 20 20 C 1.47179 * 110.36430 * 51.59746 * 12 11 10 21 21 C 1.50372 * 118.82694 * 16.60833 * 9 7 2 22 22 H 0.96993 * 120.00380 * 0.02562 * 1 2 3 23 23 H 1.08002 * 118.64676 * 0.49302 * 10 9 7 24 24 H 1.08999 * 109.34946 * 102.96880 * 11 10 9 25 25 H 1.08995 * 109.34454 * 222.66612 * 11 10 9 26 26 H 1.09000 * 109.47432 * 53.95470 * 13 12 11 27 27 H 1.09005 * 109.47018 * 173.95169 * 13 12 11 28 28 H 1.07997 * 119.99658 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.99843 * 180.20582 * 16 15 14 30 30 H 1.08001 * 120.00308 * 179.79449 * 17 16 15 31 31 H 1.08004 * 119.99837 * 179.97438 * 18 17 16 32 32 H 1.08005 * 120.00213 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.60720 * 49.71483 * 20 12 11 34 34 H 1.09000 * 109.60932 * 170.05859 * 20 12 11 35 35 H 1.08998 * 109.43693 * 283.37559 * 21 9 7 36 36 H 1.09002 * 109.43790 * 43.24599 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0084 -1.2151 0.0005 8 1 3.0593 -1.2318 0.2488 9 6 1.3471 -2.4058 -0.3266 10 6 1.9174 -3.5737 0.0029 11 6 1.2904 -4.9012 -0.3148 12 7 -0.1341 -4.7279 -0.6257 13 6 -0.7381 -5.9974 -1.0517 14 6 -0.1342 -6.4255 -2.3643 15 6 -0.7117 -6.0240 -3.5545 16 6 -0.1554 -6.4136 -4.7584 17 6 0.9732 -7.2116 -4.7725 18 6 1.5478 -7.6169 -3.5824 19 6 0.9942 -7.2238 -2.3783 20 6 -0.3114 -3.6885 -1.6525 21 6 0.0199 -2.3286 -1.0293 22 1 -0.4850 0.8400 -0.0004 23 1 2.8665 -3.5593 0.5181 24 1 1.7961 -5.3434 -1.1732 25 1 1.3921 -5.5635 0.5449 26 1 -0.5480 -6.7613 -0.2978 27 1 -1.8135 -5.8657 -1.1722 28 1 -1.5959 -5.4040 -3.5434 29 1 -0.6046 -6.0972 -5.6883 30 1 1.4059 -7.5187 -5.7132 31 1 2.4294 -8.2408 -3.5933 32 1 1.4429 -7.5408 -1.4485 33 1 0.3580 -3.8839 -2.4902 34 1 -1.3441 -3.6911 -2.0011 35 1 -0.7547 -2.0560 -0.3125 36 1 0.0685 -1.5739 -1.8143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091301636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:07 Heat of formation + Delta-G solvation = 21.004057 kcal Electronic energy + Delta-G solvation = -17218.854346 eV Core-core repulsion = 14666.822671 eV Total energy + Delta-G solvation = -2552.031675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78368 -38.91451 -36.37016 -33.85074 -31.95716 -31.60187 -31.02063 -28.60143 -26.04906 -24.31799 -23.38872 -23.01312 -21.77381 -19.55805 -18.12658 -17.31411 -17.05364 -16.44699 -16.09704 -16.07732 -15.39047 -15.22901 -14.48463 -14.32857 -14.20599 -13.79074 -13.66177 -13.22068 -13.06628 -12.96064 -12.65589 -12.48821 -12.22574 -12.11235 -12.00071 -11.75909 -11.39194 -11.02722 -10.85808 -9.78701 -9.69213 -9.41213 -9.07059 -8.49337 -6.27639 0.46381 0.52510 1.24709 1.37170 1.51207 1.98003 2.24007 2.87425 3.26467 3.31863 3.94466 3.96070 4.17390 4.26566 4.30867 4.37545 4.51991 4.64953 4.70605 4.77831 4.83893 4.85348 4.98004 5.10282 5.14671 5.17782 5.27506 5.30522 5.34258 5.58050 5.62593 5.70263 5.76090 5.92289 6.15193 6.23388 6.30611 6.49899 6.67791 7.11827 7.34799 8.38483 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.005627 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.882596 B = 4974.551296 C = 5027.490611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.038 3.962 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.066 3.934 10 C -0.427 4.427 11 C 0.142 3.858 12 N -0.529 5.529 13 C 0.088 3.912 14 C -0.126 4.126 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.123 4.123 20 C 0.069 3.931 21 C -0.039 4.039 22 H 0.287 0.713 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -9.861 -8.240 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.449 4.449 11 C 0.015 3.985 12 N -0.251 5.251 13 C -0.039 4.039 14 C -0.128 4.128 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.059 4.059 21 C -0.077 4.077 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.048 -9.541 -7.762 12.671 hybrid contribution 1.070 0.618 -0.380 1.293 sum -1.978 -8.923 -8.142 12.241 Atomic orbital electron populations 1.69843 1.08547 1.30172 1.36981 1.26740 0.95580 1.04117 0.91160 0.85263 0.79102 0.76787 0.79133 1.19194 1.18450 1.18935 1.19690 0.96851 0.93191 1.44757 0.92808 1.18494 0.92330 0.92901 0.89911 1.21676 1.05018 0.93402 1.24823 1.20230 0.86034 0.95276 0.96976 1.62666 1.15828 1.06172 1.40452 1.21396 0.99240 0.91168 0.92108 1.20790 0.97178 0.97947 0.96869 1.21281 1.00592 0.99830 0.92390 1.21441 0.96777 0.98252 0.98273 1.21462 0.96236 0.98187 0.98852 1.21427 1.00468 1.00550 0.92430 1.21258 0.95970 0.98152 0.98823 1.22162 0.99500 0.92224 0.92061 1.20203 0.96152 0.93366 0.97942 0.90260 0.92618 0.96716 0.92847 0.89496 0.89087 0.85667 0.84131 0.83818 0.84337 0.86141 0.96486 0.90482 0.91351 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.68 10.38 21.89 0.23 -43.45 16 2 C 0.04 2.02 5.18 85.37 0.44 2.46 16 3 Si 0.98 40.15 29.59 68.60 2.03 42.18 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.51 -29.84 8.90 23.22 0.21 -29.63 16 8 H 0.05 3.16 7.88 -2.91 -0.02 3.14 16 9 C 0.07 3.73 5.60 -20.47 -0.11 3.61 16 10 C -0.43 -23.10 9.70 24.59 0.24 -22.86 16 11 C 0.14 6.30 5.33 85.42 0.46 6.75 16 12 N -0.53 -21.62 4.90 -905.32 -4.44 -26.06 16 13 C 0.09 2.78 5.53 85.56 0.47 3.25 16 14 C -0.13 -3.78 4.04 -19.86 -0.08 -3.86 16 15 C -0.12 -3.38 8.24 22.27 0.18 -3.20 16 16 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 17 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 18 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 19 C -0.12 -3.52 7.89 22.27 0.18 -3.35 16 20 C 0.07 2.90 4.33 86.32 0.37 3.28 16 21 C -0.04 -1.99 4.31 29.82 0.13 -1.87 16 22 H 0.29 13.58 8.29 -92.71 -0.77 12.81 16 23 H 0.06 3.12 7.98 -2.91 -0.02 3.10 16 24 H 0.02 0.65 5.79 -2.39 -0.01 0.64 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 27 H 0.09 2.56 8.08 -2.38 -0.02 2.55 16 28 H 0.13 3.19 7.75 -2.91 -0.02 3.17 16 29 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.12 3.29 7.96 -2.91 -0.02 3.27 16 33 H 0.02 0.74 7.01 -2.39 -0.02 0.73 16 34 H 0.08 2.85 7.74 -2.39 -0.02 2.83 16 35 H 0.07 3.74 7.02 -2.39 -0.02 3.72 16 36 H 0.04 2.13 7.57 -2.39 -0.02 2.11 16 Total: -1.00 -62.34 288.84 2.02 -60.32 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.05 Total: 21.11 kcal Atomic # 6 Polarization: -57.26 SS G_CDS: 3.15 Total: -54.10 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -4.21 Total: -69.50 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -62.34 2.02 -60.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091301636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.323 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds