Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34246 * 125.03339 * 2 1 4 4 C 1.46491 * 106.99121 * 180.26615 * 3 2 1 5 5 C 1.39630 * 134.02521 * 179.75540 * 4 3 2 6 6 C 1.36624 * 119.76450 * 179.97438 * 5 4 3 7 7 C 1.38836 * 120.52398 * 0.02562 * 6 5 4 8 8 C 1.37745 * 120.66830 * 359.97438 * 7 6 5 9 9 C 1.39128 * 119.78186 * 0.02562 * 8 7 6 10 10 N 1.36828 * 125.03396 * 179.80891 * 2 1 3 11 11 C 1.46499 * 125.06179 * 359.97438 * 10 2 1 12 12 C 1.53000 * 109.46840 * 269.69265 * 11 10 2 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 H 1.09005 * 109.47382 * 270.19187 * 1 2 3 23 23 H 1.09005 * 109.46837 * 30.18693 * 1 2 3 24 24 H 1.08992 * 109.47255 * 150.18742 * 1 2 3 25 25 H 1.07995 * 126.50225 * 0.02613 * 3 2 1 26 26 H 1.07995 * 120.12044 * 359.97438 * 5 4 3 27 27 H 1.07996 * 119.73979 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.66657 * 179.97438 * 7 6 5 29 29 H 1.07996 * 120.11482 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.46813 * 149.69539 * 11 10 2 31 31 H 1.08992 * 109.47397 * 29.69601 * 11 10 2 32 32 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 33 33 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 35 35 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6705 0.6455 -0.0065 5 6 4.9041 1.2996 -0.0137 6 6 6.0589 0.5695 -0.0181 7 6 6.0158 -0.8182 -0.0160 8 6 4.8098 -1.4837 -0.0088 9 6 3.6214 -0.7603 -0.0043 10 7 2.2925 -1.1204 0.0037 11 6 1.7937 -2.4978 0.0089 12 6 1.6279 -2.9747 1.4532 13 6 1.1077 -4.4135 1.4586 14 6 0.9437 -4.8831 2.8811 15 1 1.1860 -4.2214 3.6995 16 6 0.4835 -6.1572 3.1378 17 7 0.1880 -6.9629 2.1412 18 14 0.2810 -6.7396 4.9011 19 1 0.6787 -5.6517 5.8304 20 1 -1.1387 -7.1020 5.1428 21 1 1.1413 -7.9276 5.1319 22 1 -0.3634 0.0034 1.0277 23 1 -0.3633 0.8884 -0.5168 24 1 -0.3633 -0.8916 -0.5109 25 1 1.9356 2.1236 0.0004 26 1 4.9453 2.3788 -0.0159 27 1 7.0128 1.0758 -0.0233 28 1 6.9372 -1.3816 -0.0199 29 1 4.7867 -2.5634 -0.0076 30 1 2.5041 -3.1433 -0.5076 31 1 0.8306 -2.5374 -0.4997 32 1 2.5912 -2.9351 1.9618 33 1 0.9175 -2.3292 1.9697 34 1 0.1445 -4.4535 0.9498 35 1 1.8183 -5.0589 0.9422 36 1 -0.1361 -7.8591 2.3218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111550307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = 35.650074 kcal Electronic energy + Delta-G solvation = -16638.783248 eV Core-core repulsion = 14087.386673 eV Total energy + Delta-G solvation = -2551.396576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15889 -37.12021 -34.66136 -32.75355 -31.42749 -30.69671 -29.39502 -26.81225 -26.10933 -23.45279 -21.63395 -21.31942 -20.49971 -19.33171 -16.88971 -16.19282 -16.07158 -14.98546 -14.83938 -14.45756 -14.41565 -13.70349 -13.44601 -12.92928 -12.89879 -12.58010 -12.41468 -12.22977 -12.03372 -11.47114 -11.33135 -11.20815 -10.91443 -10.77237 -10.57099 -10.55018 -9.89082 -9.62403 -9.36622 -9.17069 -8.43428 -7.85183 -7.36035 -6.08096 -4.10853 1.33135 1.85705 2.89770 3.10734 3.26729 3.34543 3.39222 4.13370 4.40332 4.82280 4.87836 5.09190 5.19886 5.28260 5.31431 5.38656 5.54201 5.61404 5.68649 5.72626 5.78609 5.86615 5.97785 6.03210 6.16305 6.28031 6.40722 6.61160 6.66724 6.78936 6.90050 7.00277 7.09939 7.50242 7.54030 7.60704 7.65557 7.90064 8.32338 8.95501 9.54043 11.03164 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.005068 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.679053 B = 5523.847866 C = 6067.556078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.090 3.910 3 C -0.223 4.223 4 C -0.109 4.109 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.109 4.109 8 C -0.121 4.121 9 C 0.100 3.900 10 N -0.471 5.471 11 C 0.103 3.897 12 C -0.122 4.122 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 14.310 -6.193 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.247 4.247 4 C -0.114 4.114 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.129 4.129 8 C -0.141 4.141 9 C -0.007 4.007 10 N -0.153 5.153 11 C -0.018 4.018 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.360 13.799 -6.234 16.063 hybrid contribution -0.130 -0.562 0.990 1.146 sum 5.231 13.237 -5.244 15.168 Atomic orbital electron populations 1.20496 0.88023 1.03339 1.03392 1.20382 0.93623 0.85632 1.02210 1.21312 0.90373 0.97311 1.15736 1.19187 0.93588 0.92097 1.06513 1.20173 0.90619 0.99024 0.99889 1.20537 0.97660 0.93983 1.04978 1.20730 0.96545 0.94346 1.01239 1.20119 0.89820 0.99328 1.04867 1.18259 0.84680 0.93830 1.03935 1.44284 1.03581 1.06410 1.60979 1.22135 1.00266 0.78554 1.00819 1.22033 1.01323 1.00489 0.92235 1.19050 0.96223 0.88445 0.97587 1.21219 1.43925 0.98503 0.92272 0.92621 1.25013 0.95362 0.96776 0.97192 1.69967 1.45057 1.07663 1.30731 0.86522 0.77779 0.78754 0.84910 1.19710 1.20927 1.20913 0.90257 0.90157 0.91086 0.84126 0.86607 0.86565 0.86139 0.86234 0.89950 0.89702 0.92730 0.92725 0.96376 0.96385 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.03 36.01 0.36 -0.76 16 2 C 0.09 1.34 6.83 -81.77 -0.56 0.79 16 3 C -0.22 -3.25 10.95 -37.67 -0.41 -3.66 16 4 C -0.11 -1.73 6.37 -105.14 -0.67 -2.40 16 5 C -0.08 -1.07 10.05 -39.65 -0.40 -1.47 16 6 C -0.15 -1.94 9.97 -39.94 -0.40 -2.33 16 7 C -0.11 -1.46 10.01 -39.54 -0.40 -1.86 16 8 C -0.12 -1.87 9.97 -39.43 -0.39 -2.27 16 9 C 0.10 1.68 6.81 -83.99 -0.57 1.11 16 10 N -0.47 -7.84 2.78 -109.86 -0.31 -8.14 16 11 C 0.10 1.74 5.78 -4.04 -0.02 1.72 16 12 C -0.12 -2.50 5.48 -26.73 -0.15 -2.64 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.83 6.91 -51.93 -0.36 0.47 16 25 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.08 1.33 6.87 -51.93 -0.36 0.97 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -30.82 305.79 -9.47 -40.28 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.33 Total: -0.88 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -4.16 Total: -26.66 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.43 Total: -33.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.82 -9.47 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111550307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.933 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds