Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34246 * 125.03339 * 2 1 4 4 C 1.46491 * 106.99121 * 180.26615 * 3 2 1 5 5 C 1.39630 * 134.02521 * 179.75540 * 4 3 2 6 6 C 1.36624 * 119.76450 * 179.97438 * 5 4 3 7 7 C 1.38836 * 120.52398 * 0.02562 * 6 5 4 8 8 C 1.37745 * 120.66830 * 359.97438 * 7 6 5 9 9 C 1.39128 * 119.78186 * 0.02562 * 8 7 6 10 10 N 1.36828 * 125.03396 * 179.80891 * 2 1 3 11 11 C 1.46499 * 125.06179 * 359.97438 * 10 2 1 12 12 C 1.53000 * 109.46840 * 269.69265 * 11 10 2 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 H 1.09005 * 109.47382 * 270.19187 * 1 2 3 23 23 H 1.09005 * 109.46837 * 30.18693 * 1 2 3 24 24 H 1.08992 * 109.47255 * 150.18742 * 1 2 3 25 25 H 1.07995 * 126.50225 * 0.02613 * 3 2 1 26 26 H 1.07995 * 120.12044 * 359.97438 * 5 4 3 27 27 H 1.07996 * 119.73979 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.66657 * 179.97438 * 7 6 5 29 29 H 1.07996 * 120.11482 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.46813 * 149.69539 * 11 10 2 31 31 H 1.08992 * 109.47397 * 29.69601 * 11 10 2 32 32 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 33 33 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 34 34 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 35 35 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6705 0.6455 -0.0065 5 6 4.9041 1.2996 -0.0137 6 6 6.0589 0.5695 -0.0181 7 6 6.0158 -0.8182 -0.0160 8 6 4.8098 -1.4837 -0.0088 9 6 3.6214 -0.7603 -0.0043 10 7 2.2925 -1.1204 0.0037 11 6 1.7937 -2.4978 0.0089 12 6 1.6279 -2.9747 1.4532 13 6 1.1077 -4.4135 1.4586 14 6 0.9437 -4.8831 2.8811 15 1 1.1860 -4.2214 3.6995 16 6 0.4835 -6.1572 3.1378 17 7 0.1880 -6.9629 2.1412 18 14 0.2810 -6.7396 4.9011 19 1 0.6787 -5.6517 5.8304 20 1 -1.1387 -7.1020 5.1428 21 1 1.1413 -7.9276 5.1319 22 1 -0.3634 0.0034 1.0277 23 1 -0.3633 0.8884 -0.5168 24 1 -0.3633 -0.8916 -0.5109 25 1 1.9356 2.1236 0.0004 26 1 4.9453 2.3788 -0.0159 27 1 7.0128 1.0758 -0.0233 28 1 6.9372 -1.3816 -0.0199 29 1 4.7867 -2.5634 -0.0076 30 1 2.5041 -3.1433 -0.5076 31 1 0.8306 -2.5374 -0.4997 32 1 2.5912 -2.9351 1.9618 33 1 0.9175 -2.3292 1.9697 34 1 0.1445 -4.4535 0.9498 35 1 1.8183 -5.0589 0.9422 36 1 -0.1361 -7.8591 2.3218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111550307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = 21.005980 kcal Electronic energy + Delta-G solvation = -16639.418264 eV Core-core repulsion = 14087.386673 eV Total energy + Delta-G solvation = -2552.031591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29170 -38.23561 -36.37298 -34.53353 -32.76659 -31.84300 -30.74406 -28.27474 -27.39771 -25.17607 -22.86116 -22.40966 -22.21704 -20.50505 -18.63476 -17.71513 -17.25898 -16.56782 -16.05409 -15.97478 -15.83888 -14.94204 -14.69753 -14.39777 -14.00600 -13.94080 -13.74270 -13.49204 -13.27579 -13.08392 -12.87595 -12.68671 -12.52060 -12.32728 -12.00047 -11.73662 -11.67953 -11.50226 -11.25833 -10.60757 -10.50870 -8.98395 -8.49425 -8.24764 -6.36276 0.24416 0.75702 1.37077 1.37914 1.50761 1.77597 1.92193 2.37787 3.03807 3.08360 3.72850 3.75584 3.84465 4.12397 4.17271 4.29221 4.34160 4.47200 4.52929 4.60951 4.67931 4.72941 4.79727 4.84246 5.01817 5.05740 5.09360 5.13872 5.23450 5.42847 5.60010 5.60944 5.73132 5.76615 5.92851 6.03829 6.17181 6.38988 6.43972 6.78647 7.33254 8.86383 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.005068 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.679053 B = 5523.847866 C = 6067.556078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.072 3.928 3 C -0.224 4.224 4 C -0.132 4.132 5 C -0.083 4.083 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.148 4.148 9 C 0.068 3.932 10 N -0.483 5.483 11 C 0.115 3.885 12 C -0.102 4.102 13 C 0.030 3.970 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.277 1.277 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.167 0.833 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.004 0.996 35 H -0.003 1.003 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 15.880 -5.712 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 C -0.248 4.248 4 C -0.136 4.136 5 C -0.101 4.101 6 C -0.170 4.170 7 C -0.126 4.126 8 C -0.169 4.169 9 C -0.038 4.038 10 N -0.166 5.166 11 C -0.006 4.006 12 C -0.141 4.141 13 C -0.007 4.007 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.202 1.202 22 H 0.097 0.903 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.185 0.815 26 H 0.160 0.840 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.016 0.984 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.942 15.395 -5.758 17.477 hybrid contribution -0.223 -1.004 0.812 1.310 sum 5.719 14.391 -4.946 16.256 Atomic orbital electron populations 1.20586 0.86081 1.04600 1.03724 1.20946 0.95004 0.85252 1.02323 1.21695 0.89888 0.98399 1.14857 1.19611 0.95019 0.91877 1.07115 1.20572 0.90056 1.00547 0.98933 1.20961 0.98928 0.93692 1.03402 1.21114 0.96650 0.95200 0.99604 1.20312 0.90628 0.99317 1.06656 1.18662 0.85001 0.94929 1.05163 1.44266 1.04001 1.06212 1.62114 1.21825 1.01038 0.79488 0.98262 1.21713 1.00003 0.97663 0.94694 1.18907 0.95028 0.90849 0.95943 1.21618 1.44168 0.99029 0.93510 0.92875 1.25897 0.94840 0.96871 1.01692 1.70076 1.45665 1.08135 1.33012 0.85438 0.78081 0.78300 0.79492 1.19075 1.20011 1.20224 0.90287 0.87383 0.91345 0.81548 0.83959 0.83228 0.83701 0.86921 0.90050 0.88413 0.94106 0.92915 0.97799 0.98432 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 10.03 71.24 0.71 -1.35 16 2 C 0.07 2.10 6.83 40.87 0.28 2.37 16 3 C -0.22 -6.21 10.95 23.51 0.26 -5.95 16 4 C -0.13 -4.02 6.37 -20.20 -0.13 -4.15 16 5 C -0.08 -2.07 10.05 22.23 0.22 -1.84 16 6 C -0.15 -3.43 9.97 22.04 0.22 -3.21 16 7 C -0.11 -2.70 10.01 22.30 0.22 -2.48 16 8 C -0.15 -4.65 9.97 22.37 0.22 -4.42 16 9 C 0.07 2.32 6.81 39.03 0.27 2.58 16 10 N -0.48 -16.18 2.78 -501.49 -1.39 -17.58 16 11 C 0.12 4.00 5.78 86.38 0.50 4.50 16 12 C -0.10 -4.29 5.48 30.59 0.17 -4.13 16 13 C 0.03 1.57 4.97 29.85 0.15 1.72 16 14 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C 0.01 0.30 5.46 84.65 0.46 0.77 16 17 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 18 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.07 1.54 6.91 -2.39 -0.02 1.52 16 25 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 27 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.11 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 31 H 0.10 3.10 6.87 -2.39 -0.02 3.08 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -66.48 305.79 5.75 -60.73 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.04 Total: 12.42 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.79 Total: -46.46 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.11 Total: -72.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.48 5.75 -60.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111550307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.735 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds