Wall clock time and date at job start Mon Mar 30 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36656 * 120.11819 * 2 1 4 4 C 1.38793 * 120.53126 * 179.74458 * 3 2 1 5 5 C 1.37792 * 120.66037 * 0.26164 * 4 3 2 6 6 C 1.39085 * 119.78090 * 359.97438 * 5 4 3 7 7 C 1.39599 * 120.11842 * 180.25747 * 2 1 3 8 8 C 1.46491 * 134.03630 * 359.91251 * 7 2 1 9 9 C 1.34234 * 106.99797 * 180.29895 * 8 7 2 10 10 N 1.36840 * 109.94039 * 0.02562 * 9 8 7 11 11 C 1.46491 * 125.06526 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47138 * 264.97513 * 11 10 9 13 13 C 1.53009 * 109.47009 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46985 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99807 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99767 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00248 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47148 * 89.99928 * 18 16 14 20 20 H 1.48501 * 109.47262 * 210.00510 * 18 16 14 21 21 H 1.48507 * 109.47252 * 330.00380 * 18 16 14 22 22 H 1.08997 * 109.47221 * 89.99764 * 1 2 3 23 23 H 1.09006 * 109.46838 * 209.99486 * 1 2 3 24 24 H 1.08997 * 109.46624 * 329.99280 * 1 2 3 25 25 H 1.08002 * 119.73756 * 0.03235 * 3 2 1 26 26 H 1.07994 * 119.66815 * 180.23634 * 4 3 2 27 27 H 1.08001 * 120.10415 * 180.02562 * 5 4 3 28 28 H 1.07994 * 126.50464 * 0.33923 * 8 7 2 29 29 H 1.08003 * 125.03360 * 179.97438 * 9 8 7 30 30 H 1.09000 * 109.47575 * 24.97878 * 11 10 9 31 31 H 1.09007 * 109.47198 * 144.97825 * 11 10 9 32 32 H 1.09004 * 109.47260 * 300.00103 * 12 11 10 33 33 H 1.08999 * 109.47123 * 60.00164 * 12 11 10 34 34 H 1.08996 * 109.46779 * 300.00212 * 13 12 11 35 35 H 1.08999 * 109.47192 * 60.00025 * 13 12 11 36 36 H 0.96995 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5807 1.1921 0.0053 5 6 4.2919 0.0119 0.0053 6 6 3.6145 -1.2029 0.0004 7 6 2.2075 -1.2075 -0.0054 8 6 1.8076 -2.6167 -0.0102 9 6 2.9353 -3.3448 -0.0077 10 7 4.0251 -2.5171 -0.0011 11 6 5.4205 -2.9630 0.0026 12 6 5.9395 -3.0022 1.4414 13 6 7.3972 -3.4673 1.4452 14 6 7.9082 -3.5065 2.8625 15 1 7.2584 -3.2273 3.6787 16 6 9.2054 -3.8979 3.1169 17 7 9.6512 -3.9326 4.3537 18 14 10.3295 -4.3802 1.7051 19 1 11.0512 -3.1788 1.2143 20 1 11.3115 -5.3894 2.1767 21 1 9.5193 -4.9559 0.6017 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3632 0.8899 0.5139 25 1 1.6504 2.1160 0.0005 26 1 4.1084 2.1343 0.0091 27 1 5.3717 0.0302 0.0099 28 1 0.7971 -2.9978 -0.0154 29 1 2.9766 -4.4240 -0.0096 30 1 5.4847 -3.9596 -0.4341 31 1 6.0249 -2.2701 -0.5829 32 1 5.8753 -2.0055 1.8781 33 1 5.3351 -3.6951 2.0269 34 1 7.4617 -4.4637 1.0084 35 1 8.0012 -2.7741 0.8599 36 1 10.5638 -4.2083 4.5327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128827145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:52 Heat of formation + Delta-G solvation = 39.548680 kcal Electronic energy + Delta-G solvation = -16520.396669 eV Core-core repulsion = 13969.169149 eV Total energy + Delta-G solvation = -2551.227520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15099 -37.30436 -34.73843 -32.99963 -32.21665 -30.22236 -28.95918 -26.79651 -26.43748 -23.31046 -21.92162 -21.40832 -20.36291 -19.28268 -17.01745 -16.53216 -16.17087 -15.26496 -14.66985 -14.40843 -14.35125 -13.93691 -13.44722 -13.22931 -12.90494 -12.68657 -12.43480 -12.15549 -12.14043 -11.79963 -11.43201 -11.29870 -10.96361 -10.89276 -10.67190 -10.11754 -9.97054 -9.82123 -9.31902 -9.21371 -8.60870 -7.98807 -7.37254 -6.10446 -4.09725 1.28039 1.81967 2.90668 3.08676 3.25029 3.32825 3.34410 4.04172 4.38355 4.79632 4.93979 5.00641 5.07469 5.22452 5.26836 5.39635 5.48963 5.50892 5.62471 5.70795 5.73216 5.77842 5.86717 6.01042 6.10410 6.25182 6.29412 6.40617 6.65083 6.69368 6.78503 6.95196 7.01262 7.14260 7.25694 7.45880 7.53699 7.70494 8.46599 8.94088 9.50778 11.02985 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037633 B = 0.004656 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.845460 B = 6012.047027 C = 6272.370621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.045 4.045 3 C -0.155 4.155 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.103 3.897 7 C -0.110 4.110 8 C -0.216 4.216 9 C 0.058 3.942 10 N -0.475 5.475 11 C 0.103 3.897 12 C -0.117 4.117 13 C -0.010 4.010 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 5.782 -11.628 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.046 4.046 3 C -0.174 4.174 4 C -0.122 4.122 5 C -0.148 4.148 6 C -0.004 4.004 7 C -0.115 4.115 8 C -0.241 4.241 9 C -0.069 4.069 10 N -0.156 5.156 11 C -0.018 4.018 12 C -0.155 4.155 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.159 0.841 29 H 0.182 0.818 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.794 5.586 -11.519 19.564 hybrid contribution 0.889 -0.359 -0.515 1.089 sum -13.905 5.226 -12.035 19.118 Atomic orbital electron populations 1.20705 0.91631 1.02383 1.01846 1.19003 0.95305 0.91279 0.98979 1.20432 0.94090 0.96964 1.05888 1.20722 0.93948 0.96879 1.00616 1.20100 0.99471 0.89681 1.05537 1.18260 0.93401 0.85132 1.03610 1.19030 0.91873 0.93245 1.07350 1.21522 0.97623 0.90795 1.14179 1.21839 0.85512 0.96382 1.03144 1.44291 1.06611 1.03773 1.60971 1.22147 0.78194 1.00855 1.00607 1.21877 0.98946 1.02137 0.92553 1.19520 0.90969 0.95925 0.98384 1.21075 0.97883 1.45557 0.91563 0.91028 1.25034 0.97978 0.94919 0.95502 1.69913 1.17000 1.48171 1.18914 0.86768 0.80719 0.78719 0.82991 1.20224 1.21276 1.19072 0.91556 0.91662 0.91895 0.86539 0.86064 0.86256 0.84088 0.81764 0.89574 0.90074 0.92098 0.92070 0.96428 0.96872 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.95 36.01 0.36 -0.74 16 2 C -0.05 -0.60 5.87 -104.68 -0.61 -1.22 16 3 C -0.15 -1.96 9.62 -39.95 -0.38 -2.34 16 4 C -0.10 -1.35 10.01 -39.54 -0.40 -1.75 16 5 C -0.13 -1.93 10.00 -39.43 -0.39 -2.32 16 6 C 0.10 1.66 6.81 -83.99 -0.57 1.09 16 7 C -0.11 -1.67 6.14 -105.14 -0.65 -2.32 16 8 C -0.22 -2.93 10.78 -37.67 -0.41 -3.33 16 9 C 0.06 0.79 11.27 -16.73 -0.19 0.60 16 10 N -0.48 -7.41 2.78 -114.43 -0.32 -7.72 16 11 C 0.10 1.60 6.00 -4.05 -0.02 1.58 16 12 C -0.12 -2.27 5.48 -26.73 -0.15 -2.42 16 13 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 14 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.88 21.33 27.47 -169.99 -4.67 16.67 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 24 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 30 H 0.09 1.19 8.12 -51.93 -0.42 0.77 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -31.65 304.10 -9.00 -40.64 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.41 Total: -0.39 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -3.96 Total: -26.81 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.46 Total: -34.69 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.65 -9.00 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128827145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.192 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds