Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36656 * 120.11819 * 2 1 4 4 C 1.38793 * 120.53126 * 179.74458 * 3 2 1 5 5 C 1.37792 * 120.66037 * 0.26164 * 4 3 2 6 6 C 1.39085 * 119.78090 * 359.97438 * 5 4 3 7 7 C 1.39599 * 120.11842 * 180.25747 * 2 1 3 8 8 C 1.46491 * 134.03630 * 359.91251 * 7 2 1 9 9 C 1.34234 * 106.99797 * 180.29895 * 8 7 2 10 10 N 1.36840 * 109.94039 * 0.02562 * 9 8 7 11 11 C 1.46491 * 125.06526 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47138 * 264.97513 * 11 10 9 13 13 C 1.53009 * 109.47009 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46985 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99807 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99767 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00248 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47148 * 89.99928 * 18 16 14 20 20 H 1.48501 * 109.47262 * 210.00510 * 18 16 14 21 21 H 1.48507 * 109.47252 * 330.00380 * 18 16 14 22 22 H 1.08997 * 109.47221 * 89.99764 * 1 2 3 23 23 H 1.09006 * 109.46838 * 209.99486 * 1 2 3 24 24 H 1.08997 * 109.46624 * 329.99280 * 1 2 3 25 25 H 1.08002 * 119.73756 * 0.03235 * 3 2 1 26 26 H 1.07994 * 119.66815 * 180.23634 * 4 3 2 27 27 H 1.08001 * 120.10415 * 180.02562 * 5 4 3 28 28 H 1.07994 * 126.50464 * 0.33923 * 8 7 2 29 29 H 1.08003 * 125.03360 * 179.97438 * 9 8 7 30 30 H 1.09000 * 109.47575 * 24.97878 * 11 10 9 31 31 H 1.09007 * 109.47198 * 144.97825 * 11 10 9 32 32 H 1.09004 * 109.47260 * 300.00103 * 12 11 10 33 33 H 1.08999 * 109.47123 * 60.00164 * 12 11 10 34 34 H 1.08996 * 109.46779 * 300.00212 * 13 12 11 35 35 H 1.08999 * 109.47192 * 60.00025 * 13 12 11 36 36 H 0.96995 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5807 1.1921 0.0053 5 6 4.2919 0.0119 0.0053 6 6 3.6145 -1.2029 0.0004 7 6 2.2075 -1.2075 -0.0054 8 6 1.8076 -2.6167 -0.0102 9 6 2.9353 -3.3448 -0.0077 10 7 4.0251 -2.5171 -0.0011 11 6 5.4205 -2.9630 0.0026 12 6 5.9395 -3.0022 1.4414 13 6 7.3972 -3.4673 1.4452 14 6 7.9082 -3.5065 2.8625 15 1 7.2584 -3.2273 3.6787 16 6 9.2054 -3.8979 3.1169 17 7 9.6512 -3.9326 4.3537 18 14 10.3295 -4.3802 1.7051 19 1 11.0512 -3.1788 1.2143 20 1 11.3115 -5.3894 2.1767 21 1 9.5193 -4.9559 0.6017 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3632 0.8899 0.5139 25 1 1.6504 2.1160 0.0005 26 1 4.1084 2.1343 0.0091 27 1 5.3717 0.0302 0.0099 28 1 0.7971 -2.9978 -0.0154 29 1 2.9766 -4.4240 -0.0096 30 1 5.4847 -3.9596 -0.4341 31 1 6.0249 -2.2701 -0.5829 32 1 5.8753 -2.0055 1.8781 33 1 5.3351 -3.6951 2.0269 34 1 7.4617 -4.4637 1.0084 35 1 8.0012 -2.7741 0.8599 36 1 10.5638 -4.2083 4.5327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128827145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = 23.258468 kcal Electronic energy + Delta-G solvation = -16521.103065 eV Core-core repulsion = 13969.169149 eV Total energy + Delta-G solvation = -2551.933916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.21000 -38.35978 -36.35151 -34.54535 -33.65116 -31.69179 -29.97579 -28.41634 -27.35880 -24.92878 -22.94208 -22.54692 -22.06911 -20.38841 -18.96267 -17.79788 -17.26897 -16.33387 -16.25399 -15.86420 -15.81848 -15.08990 -14.79203 -14.35455 -14.30693 -13.93101 -13.67750 -13.44608 -13.29101 -12.99079 -12.93593 -12.61525 -12.29989 -12.16845 -11.85477 -11.76461 -11.64929 -11.58873 -11.41014 -10.80163 -10.32319 -9.06418 -8.43269 -8.32372 -6.38637 0.24515 0.75674 1.35669 1.37758 1.49479 1.85260 1.99340 2.34152 2.99260 3.02825 3.76251 3.82055 3.99911 4.09991 4.14211 4.24732 4.37552 4.43226 4.52980 4.60909 4.74878 4.80720 4.87835 4.90875 4.92292 4.96919 5.09841 5.16099 5.34944 5.37486 5.45273 5.60266 5.62643 5.77095 5.93305 6.00581 6.22419 6.39668 6.47147 6.69596 7.26185 8.84760 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037633 B = 0.004656 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.845460 B = 6012.047027 C = 6272.370621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.103 4.103 5 C -0.156 4.156 6 C 0.073 3.927 7 C -0.135 4.135 8 C -0.218 4.218 9 C 0.046 3.954 10 N -0.486 5.486 11 C 0.114 3.886 12 C -0.104 4.104 13 C -0.006 4.006 14 C -0.539 4.539 15 H 0.023 0.977 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.238 1.238 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.166 0.834 29 H 0.193 0.807 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.033 0.967 35 H 0.025 0.975 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 5.712 -14.107 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.054 4.054 3 C -0.180 4.180 4 C -0.122 4.122 5 C -0.176 4.176 6 C -0.033 4.033 7 C -0.140 4.140 8 C -0.243 4.243 9 C -0.079 4.079 10 N -0.168 5.168 11 C -0.007 4.007 12 C -0.143 4.143 13 C -0.044 4.044 14 C -0.577 4.577 15 H 0.041 0.959 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.161 1.161 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.162 0.838 26 H 0.161 0.839 27 H 0.133 0.867 28 H 0.183 0.817 29 H 0.210 0.790 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.750 5.523 -14.010 21.791 hybrid contribution 1.071 -0.246 0.372 1.160 sum -14.679 5.278 -13.637 20.719 Atomic orbital electron populations 1.20751 0.89265 1.03314 1.02934 1.19476 0.97194 0.90902 0.97861 1.20821 0.94019 0.98066 1.05057 1.21079 0.94627 0.97178 0.99282 1.20287 0.99585 0.90408 1.07333 1.18641 0.94400 0.85648 1.04632 1.19472 0.91813 0.94690 1.07977 1.21885 0.98800 0.90157 1.13424 1.22389 0.85044 0.97646 1.02853 1.44317 1.06732 1.03961 1.61820 1.21936 0.78704 1.02548 0.97496 1.21645 0.97027 1.00189 0.95419 1.19444 0.92954 0.97059 0.94921 1.21453 0.97708 1.45240 0.93266 0.95906 1.26112 0.99911 0.94746 0.98704 1.70086 1.17761 1.49719 1.21822 0.85566 0.78277 0.78736 0.79497 1.19136 1.21044 1.16111 0.90241 0.91451 0.90285 0.83754 0.83870 0.86697 0.81693 0.79041 0.87072 0.89324 0.94409 0.93296 0.94912 0.95665 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.95 71.24 0.71 -1.15 16 2 C -0.05 -1.35 5.87 -19.90 -0.12 -1.47 16 3 C -0.16 -3.78 9.62 22.03 0.21 -3.57 16 4 C -0.10 -2.62 10.01 22.30 0.22 -2.39 16 5 C -0.16 -4.73 10.00 22.37 0.22 -4.51 16 6 C 0.07 2.36 6.81 39.03 0.27 2.62 16 7 C -0.13 -3.97 6.14 -20.20 -0.12 -4.09 16 8 C -0.22 -5.57 10.78 23.51 0.25 -5.32 16 9 C 0.05 1.18 11.27 83.00 0.94 2.12 16 10 N -0.49 -14.76 2.78 -515.94 -1.43 -16.19 16 11 C 0.11 3.41 6.00 86.38 0.52 3.93 16 12 C -0.10 -4.08 5.48 30.60 0.17 -3.91 16 13 C -0.01 -0.27 4.04 29.85 0.12 -0.14 16 14 C -0.54 -31.39 9.66 25.60 0.25 -31.14 16 15 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 16 C 0.00 0.11 5.47 84.65 0.46 0.57 16 17 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 18 Si 0.96 43.32 27.47 68.60 1.88 45.21 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.15 7.91 -2.38 -0.02 1.13 16 24 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 25 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 26 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.11 2.76 8.12 -2.39 -0.02 2.74 16 31 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 35 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -70.73 304.10 5.83 -64.90 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.98 Total: 14.65 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 4.10 Total: -48.46 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.13 Total: -76.31 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -70.73 5.83 -64.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128827145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.161 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds