Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38832 * 119.73500 * 2 1 4 4 C 1.37749 * 120.66653 * 180.02562 * 3 2 1 5 5 C 1.39124 * 119.78068 * 359.97438 * 4 3 2 6 6 C 1.40670 * 119.32963 * 0.02562 * 5 4 3 7 7 C 1.46488 * 106.03933 * 179.97438 * 6 5 4 8 8 C 1.34239 * 106.99335 * 359.75397 * 7 6 5 9 9 N 1.36823 * 109.93377 * 0.39965 * 8 7 6 10 10 C 1.46500 * 125.06584 * 179.84961 * 9 8 7 11 11 C 1.52997 * 109.47473 * 264.69775 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.36626 * 119.73797 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47235 * 269.97766 * 1 2 3 23 23 H 1.09000 * 109.47043 * 29.97847 * 1 2 3 24 24 H 1.08998 * 109.47009 * 149.97426 * 1 2 3 25 25 H 1.08005 * 119.67015 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.10913 * 179.97438 * 4 3 2 27 27 H 1.08002 * 126.50171 * 179.97438 * 7 6 5 28 28 H 1.08005 * 125.03483 * 180.24823 * 8 7 6 29 29 H 1.09002 * 109.47129 * 144.69518 * 10 9 8 30 30 H 1.08998 * 109.46845 * 24.70325 * 10 9 8 31 31 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 33 33 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 34 34 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 35 35 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.11259 * 359.95980 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2279 -0.0005 5 6 4.2834 0.0318 -0.0005 6 6 3.5810 -1.1870 -0.0005 7 6 4.5986 -2.2407 -0.0012 8 6 5.7946 -1.6310 -0.0070 9 7 5.6261 -0.2732 -0.0012 10 6 6.7124 0.7097 -0.0019 11 6 7.0070 1.1454 1.4349 12 6 8.1410 2.1724 1.4340 13 6 8.4316 2.6010 2.8494 14 1 7.8639 2.1830 3.6674 15 6 9.4222 3.5267 3.0996 16 7 10.1139 4.0353 2.1034 17 14 9.7819 4.0585 4.8539 18 1 10.8131 3.1652 5.4403 19 1 10.2805 5.4573 4.8547 20 1 8.5382 3.9758 5.6611 21 6 2.1847 -1.1863 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6459 2.1352 0.0004 26 1 4.0994 2.1709 -0.0009 27 1 4.4204 -3.3059 -0.0010 28 1 6.7486 -2.1374 -0.0127 29 1 6.4167 1.5776 -0.5913 30 1 7.6064 0.2628 -0.4366 31 1 7.3026 0.2774 2.0244 32 1 6.1128 1.5923 1.8696 33 1 9.0353 1.7258 0.9992 34 1 7.8450 3.0401 0.8447 35 1 10.8111 4.6863 2.2795 36 1 1.6423 -2.1202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129577099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = 35.242824 kcal Electronic energy + Delta-G solvation = -16400.575041 eV Core-core repulsion = 13849.160806 eV Total energy + Delta-G solvation = -2551.414235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07638 -37.41018 -34.68010 -32.69685 -31.79457 -30.64083 -28.77677 -27.02811 -25.72549 -23.30398 -22.36809 -20.69554 -20.39866 -19.83426 -16.97634 -16.14794 -16.06337 -14.87397 -14.67464 -14.42087 -14.36034 -13.83653 -13.47161 -13.40868 -12.91508 -12.46763 -12.35765 -12.08148 -12.02191 -11.55775 -11.37329 -11.10389 -10.89536 -10.74651 -10.58662 -10.56293 -9.89439 -9.64408 -9.36107 -9.16578 -8.42842 -7.86516 -7.35632 -6.07652 -4.10541 1.33914 1.81345 2.95514 3.15843 3.28063 3.34504 3.38546 4.07436 4.40650 4.82497 4.97747 5.06296 5.11919 5.26024 5.28746 5.40700 5.59798 5.63329 5.64032 5.72912 5.84258 5.86385 5.94874 5.98594 6.17356 6.26959 6.40359 6.59833 6.61925 6.84590 6.90302 6.99668 7.05499 7.49153 7.54149 7.60217 7.65787 7.90338 8.32593 8.95614 9.54270 11.03572 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004532 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.367589 B = 6176.469204 C = 6636.931588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.096 3.904 6 C -0.109 4.109 7 C -0.222 4.222 8 C 0.060 3.940 9 N -0.474 5.474 10 C 0.104 3.896 11 C -0.124 4.124 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.077 4.077 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.165 0.835 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 -9.444 -6.111 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.011 4.011 6 C -0.114 4.114 7 C -0.247 4.247 8 C -0.067 4.067 9 N -0.155 5.155 10 C -0.016 4.016 11 C -0.162 4.162 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.096 4.096 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.592 -9.090 -6.158 17.473 hybrid contribution 0.507 0.383 0.999 1.184 sum -13.085 -8.707 -5.158 16.542 Atomic orbital electron populations 1.20675 0.91614 1.02108 1.01763 1.19300 0.95621 0.92950 1.04422 1.20626 0.92869 0.97344 1.01648 1.20115 0.93723 0.95409 1.04524 1.18283 0.83408 0.95241 1.04141 1.19193 0.93095 0.92577 1.06530 1.21551 0.90668 0.97823 1.14626 1.21852 0.99559 0.82400 1.02879 1.44368 1.04618 1.05904 1.60629 1.22156 0.87795 0.90897 1.00777 1.22050 1.01198 1.00592 0.92382 1.19050 0.91868 0.92823 0.97576 1.21189 1.18213 1.23917 0.92715 0.92656 1.25013 0.95993 0.96164 0.97170 1.69951 1.22758 1.29879 1.30848 0.86573 0.78618 0.77887 0.84843 1.20590 1.21124 1.19823 1.20020 0.91668 0.97273 1.00630 0.91811 0.92017 0.92109 0.86129 0.86120 0.84072 0.81768 0.90050 0.89551 0.92697 0.92697 0.96368 0.96363 0.92893 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.99 36.00 0.36 -0.63 16 2 C -0.12 -1.57 5.85 -104.99 -0.61 -2.18 16 3 C -0.11 -1.43 9.66 -39.54 -0.38 -1.81 16 4 C -0.12 -1.82 10.00 -39.43 -0.39 -2.22 16 5 C 0.10 1.60 6.81 -83.99 -0.57 1.03 16 6 C -0.11 -1.70 6.37 -105.14 -0.67 -2.37 16 7 C -0.22 -3.11 11.08 -37.67 -0.42 -3.53 16 8 C 0.06 0.85 11.27 -16.73 -0.19 0.67 16 9 N -0.47 -7.70 2.78 -114.43 -0.32 -8.02 16 10 C 0.10 1.74 6.00 -4.04 -0.02 1.71 16 11 C -0.12 -2.52 5.48 -26.73 -0.15 -2.66 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.08 -1.06 9.67 -39.65 -0.38 -1.44 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 24 H 0.06 0.50 8.07 -51.93 -0.42 0.09 16 25 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -30.82 308.11 -9.39 -40.21 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.45 Total: -1.20 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.98 Total: -26.39 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.42 Total: -33.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.82 -9.39 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129577099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.454 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds