Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38832 * 119.73500 * 2 1 4 4 C 1.37749 * 120.66653 * 180.02562 * 3 2 1 5 5 C 1.39124 * 119.78068 * 359.97438 * 4 3 2 6 6 C 1.40670 * 119.32963 * 0.02562 * 5 4 3 7 7 C 1.46488 * 106.03933 * 179.97438 * 6 5 4 8 8 C 1.34239 * 106.99335 * 359.75397 * 7 6 5 9 9 N 1.36823 * 109.93377 * 0.39965 * 8 7 6 10 10 C 1.46500 * 125.06584 * 179.84961 * 9 8 7 11 11 C 1.52997 * 109.47473 * 264.69775 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.36626 * 119.73797 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47235 * 269.97766 * 1 2 3 23 23 H 1.09000 * 109.47043 * 29.97847 * 1 2 3 24 24 H 1.08998 * 109.47009 * 149.97426 * 1 2 3 25 25 H 1.08005 * 119.67015 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.10913 * 179.97438 * 4 3 2 27 27 H 1.08002 * 126.50171 * 179.97438 * 7 6 5 28 28 H 1.08005 * 125.03483 * 180.24823 * 8 7 6 29 29 H 1.09002 * 109.47129 * 144.69518 * 10 9 8 30 30 H 1.08998 * 109.46845 * 24.70325 * 10 9 8 31 31 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 33 33 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 34 34 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 35 35 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.11259 * 359.95980 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5729 1.2279 -0.0005 5 6 4.2834 0.0318 -0.0005 6 6 3.5810 -1.1870 -0.0005 7 6 4.5986 -2.2407 -0.0012 8 6 5.7946 -1.6310 -0.0070 9 7 5.6261 -0.2732 -0.0012 10 6 6.7124 0.7097 -0.0019 11 6 7.0070 1.1454 1.4349 12 6 8.1410 2.1724 1.4340 13 6 8.4316 2.6010 2.8494 14 1 7.8639 2.1830 3.6674 15 6 9.4222 3.5267 3.0996 16 7 10.1139 4.0353 2.1034 17 14 9.7819 4.0585 4.8539 18 1 10.8131 3.1652 5.4403 19 1 10.2805 5.4573 4.8547 20 1 8.5382 3.9758 5.6611 21 6 2.1847 -1.1863 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6459 2.1352 0.0004 26 1 4.0994 2.1709 -0.0009 27 1 4.4204 -3.3059 -0.0010 28 1 6.7486 -2.1374 -0.0127 29 1 6.4167 1.5776 -0.5913 30 1 7.6064 0.2628 -0.4366 31 1 7.3026 0.2774 2.0244 32 1 6.1128 1.5923 1.8696 33 1 9.0353 1.7258 0.9992 34 1 7.8450 3.0401 0.8447 35 1 10.8111 4.6863 2.2795 36 1 1.6423 -2.1202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129577099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = 20.806311 kcal Electronic energy + Delta-G solvation = -16401.201055 eV Core-core repulsion = 13849.160806 eV Total energy + Delta-G solvation = -2552.040250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.19491 -38.49233 -36.39115 -34.50510 -32.87422 -32.09139 -29.98325 -28.45118 -27.02344 -24.97497 -23.46311 -22.36037 -21.56524 -21.01048 -18.68008 -17.75394 -17.20247 -16.56028 -15.93395 -15.86434 -15.73615 -14.98077 -14.63884 -14.45702 -14.30502 -13.90889 -13.68739 -13.50128 -13.18195 -12.85912 -12.79286 -12.69362 -12.52449 -12.35769 -11.89020 -11.74121 -11.64537 -11.50631 -11.27848 -10.60235 -10.49962 -8.96463 -8.48430 -8.24492 -6.36217 0.25085 0.71939 1.37669 1.38383 1.49687 1.85100 1.98289 2.37917 2.98243 3.08393 3.74675 3.80936 3.96945 4.14424 4.15720 4.18574 4.40161 4.46361 4.57902 4.62443 4.78574 4.82303 4.92188 4.95110 4.98487 5.05062 5.07905 5.23156 5.29348 5.43140 5.53696 5.61088 5.77035 5.81627 5.91988 6.00547 6.17518 6.38544 6.45957 6.78796 7.33232 8.86315 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004532 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.367589 B = 6176.469204 C = 6636.931588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.143 4.143 5 C 0.065 3.935 6 C -0.130 4.130 7 C -0.221 4.221 8 C 0.047 3.953 9 N -0.486 5.486 10 C 0.117 3.883 11 C -0.105 4.105 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.085 4.085 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.142 0.858 26 H 0.113 0.887 27 H 0.169 0.831 28 H 0.191 0.809 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.004 0.996 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -10.504 -5.592 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C -0.126 4.126 4 C -0.164 4.164 5 C -0.041 4.041 6 C -0.135 4.135 7 C -0.246 4.246 8 C -0.078 4.078 9 N -0.168 5.168 10 C -0.004 4.004 11 C -0.143 4.143 12 C -0.008 4.008 13 C -0.585 4.585 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.103 4.103 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.131 0.869 27 H 0.186 0.814 28 H 0.208 0.792 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.929 -10.171 -5.643 18.926 hybrid contribution 0.834 0.704 0.811 1.360 sum -14.095 -9.467 -4.832 17.654 Atomic orbital electron populations 1.20728 0.88926 1.03489 1.02742 1.19740 0.97595 0.92321 1.02838 1.20975 0.92288 0.98855 1.00475 1.20283 0.94816 0.95082 1.06176 1.18646 0.83860 0.96190 1.05434 1.19620 0.94254 0.92676 1.06923 1.21937 0.90099 0.98887 1.13636 1.22393 1.01059 0.81631 1.02735 1.44333 1.04230 1.06456 1.61751 1.21857 0.88954 0.91582 0.98042 1.21741 0.98636 0.98930 0.95023 1.18914 0.92857 0.93187 0.95861 1.21612 1.18511 1.24362 0.94018 0.92844 1.25906 0.95711 0.96108 1.01637 1.70063 1.23299 1.30432 1.33108 0.85489 0.78680 0.77688 0.79476 1.19586 1.20441 1.19188 1.20389 0.91174 0.98700 1.00031 0.90884 0.90836 0.90632 0.84043 0.86879 0.81395 0.79164 0.90178 0.87905 0.92914 0.94047 0.97807 0.98374 0.92587 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.99 71.23 0.71 -0.92 16 2 C -0.12 -2.96 5.85 -20.10 -0.12 -3.07 16 3 C -0.11 -2.81 9.66 22.30 0.22 -2.60 16 4 C -0.14 -4.52 10.00 22.37 0.22 -4.30 16 5 C 0.06 2.17 6.81 39.03 0.27 2.43 16 6 C -0.13 -3.93 6.37 -20.20 -0.13 -4.06 16 7 C -0.22 -5.83 11.08 23.51 0.26 -5.57 16 8 C 0.05 1.29 11.27 83.00 0.94 2.22 16 9 N -0.49 -15.72 2.78 -515.94 -1.43 -17.15 16 10 C 0.12 3.94 6.00 86.38 0.52 4.46 16 11 C -0.10 -4.36 5.48 30.59 0.17 -4.19 16 12 C 0.03 1.52 4.97 29.85 0.15 1.67 16 13 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 14 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 17 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C -0.08 -2.16 9.67 22.23 0.22 -1.95 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 24 H 0.07 1.00 8.07 -2.39 -0.02 0.98 16 25 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 26 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 27 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.10 3.10 8.12 -2.39 -0.02 3.08 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -66.40 308.11 6.03 -60.37 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.04 Total: 12.12 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 4.11 Total: -46.15 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.15 Total: -72.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.40 6.03 -60.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129577099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.180 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds