Wall clock time and date at job start Mon Mar 30 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47157 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47631 * 120.00179 * 3 2 1 6 6 H 1.48505 * 109.46980 * 240.00041 * 3 2 1 7 7 C 1.37878 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99804 * 180.95774 * 7 2 1 9 9 C 1.50699 * 120.00368 * 0.94883 * 7 2 1 10 10 H 1.09005 * 109.46641 * 27.44720 * 9 7 2 11 11 N 1.46894 * 109.47350 * 147.44300 * 9 7 2 12 12 C 1.46904 * 111.00199 * 275.00866 * 11 9 7 13 13 C 1.54632 * 111.03428 * 270.32919 * 12 11 9 14 14 C 1.51163 * 104.69619 * 217.36274 * 13 12 11 15 15 C 1.30528 * 111.11862 * 16.38164 * 14 13 12 16 16 C 1.51098 * 111.10397 * 0.03482 * 15 14 13 17 17 C 1.50695 * 109.47524 * 267.44866 * 9 7 2 18 18 C 1.38237 * 119.99775 * 286.43064 * 17 9 7 19 19 C 1.38235 * 120.00016 * 179.80708 * 18 17 9 20 20 C 1.38238 * 119.99813 * 0.40173 * 19 18 17 21 21 C 1.38235 * 120.00176 * 359.84920 * 20 19 18 22 22 C 1.38236 * 120.00018 * 106.70401 * 17 9 7 23 23 H 0.96995 * 120.00572 * 180.12342 * 1 2 3 24 24 H 1.00903 * 111.00664 * 151.04939 * 11 9 7 25 25 H 1.08995 * 110.91244 * 34.29523 * 12 11 9 26 26 H 1.09007 * 110.38934 * 336.14332 * 13 12 11 27 27 H 1.09001 * 110.38776 * 98.52314 * 13 12 11 28 28 H 1.08001 * 124.43100 * 196.43354 * 14 13 12 29 29 H 1.08005 * 124.44431 * 180.02562 * 15 14 13 30 30 H 1.08998 * 110.38563 * 224.75191 * 16 15 14 31 31 H 1.09000 * 110.38934 * 102.37654 * 16 15 14 32 32 H 1.08003 * 120.00067 * 359.97438 * 18 17 9 33 33 H 1.07994 * 120.00348 * 180.22748 * 19 18 17 34 34 H 1.08002 * 120.00019 * 179.83163 * 20 19 18 35 35 H 1.07994 * 120.00119 * 179.97438 * 21 20 19 36 36 H 1.07990 * 120.00077 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0843 -1.1942 0.0162 9 6 1.2511 -2.4991 -0.0205 10 1 0.2864 -2.3539 -0.5070 11 7 2.0278 -3.5010 -0.7626 12 6 1.7719 -3.4024 -2.2058 13 6 0.5816 -4.2979 -2.6209 14 6 0.9716 -4.8521 -3.9722 15 6 2.2505 -4.7062 -4.1890 16 6 2.9272 -4.0314 -3.0187 17 6 1.0343 -2.9769 1.3922 18 6 2.0914 -3.4962 2.1160 19 6 1.8935 -3.9309 3.4132 20 6 0.6367 -3.8539 3.9838 21 6 -0.4215 -3.3394 3.2582 22 6 -0.2227 -2.9012 1.9622 23 1 -0.4851 -0.8400 0.0018 24 1 1.8349 -4.4317 -0.4239 25 1 1.6041 -2.3668 -2.5013 26 1 0.4470 -5.1074 -1.9033 27 1 -0.3296 -3.7052 -2.7014 28 1 0.2822 -5.3081 -4.6673 29 1 2.7582 -5.0261 -5.0870 30 1 3.6099 -3.2575 -3.3695 31 1 3.4614 -4.7647 -2.4144 32 1 3.0725 -3.5599 1.6689 33 1 2.7200 -4.3331 3.9800 34 1 0.4815 -4.1960 4.9964 35 1 -1.4034 -3.2797 3.7038 36 1 -1.0494 -2.4992 1.3954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132893512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:20 Heat of formation + Delta-G solvation = 38.489018 kcal Electronic energy + Delta-G solvation = -17232.630659 eV Core-core repulsion = 14681.357189 eV Total energy + Delta-G solvation = -2551.273470 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.87922 -38.07242 -34.82277 -32.17171 -30.24484 -30.09934 -27.76825 -27.01047 -25.06837 -22.81565 -21.72889 -20.23921 -19.87854 -18.43663 -16.78900 -16.24373 -15.66170 -15.11635 -14.43003 -14.11040 -13.74811 -13.51329 -12.96875 -12.57378 -12.36940 -12.29000 -11.83067 -11.73633 -11.67678 -11.08472 -10.87626 -10.83218 -10.73248 -10.58376 -10.22123 -10.14281 -9.95402 -9.06446 -8.59602 -8.49378 -8.16540 -7.77698 -7.35066 -6.38036 -4.10444 2.16247 2.19831 2.51306 3.43227 3.44550 3.62831 4.47672 4.58184 4.95328 5.08731 5.25717 5.30740 5.57186 5.63021 5.63884 5.66859 5.75789 6.01134 6.07960 6.09800 6.18796 6.29925 6.32033 6.37351 6.42587 6.67224 6.73594 6.79197 6.85133 6.95424 7.17269 7.20049 7.24444 7.55605 7.76986 7.96010 8.01273 8.41911 8.59621 8.84448 9.58689 10.95665 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.009949 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.262991 B = 2813.702857 C = 4117.360092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.564 4.564 8 H 0.059 0.941 9 C 0.230 3.770 10 H 0.020 0.980 11 N -0.668 5.668 12 C 0.098 3.902 13 C -0.132 4.132 14 C -0.169 4.169 15 C -0.167 4.167 16 C -0.091 4.091 17 C -0.043 4.043 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.151 4.151 21 C -0.125 4.125 22 C -0.124 4.124 23 H 0.268 0.732 24 H 0.316 0.684 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -8.577 -1.310 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.896 3.104 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.602 4.602 8 H 0.077 0.923 9 C 0.122 3.878 10 H 0.038 0.962 11 N -0.297 5.297 12 C -0.013 4.013 13 C -0.171 4.171 14 C -0.187 4.187 15 C -0.185 4.185 16 C -0.129 4.129 17 C -0.045 4.045 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.169 4.169 21 C -0.144 4.144 22 C -0.143 4.143 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.994 -6.505 -1.315 6.930 hybrid contribution -0.800 -2.001 0.013 2.155 sum 1.195 -8.506 -1.302 8.687 Atomic orbital electron populations 1.70838 1.06871 1.30552 1.46003 1.25871 0.96490 1.02717 0.93471 0.83548 0.74935 0.75256 0.76665 1.20871 1.21368 1.21342 1.21819 0.94703 0.89769 1.53907 0.92282 1.18452 0.93078 0.90821 0.85416 0.96222 1.60734 1.60829 1.06799 1.01333 1.22291 0.91118 0.98980 0.88897 1.22225 1.00800 0.99098 0.95003 1.23196 0.96724 1.01095 0.97685 1.23342 0.96080 1.00326 0.98763 1.21374 0.98380 0.99074 0.94057 1.20760 0.91893 0.92205 0.99613 1.20954 0.99175 0.98664 0.93617 1.21033 0.96558 1.01513 0.95768 1.20848 0.93587 1.03213 0.99235 1.20961 0.98250 1.00234 0.94907 1.21036 0.97278 1.00490 0.95470 0.92004 0.86695 0.88881 0.91364 0.91715 0.86755 0.86506 0.91328 0.90598 0.86115 0.87351 0.87517 0.87386 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.22 13.63 55.43 0.76 -25.47 16 2 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 3 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.56 -15.13 8.25 -34.44 -0.28 -15.41 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.23 5.43 1.96 -70.02 -0.14 5.29 16 10 H 0.02 0.51 5.93 -51.93 -0.31 0.21 16 11 N -0.67 -13.67 5.70 -100.38 -0.57 -14.24 16 12 C 0.10 1.86 3.20 -65.99 -0.21 1.65 16 13 C -0.13 -2.20 6.51 -26.80 -0.17 -2.38 16 14 C -0.17 -2.44 10.78 -35.67 -0.38 -2.83 16 15 C -0.17 -2.36 10.77 -35.70 -0.38 -2.75 16 16 C -0.09 -1.47 6.55 -26.83 -0.18 -1.65 16 17 C -0.04 -0.97 4.64 -104.63 -0.49 -1.45 16 18 C -0.11 -2.17 9.09 -39.58 -0.36 -2.52 16 19 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 20 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 22 C -0.12 -2.65 9.55 -39.58 -0.38 -3.03 16 23 H 0.27 7.64 5.84 -40.82 -0.24 7.40 16 24 H 0.32 6.00 7.57 -39.29 -0.30 5.70 16 25 H 0.09 2.06 7.74 -51.93 -0.40 1.66 16 26 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.12 2.46 7.92 -52.48 -0.42 2.04 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.11 2.43 7.40 -52.49 -0.39 2.04 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -28.45 299.91 -9.68 -38.13 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.03 Total: 10.31 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -4.27 Total: -33.13 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.18 Total: -39.71 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.45 -9.68 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132893512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.616 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds