Wall clock time and date at job start Mon Mar 30 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47157 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47631 * 120.00179 * 3 2 1 6 6 H 1.48505 * 109.46980 * 240.00041 * 3 2 1 7 7 C 1.37878 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99804 * 180.95774 * 7 2 1 9 9 C 1.50699 * 120.00368 * 0.94883 * 7 2 1 10 10 H 1.09005 * 109.46641 * 27.44720 * 9 7 2 11 11 N 1.46894 * 109.47350 * 147.44300 * 9 7 2 12 12 C 1.46904 * 111.00199 * 275.00866 * 11 9 7 13 13 C 1.54632 * 111.03428 * 270.32919 * 12 11 9 14 14 C 1.51163 * 104.69619 * 217.36274 * 13 12 11 15 15 C 1.30528 * 111.11862 * 16.38164 * 14 13 12 16 16 C 1.51098 * 111.10397 * 0.03482 * 15 14 13 17 17 C 1.50695 * 109.47524 * 267.44866 * 9 7 2 18 18 C 1.38237 * 119.99775 * 286.43064 * 17 9 7 19 19 C 1.38235 * 120.00016 * 179.80708 * 18 17 9 20 20 C 1.38238 * 119.99813 * 0.40173 * 19 18 17 21 21 C 1.38235 * 120.00176 * 359.84920 * 20 19 18 22 22 C 1.38236 * 120.00018 * 106.70401 * 17 9 7 23 23 H 0.96995 * 120.00572 * 180.12342 * 1 2 3 24 24 H 1.00903 * 111.00664 * 151.04939 * 11 9 7 25 25 H 1.08995 * 110.91244 * 34.29523 * 12 11 9 26 26 H 1.09007 * 110.38934 * 336.14332 * 13 12 11 27 27 H 1.09001 * 110.38776 * 98.52314 * 13 12 11 28 28 H 1.08001 * 124.43100 * 196.43354 * 14 13 12 29 29 H 1.08005 * 124.44431 * 180.02562 * 15 14 13 30 30 H 1.08998 * 110.38563 * 224.75191 * 16 15 14 31 31 H 1.09000 * 110.38934 * 102.37654 * 16 15 14 32 32 H 1.08003 * 120.00067 * 359.97438 * 18 17 9 33 33 H 1.07994 * 120.00348 * 180.22748 * 19 18 17 34 34 H 1.08002 * 120.00019 * 179.83163 * 20 19 18 35 35 H 1.07994 * 120.00119 * 179.97438 * 21 20 19 36 36 H 1.07990 * 120.00077 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0843 -1.1942 0.0162 9 6 1.2511 -2.4991 -0.0205 10 1 0.2864 -2.3539 -0.5070 11 7 2.0278 -3.5010 -0.7626 12 6 1.7719 -3.4024 -2.2058 13 6 0.5816 -4.2979 -2.6209 14 6 0.9716 -4.8521 -3.9722 15 6 2.2505 -4.7062 -4.1890 16 6 2.9272 -4.0314 -3.0187 17 6 1.0343 -2.9769 1.3922 18 6 2.0914 -3.4962 2.1160 19 6 1.8935 -3.9309 3.4132 20 6 0.6367 -3.8539 3.9838 21 6 -0.4215 -3.3394 3.2582 22 6 -0.2227 -2.9012 1.9622 23 1 -0.4851 -0.8400 0.0018 24 1 1.8349 -4.4317 -0.4239 25 1 1.6041 -2.3668 -2.5013 26 1 0.4470 -5.1074 -1.9033 27 1 -0.3296 -3.7052 -2.7014 28 1 0.2822 -5.3081 -4.6673 29 1 2.7582 -5.0261 -5.0870 30 1 3.6099 -3.2575 -3.3695 31 1 3.4614 -4.7647 -2.4144 32 1 3.0725 -3.5599 1.6689 33 1 2.7200 -4.3331 3.9800 34 1 0.4815 -4.1960 4.9964 35 1 -1.4034 -3.2797 3.7038 36 1 -1.0494 -2.4992 1.3954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132893512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:20 Heat of formation + Delta-G solvation = 23.141346 kcal Electronic energy + Delta-G solvation = -17233.296184 eV Core-core repulsion = 14681.357189 eV Total energy + Delta-G solvation = -2551.938995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43404 -39.49478 -36.53369 -34.07740 -31.80259 -31.62606 -29.09682 -28.58351 -26.92514 -24.58577 -23.26946 -21.95254 -21.38580 -19.64201 -18.74001 -17.77082 -16.99115 -16.76958 -15.93589 -15.76585 -15.63275 -15.06993 -14.66990 -14.12829 -14.05997 -13.68818 -13.38417 -13.20878 -13.04233 -12.72289 -12.68203 -12.37070 -12.27442 -12.05274 -11.97969 -11.75180 -11.65981 -10.98607 -10.56162 -9.81550 -9.70124 -9.39801 -9.14052 -8.51792 -6.28070 0.61457 0.65935 1.35796 1.50503 1.57970 1.76599 2.54591 2.99476 3.24150 3.44671 3.79356 3.84032 4.13571 4.20753 4.22688 4.32895 4.37750 4.41933 4.63342 4.72360 4.75548 4.80957 4.83757 4.94601 5.01885 5.10513 5.19316 5.25100 5.32496 5.56799 5.68582 5.70260 5.93157 5.97600 6.03349 6.07830 6.28270 6.49924 6.58447 6.89467 7.48745 8.78558 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.009949 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.262991 B = 2813.702857 C = 4117.360092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.029 4.029 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.569 4.569 8 H 0.044 0.956 9 C 0.239 3.761 10 H -0.015 1.015 11 N -0.665 5.665 12 C 0.089 3.911 13 C -0.128 4.128 14 C -0.172 4.172 15 C -0.157 4.157 16 C -0.087 4.087 17 C -0.070 4.070 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.148 4.148 23 H 0.258 0.742 24 H 0.325 0.675 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -10.178 -0.405 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.228 4.228 3 Si 0.931 3.069 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.131 3.869 10 H 0.003 0.997 11 N -0.294 5.294 12 C -0.022 4.022 13 C -0.167 4.167 14 C -0.191 4.191 15 C -0.175 4.175 16 C -0.125 4.125 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.078 -8.136 -0.419 8.709 hybrid contribution -1.135 -1.596 -0.202 1.969 sum 1.943 -9.731 -0.621 9.943 Atomic orbital electron populations 1.70920 1.07671 1.30020 1.48612 1.27087 0.96628 1.05960 0.93091 0.83032 0.74220 0.71944 0.77688 1.21104 1.20008 1.19791 1.22015 0.94047 0.91502 1.53213 0.93723 1.18165 0.91164 0.90779 0.86829 0.99688 1.60647 1.60096 1.06656 1.02040 1.22271 0.94023 0.97443 0.88429 1.22106 0.98984 0.98534 0.97109 1.23280 0.97512 1.01593 0.96670 1.23489 0.95774 0.99346 0.98859 1.21314 0.97274 0.99187 0.94686 1.20630 0.93215 0.94490 0.98751 1.21004 0.98285 0.99418 0.94996 1.21437 0.98158 0.99922 0.94615 1.21339 0.92541 1.01081 1.00732 1.21295 1.00263 0.99183 0.93620 1.21055 0.96547 1.01990 0.97073 0.93094 0.85712 0.93140 0.90972 0.93483 0.83919 0.83040 0.91524 0.89886 0.86609 0.83692 0.83235 0.84694 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.63 21.45 0.29 -56.48 16 2 C -0.03 -1.65 5.46 84.66 0.46 -1.18 16 3 Si 1.11 51.44 29.90 68.60 2.05 53.50 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.57 -31.96 8.25 25.60 0.21 -31.75 16 8 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 9 C 0.24 11.95 1.96 43.42 0.09 12.04 16 10 H -0.01 -0.82 5.93 -2.38 -0.01 -0.83 16 11 N -0.67 -28.40 5.70 -471.50 -2.69 -31.09 16 12 C 0.09 3.54 3.20 46.03 0.15 3.68 16 13 C -0.13 -4.40 6.51 30.55 0.20 -4.20 16 14 C -0.17 -4.72 10.78 26.28 0.28 -4.44 16 15 C -0.16 -4.09 10.77 26.26 0.28 -3.81 16 16 C -0.09 -2.77 6.55 30.53 0.20 -2.57 16 17 C -0.07 -3.20 4.64 -19.87 -0.09 -3.29 16 18 C -0.12 -4.80 9.09 22.27 0.20 -4.59 16 19 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 20 C -0.14 -4.32 10.05 22.27 0.22 -4.09 16 21 C -0.13 -4.47 10.05 22.27 0.22 -4.24 16 22 C -0.15 -6.49 9.55 22.27 0.21 -6.28 16 23 H 0.26 15.77 5.84 -92.71 -0.54 15.23 16 24 H 0.32 12.72 7.57 -89.69 -0.68 12.04 16 25 H 0.05 2.41 7.74 -2.39 -0.02 2.39 16 26 H 0.07 2.38 7.60 -2.38 -0.02 2.36 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 32 H 0.12 4.70 7.92 -2.91 -0.02 4.68 16 33 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.09 4.24 7.40 -2.92 -0.02 4.22 16 Total: -1.00 -64.73 299.91 3.13 -61.60 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.61 Total: 31.04 kcal Atomic # 6 Polarization: -61.43 SS G_CDS: 2.86 Total: -58.57 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.40 Total: -87.57 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.50 kcal Total: -64.73 3.13 -61.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132893512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.742 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds