Wall clock time and date at job start Mon Mar 30 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99721 * 2 1 4 4 H 1.48502 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47222 * 300.00359 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00149 * 3 2 1 7 7 C 1.37873 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 185.17512 * 7 2 1 9 9 C 1.50696 * 120.00117 * 5.17575 * 7 2 1 10 10 H 1.09009 * 109.47045 * 335.17185 * 9 7 2 11 11 N 1.46900 * 109.47580 * 215.17113 * 9 7 2 12 12 C 1.46898 * 111.00086 * 84.99741 * 11 9 7 13 13 C 1.54640 * 111.03850 * 270.34088 * 12 11 9 14 14 C 1.51173 * 104.69105 * 217.36099 * 13 12 11 15 15 C 1.30521 * 111.11725 * 16.38073 * 14 13 12 16 16 C 1.51093 * 111.11025 * 0.03317 * 15 14 13 17 17 C 1.50699 * 109.47186 * 95.16899 * 9 7 2 18 18 C 1.38236 * 120.00023 * 254.16318 * 17 9 7 19 19 C 1.38239 * 120.00016 * 179.97438 * 18 17 9 20 20 C 1.38232 * 119.99749 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.00187 * 0.07182 * 20 19 18 22 22 C 1.38228 * 120.00066 * 359.90906 * 21 20 19 23 23 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.00896 * 111.00014 * 208.95800 * 11 9 7 25 25 H 1.09001 * 110.91543 * 34.29878 * 12 11 9 26 26 H 1.09004 * 110.38190 * 336.14006 * 13 12 11 27 27 H 1.08997 * 110.39084 * 98.52280 * 13 12 11 28 28 H 1.08000 * 124.42746 * 196.39671 * 14 13 12 29 29 H 1.08001 * 124.44323 * 180.02562 * 15 14 13 30 30 H 1.09003 * 110.38869 * 224.75327 * 16 15 14 31 31 H 1.08999 * 110.48673 * 102.42521 * 16 15 14 32 32 H 1.07995 * 120.00441 * 359.97438 * 18 17 9 33 33 H 1.08001 * 120.00178 * 179.72277 * 19 18 17 34 34 H 1.08007 * 119.99913 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.99939 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.00400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0838 9 6 1.2558 -2.4964 -0.1188 10 1 0.2353 -2.3628 0.2405 11 7 1.9285 -3.5232 0.6880 12 6 1.4847 -3.4677 2.0872 13 6 2.3730 -2.5092 2.9139 14 6 2.5023 -3.1755 4.2647 15 6 2.1552 -4.4323 4.2043 16 6 1.7372 -4.8147 2.8035 17 6 1.2273 -2.9302 -1.5618 18 6 0.0610 -2.8160 -2.2950 19 6 0.0351 -3.2135 -3.6187 20 6 1.1756 -3.7246 -4.2093 21 6 2.3417 -3.8397 -3.4758 22 6 2.3677 -3.4419 -2.1523 23 1 -0.4851 0.8400 0.0004 24 1 1.7825 -4.4424 0.2984 25 1 0.4349 -3.1812 2.1514 26 1 3.3527 -2.4028 2.4479 27 1 1.8915 -1.5366 3.0140 28 1 2.8377 -2.6767 5.1620 29 1 2.1655 -5.1099 5.0452 30 1 0.8236 -5.4085 2.8287 31 1 2.5342 -5.3663 2.3049 32 1 -0.8299 -2.4164 -1.8337 33 1 -0.8773 -3.1285 -4.1903 34 1 1.1553 -4.0355 -5.2435 35 1 3.2326 -4.2394 -3.9372 36 1 3.2788 -3.5313 -1.5793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132893734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:23 Heat of formation + Delta-G solvation = 41.791240 kcal Electronic energy + Delta-G solvation = -17225.247083 eV Core-core repulsion = 14674.116808 eV Total energy + Delta-G solvation = -2551.130275 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.65567 -37.89255 -34.55366 -32.08969 -30.20980 -29.99078 -27.66199 -26.89241 -25.50788 -22.60348 -21.63892 -19.96477 -19.54466 -18.22760 -16.52832 -15.95757 -15.44878 -15.02022 -14.43932 -14.35268 -13.97418 -13.21494 -12.62296 -12.52378 -12.21137 -12.01504 -11.82998 -11.64119 -11.36183 -11.10105 -10.99194 -10.78616 -10.60264 -10.31744 -10.21641 -10.03497 -9.58345 -9.49594 -8.55170 -8.37197 -8.06476 -7.72258 -7.31537 -6.05520 -4.07343 2.27009 2.29542 2.69919 3.28010 3.36532 3.41338 4.39076 4.68681 5.16622 5.19654 5.29366 5.34806 5.64568 5.74894 5.77377 5.81477 5.84802 6.14708 6.26152 6.28414 6.42427 6.48319 6.51548 6.58914 6.75834 6.85749 6.90012 6.94566 7.07172 7.28240 7.31064 7.37498 7.38755 7.71932 7.85741 7.89509 8.16924 8.22997 8.70819 9.04577 9.55185 10.99589 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.009918 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.021674 B = 2822.446629 C = 4144.249555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.478 4.478 8 H 0.063 0.937 9 C 0.232 3.768 10 H 0.045 0.955 11 N -0.676 5.676 12 C 0.101 3.899 13 C -0.080 4.080 14 C -0.157 4.157 15 C -0.184 4.184 16 C -0.102 4.102 17 C -0.038 4.038 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.134 4.134 22 C -0.110 4.110 23 H 0.261 0.739 24 H 0.315 0.685 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -7.490 1.012 7.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.125 3.875 10 H 0.063 0.937 11 N -0.306 5.306 12 C -0.010 4.010 13 C -0.118 4.118 14 C -0.176 4.176 15 C -0.202 4.202 16 C -0.140 4.140 17 C -0.040 4.040 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.170 4.170 21 C -0.152 4.152 22 C -0.128 4.128 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.125 -6.965 1.117 7.368 hybrid contribution -0.484 0.767 -0.154 0.920 sum 1.641 -6.198 0.963 6.484 Atomic orbital electron populations 1.69905 1.05927 1.26678 1.50369 1.24990 0.94849 0.99300 0.94819 0.86550 0.80407 0.83702 0.77493 1.19540 1.21084 1.21102 1.20983 0.93636 0.88697 1.48299 0.91878 1.18524 0.95420 0.89447 0.84115 0.93681 1.60879 1.62000 1.06854 1.00879 1.22131 0.96611 0.93022 0.89219 1.21327 1.01233 0.98624 0.90583 1.23539 0.98964 0.96301 0.98756 1.23070 1.02886 0.96927 0.97341 1.21560 1.00451 0.98309 0.93678 1.20755 0.91832 0.91956 0.99420 1.21111 0.98686 0.99575 0.93957 1.20985 0.97654 1.00731 0.95488 1.20828 0.93866 1.03396 0.98943 1.21007 0.97285 1.01879 0.95023 1.21003 0.98610 0.99049 0.94136 0.92936 0.86823 0.93469 0.89636 0.91220 0.86828 0.86911 0.92378 0.90528 0.86469 0.87591 0.87754 0.87567 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 12.77 55.43 0.71 -23.94 16 2 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.48 -12.45 7.72 -34.44 -0.27 -12.72 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.23 5.46 2.36 -70.02 -0.17 5.30 16 10 H 0.05 1.20 6.36 -51.92 -0.33 0.87 16 11 N -0.68 -13.75 5.67 -100.37 -0.57 -14.31 16 12 C 0.10 1.93 3.43 -65.99 -0.23 1.70 16 13 C -0.08 -1.53 5.79 -26.79 -0.16 -1.68 16 14 C -0.16 -2.49 10.78 -35.66 -0.38 -2.87 16 15 C -0.18 -2.72 10.77 -35.70 -0.38 -3.10 16 16 C -0.10 -1.61 6.30 -26.83 -0.17 -1.77 16 17 C -0.04 -0.85 4.65 -104.62 -0.49 -1.33 16 18 C -0.11 -2.46 9.67 -39.58 -0.38 -2.84 16 19 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 20 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 21 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 22 C -0.11 -2.21 9.08 -39.59 -0.36 -2.57 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.31 5.90 7.88 -39.29 -0.31 5.60 16 25 H 0.05 1.00 7.50 -51.93 -0.39 0.62 16 26 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.12 2.62 8.00 -52.49 -0.42 2.20 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.12 2.39 7.90 -52.49 -0.41 1.98 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -27.12 301.91 -9.81 -36.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.21 Total: 9.61 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -4.27 Total: -28.97 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.14 Total: -38.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.12 -9.81 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132893734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.721 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds