Wall clock time and date at job start Mon Mar 30 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99721 * 2 1 4 4 H 1.48502 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47222 * 300.00359 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00149 * 3 2 1 7 7 C 1.37873 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 185.17512 * 7 2 1 9 9 C 1.50696 * 120.00117 * 5.17575 * 7 2 1 10 10 H 1.09009 * 109.47045 * 335.17185 * 9 7 2 11 11 N 1.46900 * 109.47580 * 215.17113 * 9 7 2 12 12 C 1.46898 * 111.00086 * 84.99741 * 11 9 7 13 13 C 1.54640 * 111.03850 * 270.34088 * 12 11 9 14 14 C 1.51173 * 104.69105 * 217.36099 * 13 12 11 15 15 C 1.30521 * 111.11725 * 16.38073 * 14 13 12 16 16 C 1.51093 * 111.11025 * 0.03317 * 15 14 13 17 17 C 1.50699 * 109.47186 * 95.16899 * 9 7 2 18 18 C 1.38236 * 120.00023 * 254.16318 * 17 9 7 19 19 C 1.38239 * 120.00016 * 179.97438 * 18 17 9 20 20 C 1.38232 * 119.99749 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.00187 * 0.07182 * 20 19 18 22 22 C 1.38228 * 120.00066 * 359.90906 * 21 20 19 23 23 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.00896 * 111.00014 * 208.95800 * 11 9 7 25 25 H 1.09001 * 110.91543 * 34.29878 * 12 11 9 26 26 H 1.09004 * 110.38190 * 336.14006 * 13 12 11 27 27 H 1.08997 * 110.39084 * 98.52280 * 13 12 11 28 28 H 1.08000 * 124.42746 * 196.39671 * 14 13 12 29 29 H 1.08001 * 124.44323 * 180.02562 * 15 14 13 30 30 H 1.09003 * 110.38869 * 224.75327 * 16 15 14 31 31 H 1.08999 * 110.48673 * 102.42521 * 16 15 14 32 32 H 1.07995 * 120.00441 * 359.97438 * 18 17 9 33 33 H 1.08001 * 120.00178 * 179.72277 * 19 18 17 34 34 H 1.08007 * 119.99913 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.99939 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.00400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0838 9 6 1.2558 -2.4964 -0.1188 10 1 0.2353 -2.3628 0.2405 11 7 1.9285 -3.5232 0.6880 12 6 1.4847 -3.4677 2.0872 13 6 2.3730 -2.5092 2.9139 14 6 2.5023 -3.1755 4.2647 15 6 2.1552 -4.4323 4.2043 16 6 1.7372 -4.8147 2.8035 17 6 1.2273 -2.9302 -1.5618 18 6 0.0610 -2.8160 -2.2950 19 6 0.0351 -3.2135 -3.6187 20 6 1.1756 -3.7246 -4.2093 21 6 2.3417 -3.8397 -3.4758 22 6 2.3677 -3.4419 -2.1523 23 1 -0.4851 0.8400 0.0004 24 1 1.7825 -4.4424 0.2984 25 1 0.4349 -3.1812 2.1514 26 1 3.3527 -2.4028 2.4479 27 1 1.8915 -1.5366 3.0140 28 1 2.8377 -2.6767 5.1620 29 1 2.1655 -5.1099 5.0452 30 1 0.8236 -5.4085 2.8287 31 1 2.5342 -5.3663 2.3049 32 1 -0.8299 -2.4164 -1.8337 33 1 -0.8773 -3.1285 -4.1903 34 1 1.1553 -4.0355 -5.2435 35 1 3.2326 -4.2394 -3.9372 36 1 3.2788 -3.5313 -1.5793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132893734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:22 Heat of formation + Delta-G solvation = 27.550548 kcal Electronic energy + Delta-G solvation = -17225.864606 eV Core-core repulsion = 14674.116808 eV Total energy + Delta-G solvation = -2551.747798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21998 -39.33668 -36.24451 -34.03014 -31.76295 -31.51281 -29.11956 -28.50077 -27.28723 -24.33073 -23.17446 -21.63699 -21.08977 -19.52624 -18.47292 -17.51140 -16.81434 -16.78538 -16.21451 -15.88310 -15.60740 -14.80936 -14.37305 -14.11444 -13.88117 -13.47387 -13.46099 -12.99284 -12.88789 -12.87149 -12.72819 -12.56701 -12.08958 -11.93433 -11.79577 -11.65614 -11.39336 -11.32038 -10.58627 -9.69444 -9.59196 -9.32521 -9.08804 -8.09220 -6.17855 0.72878 0.76278 1.35612 1.38348 1.46547 1.49052 2.40291 3.06164 3.27449 3.62570 3.83733 3.97425 4.26853 4.31750 4.35415 4.43580 4.49928 4.60491 4.85031 4.88160 4.93430 4.97413 5.03598 5.13791 5.22656 5.23915 5.32946 5.40874 5.49036 5.67382 5.73777 5.79380 5.82777 6.09420 6.14493 6.19466 6.37911 6.48565 6.94668 7.04011 7.47430 8.93872 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.009918 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.021674 B = 2822.446629 C = 4144.249555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.479 4.479 8 H 0.050 0.950 9 C 0.242 3.758 10 H 0.003 0.997 11 N -0.670 5.670 12 C 0.092 3.908 13 C -0.078 4.078 14 C -0.173 4.173 15 C -0.163 4.163 16 C -0.096 4.096 17 C -0.064 4.064 18 C -0.139 4.139 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.119 4.119 23 H 0.259 0.741 24 H 0.325 0.675 25 H 0.016 0.984 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -9.281 0.172 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.134 3.866 10 H 0.021 0.979 11 N -0.300 5.300 12 C -0.019 4.019 13 C -0.116 4.116 14 C -0.191 4.191 15 C -0.181 4.181 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.143 0.857 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.156 0.844 29 H 0.169 0.831 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.423 -8.770 0.280 9.419 hybrid contribution -0.899 1.223 0.037 1.518 sum 2.524 -7.547 0.317 7.965 Atomic orbital electron populations 1.70033 1.07033 1.26971 1.52017 1.25624 0.95514 1.02046 0.95072 0.85720 0.79433 0.80481 0.77384 1.19106 1.20979 1.20789 1.21108 0.92943 0.90140 1.47605 0.93205 1.18201 0.92838 0.89672 0.85869 0.97892 1.60776 1.61199 1.06770 1.01249 1.22177 0.94826 0.95825 0.89028 1.21196 0.99740 0.97522 0.93144 1.23490 1.01149 0.96835 0.97626 1.23345 1.00387 0.96828 0.97515 1.21520 1.01716 0.96052 0.94053 1.20621 0.93270 0.94232 0.98429 1.21072 0.97793 1.01270 0.95674 1.21284 0.99560 0.99713 0.94201 1.21301 0.92678 1.01272 1.00666 1.21403 0.98942 1.00280 0.93784 1.21037 0.97582 0.99585 0.95564 0.93199 0.85744 0.96603 0.91379 0.94614 0.84445 0.83091 0.90682 0.89406 0.89029 0.85004 0.83585 0.83932 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 12.77 21.45 0.27 -53.51 16 2 C 0.02 0.91 5.45 84.65 0.46 1.37 16 3 Si 0.94 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 7 C -0.48 -26.21 7.72 25.60 0.20 -26.02 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 9 C 0.24 12.07 2.36 43.42 0.10 12.17 16 10 H 0.00 0.19 6.36 -2.38 -0.02 0.17 16 11 N -0.67 -28.33 5.67 -471.48 -2.67 -31.01 16 12 C 0.09 3.67 3.43 46.03 0.16 3.82 16 13 C -0.08 -3.11 5.79 30.56 0.18 -2.94 16 14 C -0.17 -5.30 10.78 26.29 0.28 -5.01 16 15 C -0.16 -4.38 10.77 26.26 0.28 -4.09 16 16 C -0.10 -2.87 6.30 30.53 0.19 -2.68 16 17 C -0.06 -2.93 4.65 -19.87 -0.09 -3.02 16 18 C -0.14 -6.13 9.67 22.27 0.22 -5.91 16 19 C -0.13 -4.60 10.05 22.27 0.22 -4.38 16 20 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 21 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 22 C -0.12 -4.73 9.08 22.27 0.20 -4.52 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.32 12.44 7.88 -89.70 -0.71 11.73 16 25 H 0.02 0.73 7.50 -2.39 -0.02 0.71 16 26 H 0.07 2.89 8.08 -2.39 -0.02 2.87 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.48 8.05 -2.39 -0.02 2.47 16 32 H 0.09 4.40 8.00 -2.91 -0.02 4.37 16 33 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.12 4.63 7.90 -2.91 -0.02 4.61 16 Total: -1.00 -62.10 301.91 2.82 -59.28 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.35 Total: 27.66 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 2.85 Total: -49.24 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.40 Total: -84.51 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.10 2.82 -59.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132893734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.827 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds