Wall clock time and date at job start Mon Mar 30 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.48126 * 110.99641 * 170.00190 * 11 10 9 13 13 C 1.53696 * 102.35588 * 95.82294 * 12 11 10 14 14 C 1.52042 * 121.84972 * 241.29233 * 13 12 11 15 15 C 1.51993 * 121.93288 * 168.48022 * 13 12 11 16 16 C 1.50710 * 103.92529 * 24.75291 * 13 12 11 17 17 C 1.37944 * 132.17700 * 164.30411 * 16 13 12 18 18 C 1.38269 * 120.18944 * 180.31306 * 17 16 13 19 19 C 1.38299 * 119.88883 * 0.03864 * 18 17 16 20 20 C 1.37897 * 120.22717 * 359.84660 * 19 18 17 21 21 C 1.39216 * 107.48734 * 344.34714 * 16 13 12 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.09000 * 110.82631 * 214.04068 * 12 11 10 28 28 H 1.08995 * 110.82657 * 337.60469 * 12 11 10 29 29 H 1.08999 * 117.52462 * 356.05150 * 14 13 12 30 30 H 1.08999 * 117.52857 * 141.23747 * 14 13 12 31 31 H 1.09000 * 117.52142 * 218.63294 * 15 13 12 32 32 H 1.08999 * 117.52468 * 3.74349 * 15 13 12 33 33 H 1.08003 * 119.90597 * 0.33994 * 17 16 13 34 34 H 1.08004 * 120.05078 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.88770 * 179.82889 * 19 18 17 36 36 H 1.08002 * 119.85552 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4249 -6.0749 -0.2389 13 6 2.7352 -6.5537 1.1882 14 6 4.1494 -6.5480 1.7467 15 6 3.4381 -7.8740 1.4582 16 6 1.5481 -6.0899 1.9926 17 6 1.0867 -6.4348 3.2460 18 6 -0.0576 -5.8463 3.7519 19 6 -0.7417 -4.9097 2.9987 20 6 -0.2847 -4.5584 1.7459 21 6 0.8698 -5.1434 1.2295 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 1.9260 -6.8576 -0.8105 28 1 3.3330 -5.7444 -0.7430 29 1 4.9551 -6.2522 1.0748 30 1 4.2776 -6.2619 2.7906 31 1 3.0988 -8.4598 2.3126 32 1 3.7754 -8.4505 0.5968 33 1 1.6211 -7.1664 3.8339 34 1 -0.4166 -6.1178 4.7337 35 1 -1.6370 -4.4520 3.3928 36 1 -0.8239 -3.8266 1.1627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172640441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:05 Heat of formation + Delta-G solvation = 62.542265 kcal Electronic energy + Delta-G solvation = -17234.399632 eV Core-core repulsion = 14684.169189 eV Total energy + Delta-G solvation = -2550.230443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70645 -36.93415 -35.83986 -33.10240 -30.67300 -29.97036 -28.83312 -26.23564 -23.98022 -22.65995 -22.39872 -21.55805 -20.05184 -19.28995 -16.42665 -16.00601 -15.86635 -15.25585 -14.66190 -14.38247 -14.14838 -13.83868 -13.43562 -13.14692 -12.50153 -12.14511 -12.11019 -11.82151 -11.51024 -11.35519 -11.17530 -10.91271 -10.84624 -10.62641 -10.29555 -10.22906 -10.01871 -9.44559 -9.12407 -8.80359 -8.40406 -8.26352 -7.38169 -5.99790 -4.01864 1.64833 1.79410 3.32077 3.38199 3.41363 3.73157 4.17989 4.25190 4.47305 4.50269 4.74111 4.97308 5.08269 5.36457 5.37507 5.41481 5.57802 5.59235 5.67885 5.83053 5.90737 5.94592 5.97535 6.08306 6.12473 6.22949 6.37306 6.41458 6.74752 6.86883 6.89804 6.93795 7.16304 7.41753 7.70984 7.74395 7.89601 8.05646 8.41700 9.04239 9.61344 11.11712 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.006675 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.714659 B = 4193.444326 C = 4806.587508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.066 3.934 11 N -0.494 5.494 12 C 0.084 3.916 13 C -0.115 4.115 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.114 4.114 17 C -0.094 4.094 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.101 4.101 21 C 0.118 3.882 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -14.290 4.699 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.058 4.058 11 N -0.210 5.210 12 C -0.043 4.043 13 C -0.117 4.117 14 C -0.196 4.196 15 C -0.195 4.195 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.162 4.162 19 C -0.123 4.123 20 C -0.121 4.121 21 C 0.022 3.978 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.051 -14.082 4.214 15.012 hybrid contribution 1.007 0.950 0.619 1.517 sum 4.059 -13.132 4.833 14.570 Atomic orbital electron populations 1.69965 1.05985 1.26581 1.50613 1.24968 0.94837 0.99110 0.95269 0.86601 0.79831 0.83509 0.78104 1.20627 1.21187 1.19949 1.21145 0.92937 0.90957 1.50970 0.92843 1.19230 0.94108 0.89954 0.98243 1.22497 0.96610 0.87163 0.99503 1.60383 1.27857 1.03920 1.28842 1.22600 0.95831 0.92986 0.92882 1.20746 0.92158 1.02017 0.96744 1.22896 0.93894 1.00619 1.02148 1.22754 1.03426 0.90064 1.03301 1.19991 0.95555 1.01486 0.94654 1.20183 0.96773 1.00174 0.94176 1.20885 0.96549 0.98918 0.99892 1.20924 0.99873 0.97379 0.94101 1.20777 0.95065 1.00162 0.96111 1.19543 0.94157 0.95125 0.89014 0.92987 0.95763 0.95533 0.91532 0.95332 0.89558 0.90089 0.88329 0.88694 0.88759 0.88399 0.87151 0.86354 0.85873 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.58 4.82 -27.88 -0.13 0.44 16 10 C 0.07 1.45 4.70 -3.82 -0.02 1.43 16 11 N -0.49 -9.66 5.06 -169.30 -0.86 -10.51 16 12 C 0.08 1.31 6.82 -2.79 -0.02 1.29 16 13 C -0.12 -1.69 2.37 -156.29 -0.37 -2.06 16 14 C -0.16 -1.98 10.31 -27.11 -0.28 -2.26 16 15 C -0.16 -1.78 10.32 -27.14 -0.28 -2.06 16 16 C -0.11 -1.93 6.04 -104.36 -0.63 -2.56 16 17 C -0.09 -1.41 10.02 -39.68 -0.40 -1.81 16 18 C -0.14 -2.09 10.06 -39.55 -0.40 -2.48 16 19 C -0.10 -1.68 10.02 -39.68 -0.40 -2.08 16 20 C -0.10 -1.94 8.53 -39.29 -0.34 -2.28 16 21 C 0.12 2.29 5.32 -83.28 -0.44 1.84 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.73 5.49 -51.93 -0.29 0.45 16 25 H 0.07 1.39 7.85 -51.93 -0.41 0.99 16 26 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.13 2.77 7.08 -52.49 -0.37 2.40 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -30.84 298.24 -9.98 -40.83 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.22 Total: 0.69 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -4.11 Total: -26.16 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.12 Total: -36.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.84 -9.98 -40.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172640441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.368 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds