Wall clock time and date at job start Mon Mar 30 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.48126 * 110.99641 * 170.00190 * 11 10 9 13 13 C 1.53696 * 102.35588 * 95.82294 * 12 11 10 14 14 C 1.52042 * 121.84972 * 241.29233 * 13 12 11 15 15 C 1.51993 * 121.93288 * 168.48022 * 13 12 11 16 16 C 1.50710 * 103.92529 * 24.75291 * 13 12 11 17 17 C 1.37944 * 132.17700 * 164.30411 * 16 13 12 18 18 C 1.38269 * 120.18944 * 180.31306 * 17 16 13 19 19 C 1.38299 * 119.88883 * 0.03864 * 18 17 16 20 20 C 1.37897 * 120.22717 * 359.84660 * 19 18 17 21 21 C 1.39216 * 107.48734 * 344.34714 * 16 13 12 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.09000 * 110.82631 * 214.04068 * 12 11 10 28 28 H 1.08995 * 110.82657 * 337.60469 * 12 11 10 29 29 H 1.08999 * 117.52462 * 356.05150 * 14 13 12 30 30 H 1.08999 * 117.52857 * 141.23747 * 14 13 12 31 31 H 1.09000 * 117.52142 * 218.63294 * 15 13 12 32 32 H 1.08999 * 117.52468 * 3.74349 * 15 13 12 33 33 H 1.08003 * 119.90597 * 0.33994 * 17 16 13 34 34 H 1.08004 * 120.05078 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.88770 * 179.82889 * 19 18 17 36 36 H 1.08002 * 119.85552 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4249 -6.0749 -0.2389 13 6 2.7352 -6.5537 1.1882 14 6 4.1494 -6.5480 1.7467 15 6 3.4381 -7.8740 1.4582 16 6 1.5481 -6.0899 1.9926 17 6 1.0867 -6.4348 3.2460 18 6 -0.0576 -5.8463 3.7519 19 6 -0.7417 -4.9097 2.9987 20 6 -0.2847 -4.5584 1.7459 21 6 0.8698 -5.1434 1.2295 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 1.9260 -6.8576 -0.8105 28 1 3.3330 -5.7444 -0.7430 29 1 4.9551 -6.2522 1.0748 30 1 4.2776 -6.2619 2.7906 31 1 3.0988 -8.4598 2.3126 32 1 3.7754 -8.4505 0.5968 33 1 1.6211 -7.1664 3.8339 34 1 -0.4166 -6.1178 4.7337 35 1 -1.6370 -4.4520 3.3928 36 1 -0.8239 -3.8266 1.1627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172640441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:05 Heat of formation + Delta-G solvation = 45.182161 kcal Electronic energy + Delta-G solvation = -17235.152423 eV Core-core repulsion = 14684.169189 eV Total energy + Delta-G solvation = -2550.983233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.97264 -38.09780 -37.21848 -35.17127 -32.35236 -31.40833 -30.21947 -27.84234 -25.73347 -23.84928 -23.41549 -23.20548 -21.59642 -20.49815 -18.54565 -17.35169 -17.04924 -16.68603 -16.37114 -15.98076 -15.47837 -15.11507 -14.89302 -14.51188 -14.05390 -13.85396 -13.52588 -13.31866 -12.99141 -12.86929 -12.51350 -12.39899 -12.35535 -12.19687 -11.91150 -11.64827 -11.35275 -11.25183 -11.12442 -10.57217 -10.23128 -9.58396 -8.75698 -8.21805 -6.33514 0.38729 0.48560 1.37863 1.39903 1.50712 2.37619 2.59936 2.91237 3.09342 3.11597 3.41557 3.67442 3.88224 4.01552 4.22094 4.24547 4.29725 4.47854 4.50537 4.61242 4.70694 4.73823 4.74992 4.82483 4.87809 4.99875 5.01984 5.14494 5.23190 5.41035 5.50211 5.60242 5.61722 5.62655 5.78020 5.90939 6.08359 6.21941 6.41392 6.82202 7.35074 8.90450 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.006675 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.714659 B = 4193.444326 C = 4806.587508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.513 5.513 12 C 0.083 3.917 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.096 4.096 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.132 4.132 21 C 0.079 3.921 22 H 0.264 0.736 23 H -0.012 1.012 24 H 0.005 0.995 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -15.817 6.152 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.038 4.038 11 N -0.230 5.230 12 C -0.043 4.043 13 C -0.144 4.144 14 C -0.194 4.194 15 C -0.164 4.164 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.149 4.149 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.018 4.018 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.023 0.977 25 H 0.091 0.909 26 H 0.038 0.962 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.006 -15.636 5.669 17.369 hybrid contribution 0.336 1.360 0.205 1.415 sum 5.342 -14.277 5.874 16.336 Atomic orbital electron populations 1.70114 1.07823 1.27785 1.51262 1.25956 0.95764 1.03282 0.94510 0.85426 0.78606 0.78270 0.78616 1.19545 1.20592 1.18789 1.21572 0.93429 0.92184 1.51210 0.92272 1.19028 0.94309 0.91809 0.95435 1.22062 0.95143 0.87361 0.99187 1.60268 1.28741 1.04009 1.29948 1.22694 0.95575 0.91747 0.94292 1.20743 0.92632 1.05615 0.95384 1.23001 0.92553 1.01655 1.02214 1.22906 1.00281 0.88912 1.04305 1.20345 0.95906 1.00267 0.95118 1.20638 0.96800 1.00324 0.93639 1.21340 0.95663 0.97022 1.00883 1.21173 1.00807 0.98117 0.93086 1.20764 0.96049 1.00790 0.97621 1.19739 0.94980 0.97119 0.89920 0.92729 0.99327 0.97708 0.90899 0.96216 0.88524 0.89067 0.87434 0.88686 0.87282 0.86319 0.83658 0.82425 0.84219 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.78 4.82 29.85 0.14 1.92 16 10 C 0.09 3.99 4.70 86.31 0.41 4.40 16 11 N -0.51 -20.83 5.06 -689.55 -3.49 -24.32 16 12 C 0.08 2.53 6.82 86.30 0.59 3.12 16 13 C -0.14 -3.87 2.37 -53.34 -0.13 -4.00 16 14 C -0.16 -3.46 10.31 30.35 0.31 -3.14 16 15 C -0.13 -2.33 10.32 30.33 0.31 -2.02 16 16 C -0.11 -3.71 6.04 -19.70 -0.12 -3.83 16 17 C -0.10 -2.60 10.02 22.21 0.22 -2.37 16 18 C -0.13 -3.48 10.06 22.29 0.22 -3.26 16 19 C -0.11 -3.69 10.02 22.20 0.22 -3.47 16 20 C -0.13 -5.43 8.53 22.46 0.19 -5.24 16 21 C 0.08 3.15 5.32 38.32 0.20 3.35 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 24 H 0.00 0.28 5.49 -2.39 -0.01 0.27 16 25 H 0.07 3.15 7.85 -2.39 -0.02 3.13 16 26 H 0.02 0.91 8.06 -2.39 -0.02 0.89 16 27 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.09 2.50 7.58 -2.39 -0.02 2.49 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.10 4.51 7.08 -2.91 -0.02 4.49 16 Total: -1.00 -70.10 298.24 3.15 -66.94 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.05 Total: 13.84 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.28 Total: -45.90 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.20 Total: -82.08 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.10 3.15 -66.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172640441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.127 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds