Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30920 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48502 * 109.47199 * 275.42041 * 3 2 1 5 5 H 1.48498 * 109.47242 * 35.41792 * 3 2 1 6 6 H 1.48494 * 109.47438 * 155.41811 * 3 2 1 7 7 C 1.39821 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00626 * 341.69699 * 7 2 1 9 9 C 1.41175 * 119.99846 * 161.69506 * 7 2 1 10 10 C 1.40997 * 120.08171 * 150.10960 * 9 7 2 11 11 C 1.36306 * 120.26361 * 180.02562 * 10 9 7 12 12 C 1.39402 * 120.43357 * 0.25060 * 11 10 9 13 13 N 1.38559 * 119.92365 * 179.72628 * 12 11 10 14 14 C 1.40834 * 120.15525 * 359.45225 * 12 11 10 15 15 C 1.47697 * 120.13220 * 180.27576 * 14 12 11 16 16 C 1.31185 * 118.08191 * 285.29129 * 15 14 12 17 17 C 1.50082 * 123.84381 * 180.45400 * 16 15 14 18 18 C 1.53015 * 110.13656 * 342.81515 * 17 16 15 19 19 C 1.53364 * 108.49436 * 49.69753 * 18 17 16 20 20 C 1.50086 * 118.08065 * 105.03167 * 15 14 12 21 21 C 1.38733 * 119.73280 * 0.56565 * 14 12 11 22 22 H 0.96998 * 120.00242 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.87201 * 359.96858 * 10 9 7 24 24 H 1.08000 * 119.78354 * 179.97438 * 11 10 9 25 25 H 0.97000 * 120.00179 * 0.02562 * 13 12 11 26 26 H 0.97001 * 120.00232 * 180.02562 * 13 12 11 27 27 H 1.08005 * 118.07481 * 0.43489 * 16 15 14 28 28 H 1.08998 * 109.36313 * 103.01983 * 17 16 15 29 29 H 1.09001 * 109.36391 * 222.61378 * 17 16 15 30 30 H 1.09000 * 109.63124 * 169.39666 * 18 17 16 31 31 H 1.08995 * 109.63192 * 289.99102 * 18 17 16 32 32 H 1.08998 * 109.63710 * 51.77085 * 19 18 17 33 33 H 1.08997 * 109.63546 * 172.36784 * 19 18 17 34 34 H 1.08999 * 109.36173 * 283.04046 * 20 15 14 35 35 H 1.09006 * 109.35955 * 42.63248 * 20 15 14 36 36 H 1.08004 * 120.21105 * 179.68817 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3762 2.1125 -1.3938 5 1 1.5026 2.6169 0.8114 6 1 3.5933 1.4099 0.5824 7 6 2.0083 -1.2109 -0.0005 8 1 1.5094 -2.1227 0.2927 9 6 3.3665 -1.2416 -0.3846 10 6 4.2350 -2.2062 0.1661 11 6 5.5471 -2.2389 -0.2016 12 6 6.0459 -1.3173 -1.1209 13 7 7.3828 -1.3566 -1.4829 14 6 5.1930 -0.3501 -1.6869 15 6 5.7207 0.6222 -2.6654 16 6 6.4643 1.6063 -2.2187 17 6 7.0578 2.6701 -3.0954 18 6 7.0408 2.2181 -4.5571 19 6 5.6315 1.7163 -4.8948 20 6 5.3798 0.4231 -4.1135 21 6 3.8565 -0.3104 -1.3171 22 1 -0.4850 0.8400 0.0004 23 1 3.8594 -2.9215 0.8829 24 1 6.2056 -2.9808 0.2254 25 1 7.9704 -2.0250 -1.0971 26 1 7.7312 -0.7156 -2.1222 27 1 6.6606 1.6540 -1.1577 28 1 6.4777 3.5873 -2.9940 29 1 8.0862 2.8597 -2.7878 30 1 7.2950 3.0584 -5.2032 31 1 7.7605 1.4121 -4.6996 32 1 4.8966 2.4693 -4.6100 33 1 5.5601 1.5168 -5.9640 34 1 5.9967 -0.3767 -4.5233 35 1 4.3288 0.1481 -4.2027 36 1 3.1966 0.4313 -1.7425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203023209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = 10.453091 kcal Electronic energy + Delta-G solvation = -17351.051592 eV Core-core repulsion = 14798.562393 eV Total energy + Delta-G solvation = -2552.489199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.96904 -37.24782 -34.33790 -32.52691 -31.93982 -30.46698 -29.05552 -27.92764 -24.12550 -23.15181 -22.29254 -21.22096 -20.00057 -17.75241 -16.89065 -16.23517 -15.82245 -15.36175 -14.67516 -14.25668 -13.62627 -13.28194 -13.27401 -13.01885 -12.57191 -12.35899 -12.31051 -12.02665 -11.97512 -11.78985 -11.06359 -10.73448 -10.68897 -10.51709 -10.26239 -10.10855 -9.88183 -9.51441 -9.29640 -8.80002 -8.37211 -7.57394 -6.73309 -6.60237 -4.14538 2.43337 2.76593 2.84899 3.23369 3.30567 3.44026 4.13496 4.61019 4.85504 4.96358 4.99329 5.03915 5.44506 5.55946 5.60872 5.70361 5.75244 5.78070 5.96399 6.02619 6.05288 6.14859 6.30029 6.35346 6.44766 6.56409 6.60901 6.93620 7.05636 7.19736 7.27168 7.38281 7.49789 7.61526 7.95281 8.09734 8.45368 8.55818 8.65634 8.85085 9.01763 10.31351 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.009359 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.381078 B = 2991.100519 C = 3811.331378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.084 3.916 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.456 4.456 8 H 0.086 0.914 9 C 0.056 3.944 10 C -0.160 4.160 11 C -0.156 4.156 12 C 0.116 3.884 13 N -0.891 5.891 14 C -0.099 4.099 15 C -0.048 4.048 16 C -0.176 4.176 17 C -0.083 4.083 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.081 4.081 21 C -0.181 4.181 22 H 0.280 0.720 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.382 0.618 26 H 0.385 0.615 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 3.862 -6.626 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.487 4.487 8 H 0.104 0.896 9 C 0.052 3.948 10 C -0.179 4.179 11 C -0.178 4.178 12 C 0.016 3.984 13 N -0.433 5.433 14 C -0.104 4.104 15 C -0.048 4.048 16 C -0.194 4.194 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.118 4.118 21 C -0.201 4.201 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.208 0.792 26 H 0.212 0.788 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.970 3.949 -6.570 14.214 hybrid contribution 0.487 0.722 0.063 0.873 sum 12.457 4.671 -6.507 14.810 Atomic orbital electron populations 1.69747 1.07848 1.29541 1.38130 1.25999 0.94608 1.01159 0.91411 0.86434 0.81274 0.80586 0.78639 1.19905 1.22248 1.16984 1.19229 0.93252 0.95877 1.40303 0.89603 1.17555 0.93374 0.92149 0.91671 1.20672 0.92439 1.02580 1.02257 1.19905 0.96246 1.00183 1.01441 1.17254 0.84218 0.97669 0.99303 1.41815 1.07783 1.40270 1.53458 1.18152 0.93749 0.97803 1.00681 1.19683 0.96081 0.94988 0.94073 1.22269 1.01219 0.96580 0.99372 1.20372 1.00107 0.97470 0.94050 1.21585 0.97380 1.00455 0.96144 1.21646 0.97053 0.97773 0.99295 1.20449 1.02214 0.97175 0.91997 1.20927 0.93589 1.03391 1.02187 0.91007 0.88162 0.88780 0.79167 0.78808 0.88046 0.91506 0.91695 0.92246 0.91961 0.91827 0.92010 0.91112 0.90687 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.15 13.93 55.54 0.77 -22.37 16 2 C 0.08 2.31 5.40 -17.35 -0.09 2.21 16 3 Si 0.90 21.97 24.51 -169.99 -4.17 17.80 16 4 H -0.27 -6.49 6.70 56.52 0.38 -6.12 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.25 -6.15 6.87 56.52 0.39 -5.76 16 7 C -0.46 -12.79 9.55 -37.88 -0.36 -13.15 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.06 1.45 5.10 -106.85 -0.55 0.91 16 10 C -0.16 -3.75 9.72 -39.23 -0.38 -4.13 16 11 C -0.16 -3.27 9.80 -39.84 -0.39 -3.66 16 12 C 0.12 2.35 6.77 -83.41 -0.56 1.79 16 13 N -0.89 -14.28 8.95 32.67 0.29 -13.99 16 14 C -0.10 -2.15 5.04 -104.87 -0.53 -2.68 16 15 C -0.05 -0.87 4.19 -102.82 -0.43 -1.30 16 16 C -0.18 -2.91 8.86 -36.37 -0.32 -3.23 16 17 C -0.08 -1.07 6.11 -28.17 -0.17 -1.24 16 18 C -0.12 -1.37 6.00 -26.54 -0.16 -1.53 16 19 C -0.12 -1.57 6.01 -26.45 -0.16 -1.73 16 20 C -0.08 -1.29 5.80 -28.09 -0.16 -1.45 16 21 C -0.18 -4.46 6.89 -38.51 -0.27 -4.73 16 22 H 0.28 7.16 8.30 -40.82 -0.34 6.83 16 23 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 24 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 25 H 0.38 5.22 8.83 -40.82 -0.36 4.86 16 26 H 0.38 5.73 7.21 -40.82 -0.29 5.44 16 27 H 0.10 1.81 7.94 -52.48 -0.42 1.39 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.45 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 2.57 4.73 -52.48 -0.25 2.32 16 LS Contribution 289.57 15.07 4.36 4.36 Total: -1.00 -28.74 289.57 -8.41 -37.15 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.14 Total: 10.98 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -4.54 Total: -33.93 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 1.07 Total: -36.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.17 Total: 17.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.74 -8.41 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203023209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.606 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds